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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">AMT</journal-id>
<journal-title-group>
<journal-title>Atmospheric Measurement Techniques</journal-title>
<abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1867-8548</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-10-759-2017</article-id><title-group><article-title>Structural uncertainty in air mass factor calculation for NO<inline-formula><mml:math id="M1" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <?xmltex \hack{\break}?> and HCHO satellite retrievals</article-title>
      </title-group><?xmltex \runningtitle{Structural uncertainty in AMF calculation process for NO${}_{2}$ and HCHO satellite retrievals}?><?xmltex \runningauthor{A.~Lorente et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Lorente</surname><given-names>Alba</given-names></name>
          <email>alba.lorentedelgado@wur.nl</email>
        <ext-link>https://orcid.org/0000-0002-2287-4687</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Folkert Boersma</surname><given-names>K.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4591-7635</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Yu</surname><given-names>Huan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0447-4284</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Dörner</surname><given-names>Steffen</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5049-5692</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5 aff6">
          <name><surname>Hilboll</surname><given-names>Andreas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1038-6248</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Richter</surname><given-names>Andreas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3339-212X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Liu</surname><given-names>Mengyao</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7609-067X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Lamsal</surname><given-names>Lok N.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Barkley</surname><given-names>Michael</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>De Smedt</surname><given-names>Isabelle</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3541-7725</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Van Roozendael</surname><given-names>Michel</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Wang</surname><given-names>Yang</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9828-9871</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Wagner</surname><given-names>Thomas</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Beirle</surname><given-names>Steffen</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-7196-0901</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Lin</surname><given-names>Jin-Tai</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2362-2940</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Krotkov</surname><given-names>Nickolay</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6170-6750</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Stammes</surname><given-names>Piet</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Wang</surname><given-names>Ping</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Eskes</surname><given-names>Henk J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff10 aff11">
          <name><surname>Krol</surname><given-names>Maarten</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3506-2477</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Wageningen University, Meteorology and Air Quality Group, Wageningen, the Netherlands</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Royal Netherlands Meteorological Institute, De Bilt, the Netherlands</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Belgian Institute for Space Aeronomy (BIRA-IASB), Brussels, Belgium</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Max-Planck Institute for Chemistry (MPI-C), Mainz, Germany</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Institute of Environmental Physics (IUP-UB), University of Bremen, Bremen, Germany</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>MARUM-Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Laboratory for Climate and Ocean-Atmosphere Studies, Department of Atmospheric and Oceanic Sciences, <?xmltex \hack{\break}?> School of Physics, Peking University, Beijing 100871, China</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>EOS Group, Department of Physics and Astronomy, University of Leicester, Leicester, UK</institution>
        </aff>
        <aff id="aff10"><label>10</label><institution>Netherlands Institute for Space Research (SRON), Utrecht, the Netherlands</institution>
        </aff>
        <aff id="aff11"><label>11</label><institution>Institute for Marine and Atmospheric Research Utrecht, Utrecht University, Utrecht, the Netherlands</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Alba Lorente (alba.lorentedelgado@wur.nl)</corresp></author-notes><pub-date><day>7</day><month>March</month><year>2017</year></pub-date>
      
      <volume>10</volume>
      <issue>3</issue>
      <fpage>759</fpage><lpage>782</lpage>
      <history>
        <date date-type="received"><day>5</day><month>October</month><year>2016</year></date>
           <date date-type="rev-request"><day>2</day><month>November</month><year>2016</year></date>
           <date date-type="rev-recd"><day>27</day><month>January</month><year>2017</year></date>
           <date date-type="accepted"><day>1</day><month>February</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://amt.copernicus.org/articles/.html">This article is available from https://amt.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://amt.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>Air mass factor (AMF) calculation is the largest source of uncertainty in
NO<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO satellite retrievals in situations with enhanced trace gas
concentrations in the lower troposphere. Structural uncertainty arises when
different retrieval methodologies are applied within the scientific community to
the same satellite observations. Here, we address the issue of AMF structural
uncertainty via a detailed comparison of AMF calculation methods that are
structurally different between seven retrieval groups for measurements from
the Ozone Monitoring Instrument (OMI). We estimate the escalation of
structural uncertainty in every sub-step of the AMF calculation process. This
goes beyond the algorithm uncertainty estimates provided in state-of-the-art
retrievals, which address the theoretical propagation of uncertainties for
one particular retrieval algorithm only. We find that top-of-atmosphere
reflectances simulated by four radiative transfer models (RTMs) (DAK,
McArtim, SCIATRAN and VLIDORT) agree within 1.5 %. We find that different
retrieval groups agree well in the calculations of altitude resolved AMFs
from different RTMs (to within 3 %), and in the tropospheric AMFs (to
within 6 %) as long as identical ancillary data (surface albedo, terrain
height, cloud parameters and trace gas profile) and cloud and aerosol
correction procedures are being used. Structural uncertainty increases
sharply when retrieval groups use their preference for ancillary data, cloud
and aerosol correction. On average, we estimate the AMF structural
uncertainty to be 42 % over polluted regions and 31 % over unpolluted
regions, mostly driven by substantial differences in the a priori trace gas
profiles, surface albedo and cloud parameters. Sensitivity studies for one
particular algorithm indicate that different cloud correction approaches
result in substantial AMF differences in polluted conditions (5 to 40 %
depending on cloud fraction and cloud pressure, and 11 % on average) even
for low cloud fractions (<inline-formula><mml:math id="M3" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.2) and the choice of aerosol correction
introduces an average uncertainty of 50 % for situations with high
pollution and high aerosol loading. Our work shows that structural
uncertainty in AMF calculations is significant and that it is mainly caused by
the assumptions and choices made to represent the state of the atmosphere. In
order to decide which approach and which ancillary data are best for AMF
calculations, we call for well-designed validation exercises focusing on
polluted conditions in which AMF structural uncertainty has the highest impact on
NO<inline-formula><mml:math id="M4" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO retrievals.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Satellite observations in the UV and visible spectral range are widely used
to monitor trace gases such as nitrogen dioxide (NO<inline-formula><mml:math id="M5" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) and formaldehyde
(HCHO). These gases are relevant for air quality and climate change, because
they are involved in the formation of tropospheric ozone and aerosols, which
have an important influence on atmospheric radiative forcing
<xref ref-type="bibr" rid="bib1.bibx29" id="paren.1"/>. Ozone and aerosols are defined as “essential climate
variables” (ECVs) by the Global Climate Observing System (GCOS). These ECVs
and their precursors (NO<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO among others) are included in the ECV
framework because they contribute to characterisation of the Earth's climate and
they can be monitored from existing observation systems <xref ref-type="bibr" rid="bib1.bibx13" id="paren.2"/>.
Currently a wide range of ECV products are available, but they rarely have
reliable and fully traceable quality information. To address this need, the
Quality Assurance for Essential Climate Variables project (QA4ECV,
<uri>www.qa4ecv.eu</uri>) aims to harmonise, improve and assure the quality of
retrieval methods for the ECV precursors NO<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO. Here, we focus on
retrievals of tropospheric NO<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO vertical column densities (VCDs)
from space-borne UV/Vis spectrometers. Retrievals from these instruments have
been used for a wide range of applications. These notably include estimating
anthropogenic emissions of NO<inline-formula><mml:math id="M9" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and HCHO (e.g.
<xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx42" id="altparen.3"/>), natural isoprene emissions (e.g.
<xref ref-type="bibr" rid="bib1.bibx41 bib1.bibx5" id="altparen.4"/>) and NO<inline-formula><mml:math id="M10" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> production from lightning (e.g.
<xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx6" id="altparen.5"/>), data assimilation (e.g.
<xref ref-type="bibr" rid="bib1.bibx45" id="altparen.6"/>) and trend detection (e.g. <xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx50 bib1.bibx21" id="altparen.7"/>).</p>
      <p>Although trace gas satellite retrievals have improved over the last decades
(e.g. <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx51 bib1.bibx22 bib1.bibx14" id="altparen.8"/>), there is still a
need for a more complete understanding of the uncertainties involved in each
retrieval step. The retrieval of NO<inline-formula><mml:math id="M11" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO columns consists of three
successive steps. First a spectral fitting is performed to obtain the trace
gas concentration integrated along the average atmospheric light path (slant
column density, SCD) from backscattered radiance spectra. For NO<inline-formula><mml:math id="M12" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, the
stratospheric contribution to the SCD is removed to obtain the tropospheric
SCD. Finally, the SCD is converted into the VCD
using an air mass factor (AMF). Previous studies indicated that the AMF
calculation is the largest source of uncertainty (contributing up to half of
the typical VCD uncertainties of 40–60 %) in the NO<inline-formula><mml:math id="M13" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO
retrievals in scenarios with a substantial tropospheric contribution to the
total column (e.g. <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx20 bib1.bibx4" id="altparen.9"/>). These studies
arrived at such theoretical uncertainty estimates based on error propagation
for one specific retrieval algorithm.</p>
      <p>Theoretical uncertainty (also known as parametric uncertainty) is the
uncertainty arising within one particular retrieval method. Structural
uncertainty is the uncertainty that arises when different retrieval
methodologies are applied to the same data <xref ref-type="bibr" rid="bib1.bibx58" id="paren.10"/>. To represent the
state of the atmosphere, several choices and assumptions are made in the
retrieval algorithm, in particular within the AMF calculation. Even though
these choices are physically robust and valid, when different retrieval
algorithms based on different choices are applied to the same satellite
observations, this usually leads to different results. The structural
uncertainty is intrinsic to the retrieval algorithm formulation and it is
considered to be a source of systematic uncertainty <xref ref-type="bibr" rid="bib1.bibx48" id="paren.11"/>. In
principle, theoretical and structural uncertainties should be considered
independently of each other. However, in the calculation of the theoretical
uncertainty, the contribution of the ancillary data is often calculated by
comparing different databases (e.g. to estimate surface albedo uncertainty as
in <xref ref-type="bibr" rid="bib1.bibx9" id="altparen.12"/>) rather than using the uncertainty of the database
itself. Consequently, some components are shared in the structural and
theoretical uncertainty calculations. However, for a full structural
uncertainty estimate, all sources of methodological differences need to be
considered. In the framework of AMF calculations addressed here, this implies
e.g. the selection of radiative transfer model, vertical discretisation and
interpolation schemes, the method for cloud and aerosol correction and the
selection of (external or ancillary) data on the atmospheric state (surface
reflectivity, cloud cover, terrain height and a priori trace gas profile).
The problem of structural uncertainty has been addressed in other fields of
atmospheric sciences, e.g. in satellite retrievals for atmospheric variables
<xref ref-type="bibr" rid="bib1.bibx25" id="paren.13"/> and in numerical models for climate studies
<xref ref-type="bibr" rid="bib1.bibx57" id="paren.14"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Flow chart of AMF calculation and comparison process followed in the
study. In the third step forward model parameters (<inline-formula><mml:math id="M14" display="inline"><mml:mi mathvariant="bold-italic">b</mml:mi></mml:math></inline-formula>: surface albedo,
surface pressure, a priori profile, temperature, cloud fraction and cloud
pressure) are selected for the harmonised settings comparison (upper part) and
preferred settings comparison (lower part). In each step the main differences
between the compared elements are highlighted. The compared parameters and
their structural uncertainty (<inline-formula><mml:math id="M15" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula>) in each step are TOA reflectance
(<inline-formula><mml:math id="M16" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), box-AMFs (<inline-formula><mml:math id="M18" display="inline"><mml:mi mathvariant="bold-italic">m</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), and tropospheric AMFs
(<inline-formula><mml:math id="M20" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>).</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f01.png"/>

      </fig>

      <p>There are few studies addressing structural uncertainty for trace gas
retrievals. <xref ref-type="bibr" rid="bib1.bibx62" id="text.15"/> compared NO<inline-formula><mml:math id="M22" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> tropospheric columns retrieved
from GOME data by three different groups. In that study, the discrepancies
inherent to differences and assumptions in the retrieval methods were
identified as a major source of systematic uncertainty. However, the causes
of discrepancies between retrievals were not addressed but were targeted for
a more detailed investigation. In this study we focus on AMF structural
uncertainty by comparing the AMF calculation approaches used by seven different
retrieval groups and providing a traceable analysis of all components of the
AMF calculation. Ensemble techniques to estimate structural uncertainty have
already been applied in different atmospheric disciplines (e.g.
<xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx40" id="altparen.16"/>). The groups that participated in this study are
Belgian Institute for Space Aeronomy (IASB-BIRA; abbreviated as BIRA),
Institute of Environmental Physics, University of Bremen (IUP-UB), Wageningen
University (WUR) and Royal Netherlands Meteorological Institute (KNMI)
(calculations made by WUR following the KNMI approach, abbreviated as WUR),
University of Leicester (UoL), Max Planck Institute for Chemistry (MPI-C),
NASA Goddard Space Flight Center (NASA-GSFC; abbreviated as NASA) and Peking
University.</p>
      <p>We start with a comparison of top-of-atmosphere (TOA) reflectances simulated
by radiative transfer models (RTMs), the main tool for any AMF calculation
(Sect. 3.1). The RTMs DAK, McArtim, SCIATRAN and VLIDORT solve the radiative
transfer equation differently, and have different degrees of sophistication
to account for the Earth's sphericity and multiple scattering. Next we compare
altitude-dependent (or box-) AMFs for NO<inline-formula><mml:math id="M23" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO computed with the four
RTMs (Sect. 3.2). This is followed by a comparison of tropospheric AMFs (for
NO<inline-formula><mml:math id="M24" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) calculated by four groups for measurements by the Ozone Monitoring
Instrument (OMI) based on identical settings (same ancillary data and same
approach for cloud and temperature correction) (Sect. 3.3.1). We interpret
the resulting spread between the tropospheric AMFs as the AMF structural
uncertainty associated with using different RTMs, vertical discretisation and
interpolation schemes. Then, we investigate how the choice of cloud
correction affects the AMF structural uncertainty (Sect. 3.3.2). For the
overall structural uncertainty estimate, we perform a round-robin exercise
(Sect. 3.3.3) in which seven different groups calculate NO<inline-formula><mml:math id="M25" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs using
their own preferred methods for cloud and aerosol correction and sources of
ancillary data. Here we assess the effect of the different choices in the AMF
structural uncertainty. Finally, we investigate how stratospheric AMFs are
affected by the selection of RTM and their physical description of photon
transport through a spherical atmosphere. The complete chain of uncertainties
associated with each phase provides traceable quality assurance for the AMF
calculation. Recommendations on best practices are given for this particular
algorithm step and they will be applied in a community best practice
retrieval algorithm for ECV precursors, under development in the framework of
the QA4ECV project.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>AMF calculation process</title>
      <p>The concept of a traceability chain (here in the form of a flow diagram) for
the AMF calculation process and uncertainty assessment used in this study is
illustrated in Fig. 1. Structural uncertainty estimated in each step is based
on the standard deviation (<inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mi mathvariant="italic">σ</mml:mi></mml:mrow></mml:math></inline-formula>) of relative differences of the compared
elements. Modelled reflectance (<inline-formula><mml:math id="M27" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>) at TOA is the starting point for air
mass factor calculations using radiative transfer models. A RTM solves the
radiative transfer equation, which describes the transport of radiation
through the atmosphere to the observer (in our case the satellite) and the
physical processes that affect the intensity of the radiation (absorption,
scattering, refraction and reflection) (first box in the diagram in Fig. 1).
Reflectance (unitless) is calculated from fundamental radiation quantities,
and it is defined as the ratio of modelled Earth radiance (<inline-formula><mml:math id="M28" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula>) (times <inline-formula><mml:math id="M29" display="inline"><mml:mi mathvariant="italic">π</mml:mi></mml:math></inline-formula>) and the solar irradiance at TOA perpendicular to the solar beam (<inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)
multiplied by the cosine of the solar zenith angle (<inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>):
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M32" display="block"><mml:mrow><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">π</mml:mi><mml:mi>I</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>Different models use different methods to solve the radiative transfer
equation and to describe the sphericity of the Earth's atmosphere.
Differences in modelled TOA reflectances between RTMs provide an estimate for
the reflectance structural uncertainty (<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). This uncertainty due to
the choice of the RTM propagates to the next step in the AMF calculation.</p>
      <p>Altitude-dependent AMFs (box-AMFs, equivalent to scattering weights)
characterise the vertical sensitivity of the measurement to a trace gas
(e.g. <xref ref-type="bibr" rid="bib1.bibx47" id="altparen.17"/>). They are directly related to how the measured
radiance at TOA changes with a change of the optical depth of the atmosphere
(related to the presence of a trace gas in a certain atmospheric layer), with
the requirement that the absorber is optically thin (optical thickness
<inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>gas</mml:mtext></mml:msub><mml:mo>≪</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>). In the context of the AMF calculation (second box
in diagram of Fig. <xref ref-type="fig" rid="Ch1.F1"/>), box-AMFs for each layer can be calculated
and stored in a look-up table (LUT) as a function of the forward model
parameters (<inline-formula><mml:math id="M35" display="inline"><mml:mi mathvariant="bold-italic">b</mml:mi></mml:math></inline-formula>) such as satellite viewing geometry, pressure level,
surface pressure and surface reflectivity. There is also the possibility of
online radiative transfer calculations for determining box-AMFs, i.e.
bypassing the calculation of a LUT (e.g. Lin et al., 2014, 2015;
<xref ref-type="bibr" rid="bib1.bibx27" id="altparen.18"/>). Different RTMs use different vertical discretisations
of the atmosphere, and calculate box-AMFs in different ways (see Sect. 2.2).
A comparison of the box-AMF LUTs calculated with different RTMs provides a
measure for the box-AMF structural uncertainty (<inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), which can be
considered to be the reproducibility of the box-AMFs from different RTMs when
the same settings and input data are used.</p>
      <p>The air mass factor (<inline-formula><mml:math id="M37" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula>) represents the relative (dimensionless) length of
the mean light path at a certain wavelength for photons interacting with a
certain absorber in the atmosphere relative to the vertical path. The AMFs
are used to convert the SCD obtained from the reflectance spectra to a VCD.
To calculate the tropospheric VCD, a tropospheric AMF is used
(VCD<inline-formula><mml:math id="M38" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">tr</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M39" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> SCD<inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">tr</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">tr</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). For species
that have a stratospheric contribution to the total slant column, the
stratospheric SCD first needs to be estimated and subtracted from the total
SCD. For this purpose, a stratospheric AMF is often used together with an
independent estimate of the stratospheric VCD (e.g. from a chemistry
transport model, a climatology or independent measurements)
(SCD<inline-formula><mml:math id="M41" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">strat</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M42" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> VCD<inline-formula><mml:math id="M43" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">strat</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M44" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">strat</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>).</p>
      <p>If the trace gas is optically thin, the total air mass factor can be written
as the sum of the box-AMFs of each layer weighted by the partial vertical
column (e.g. <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx9" id="altparen.19"/>):
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M46" display="block"><mml:mrow><mml:mi>M</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>l</mml:mi></mml:munder><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>)</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>l</mml:mi></mml:munder><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>In Eq. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the box-AMF and <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the trace gas
sub-column in layer <inline-formula><mml:math id="M49" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>. However, as the actual profile of sub-columns is
unknown, an a priori profile has to be used in the AMF calculation. The
summation is done over the atmospheric layers (<inline-formula><mml:math id="M50" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>) of the a priori trace gas
profile. In this step of the AMF calculation, apart from the profile shape of
the trace gas, it is also necessary to have the best estimates for other
forward model parameters (<inline-formula><mml:math id="M51" display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo stretchy="true" mathvariant="normal">^</mml:mo></mml:mover></mml:math></inline-formula>) such as satellite viewing
geometry, surface pressure and surface reflectivity. Surface reflectivity
depends on the surface properties and the geometry of the incident and
reflected light. This anisotropy is described by the bidirectional
reflectance distribution function (BRDF). In practice, surface reflectivity
is often approximated by an isotropic Lambertian equivalent reflector (LER).
There are different sources from which the a priori information can be
obtained. It is desirable to use as many forward model parameters as possible
retrieved from the satellite instrument itself. This practice gives
consistency to the trace gas retrieval regarding the forward model
parameters.</p>
      <p>The NO<inline-formula><mml:math id="M52" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO absorption cross sections used in the SCD fit and box-AMF
calculation are representative of one fixed temperature. However, these
cross sections vary with temperature, so it is necessary to apply a
temperature correction. This correction accounts for the change in the
absorption cross section spectrum at a specific layer as a function of the
effective temperature (see Eq. S1 in the Supplement), based on temperature
and trace gas profiles from model data or climatologies. The correction is
commonly done by applying a correction factor (<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) for each layer in the
AMF calculation.
            <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M54" display="block"><mml:mrow><mml:mi>M</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>l</mml:mi></mml:munder><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo mathvariant="normal" stretchy="true">^</mml:mo></mml:mover><mml:mo>)</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>l</mml:mi></mml:munder><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>
          Most of the studies in which the temperature effect on the NO<inline-formula><mml:math id="M55" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cross
section is analysed assume a simple dependency of the correction factor to
temperature <xref ref-type="bibr" rid="bib1.bibx61" id="paren.20"/> (see Eqs. S2 and S3 for typically used
correction factors). For satellite applications, the change of the absorption
cross section in case of NO<inline-formula><mml:math id="M56" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> has been reported to be approximately
<inline-formula><mml:math id="M57" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.3 % per K in the visible (<xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx8" id="altparen.21"/>) and
<inline-formula><mml:math id="M58" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.05 % per K for HCHO <xref ref-type="bibr" rid="bib1.bibx19" id="paren.22"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Overview of radiative transfer models that participated in the
top-of-atmosphere reflectance comparison and their main characteristics.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="50pt"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="70pt"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="95pt"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="80pt"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="70pt"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Model</oasis:entry>  
         <oasis:entry colname="col2">DAK</oasis:entry>  
         <oasis:entry colname="col3">McArtim</oasis:entry>  
         <oasis:entry colname="col4">SCIATRAN</oasis:entry>  
         <oasis:entry colname="col5">VLIDORT</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Reference</oasis:entry>  
         <oasis:entry colname="col2">
                      <xref ref-type="bibr" rid="bib1.bibx54" id="text.23"/>
                    </oasis:entry>  
         <oasis:entry colname="col3">
                      <xref ref-type="bibr" rid="bib1.bibx23" id="text.24"/>
                    </oasis:entry>  
         <oasis:entry colname="col4">
                      <xref ref-type="bibr" rid="bib1.bibx52" id="text.25"/>
                    </oasis:entry>  
         <oasis:entry colname="col5">
                      <xref ref-type="bibr" rid="bib1.bibx53" id="text.26"/>
                    </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Institute</oasis:entry>  
         <oasis:entry colname="col2">KNMI, WUR</oasis:entry>  
         <oasis:entry colname="col3">MPI-C</oasis:entry>  
         <oasis:entry colname="col4">IUP-UB</oasis:entry>  
         <oasis:entry colname="col5">IASB-BIRA</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Solving the<?xmltex \hack{\hfill\break}?>Radiative<?xmltex \hack{\hfill\break}?>Transfer<?xmltex \hack{\hfill\break}?>equation</oasis:entry>  
         <oasis:entry colname="col2">Doubling adding <?xmltex \hack{\hfill\break}?>method</oasis:entry>  
         <oasis:entry colname="col3">Monte Carlo methods<?xmltex \hack{\hfill\break}?>to solve integral<?xmltex \hack{\hfill\break}?>form of RTE</oasis:entry>  
         <oasis:entry colname="col4">Source function <?xmltex \hack{\hfill\break}?>integration technique<?xmltex \hack{\hfill\break}?>and discrete –<?xmltex \hack{\hfill\break}?>ordinate method</oasis:entry>  
         <oasis:entry colname="col5">Linearised discrete<?xmltex \hack{\hfill\break}?>ordinate solution</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Sphericity<?xmltex \hack{\hfill\break}?>correction</oasis:entry>  
         <oasis:entry colname="col2">Pseudo-spherical<?xmltex \hack{\hfill\break}?>for direct solar <?xmltex \hack{\hfill\break}?>incident photons</oasis:entry>  
         <oasis:entry colname="col3">Full 3-D spherical model<?xmltex \hack{\hfill\break}?>calculations on a sphere</oasis:entry>  
         <oasis:entry colname="col4">Full spherical mode<?xmltex \hack{\hfill\break}?>for solar and single <?xmltex \hack{\hfill\break}?>scattered photons</oasis:entry>  
         <oasis:entry colname="col5">Pseudo-spherical <?xmltex \hack{\hfill\break}?>for solar and single<?xmltex \hack{\hfill\break}?>scattered photons</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>Satellite retrievals also need to consider the presence of clouds. In the AMF
calculation, residual clouds can be accounted for in several ways. The
independent pixel approximation (IPA) consists of calculating the AMF for a
partly cloudy scene as a linear combination of cloudy (<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">cl</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and
clear (<inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">cr</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) components of the AMF, weighted by the cloud radiance
fraction <inline-formula><mml:math id="M61" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (i.e. the fraction of radiance that originates from the cloudy
part of the pixel) (<xref ref-type="bibr" rid="bib1.bibx43 bib1.bibx9" id="altparen.27"/>):
            <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M62" display="block"><mml:mrow><mml:mi>M</mml:mi><mml:mo>=</mml:mo><mml:mi>w</mml:mi><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">cl</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>w</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">cr</mml:mi></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          In Eq. (<xref ref-type="disp-formula" rid="Ch1.E4"/>) <inline-formula><mml:math id="M63" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is wavelength dependent through radiation
intensity, so it will be different for NO<inline-formula><mml:math id="M64" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO (see Eq. S4 in the
Supplement).</p>
      <p>AMFs for cloudy scenes are calculated using Eq. (<xref ref-type="disp-formula" rid="Ch1.E3"/>) with
a specific cloud albedo and cloud pressure, with <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> below the cloud.
In line with assumptions made in current cloud retrievals, the cloud is
considered to be a Lambertian reflector with a fixed cloud albedo. This simple
cloud model is, in most cases, suitable to be used in trace gas retrieval
algorithms <xref ref-type="bibr" rid="bib1.bibx1" id="paren.28"/>. As an alternative, the radiative effects of
the cloudy parts of the pixels can be calculated by representing the clouds
as volume scatterers (see Sect. S1.3), or the cloud structures and their
radiative properties can be simulated using 3-D RTMs (e.g.
<xref ref-type="bibr" rid="bib1.bibx46" id="altparen.29"/>).</p>
      <p>The atmosphere can also be assumed to be cloud-free for cloud fractions below
a certain threshold (e.g. 0.1 or 0.2, see Table 3). In that case, a clear-sky
AMF is used and Eq. (<xref ref-type="disp-formula" rid="Ch1.E4"/>) reduces to <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mi>M</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">cr</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
For cloud fractions larger than the clear-sky threshold but below a
cloudy-sky threshold, IPA is sometimes applied. Generally, measurements with
cloud fractions higher than the cloudy-sky threshold are discarded or
flagged. There is also the possibility to account for cloud-aerosol mixtures;
in this case the threshold for using either clear-sky AMF or IPA can depend
on both cloud fraction and cloud altitude (see Sect. S1.3). In all approaches
accurate information is needed on the cloud radiance fraction and
cloud height.</p>
      <p>Different retrieval groups use different sources for the ancillary data, as
well as different methods to account for the temperature dependence and the
presence of clouds and aerosols (e.g. <xref ref-type="bibr" rid="bib1.bibx62" id="altparen.30"/>). In our study, each of
the groups first calculated tropospheric AMFs using harmonised settings, i.e.
using the same forward model parameters, temperature correction and cloud
correction. In order to calculate the total AMF using
Eq. (<xref ref-type="disp-formula" rid="Ch1.E3"/>), an interpolation from the LUT needs to be done
to obtain the box-AMFs at the specific values of the forward model
parameters. Furthermore, a vertical interpolation is required to adjust the
vertical discretisation of the a priori absorber profile to the one of the
LUT. From the comparison of the tropospheric AMFs calculated using harmonised
settings, we can thus obtain a relative AMF structural uncertainty, which is
determined by different approaches in interpolation and vertical
discretisation of the box-AMFs, assuming that the selected forward model
parameters are the true values.</p>
      <p>Next, each of the groups used their preferred settings to calculate
tropospheric AMFs. In this round-robin exercise, a comparison of
state-of-the-art retrieval algorithms, the differences between AMFs not only
arise from differences between the RTMs, vertical discretisation and
interpolation but also from differences in the selection of forward model
parameter values and the different corrections for clouds, aerosols and
surface reflectivity. Thus the differences in the AMFs using the preferred
settings can be interpreted as the overall structural uncertainty of the AMF
calculation <xref ref-type="bibr" rid="bib1.bibx58" id="paren.31"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Participating models</title>
      <p>Four RTMs from different research groups participated in the comparison. Some
differences between models are highlighted in Table <xref ref-type="table" rid="Ch1.T1"/>. A brief
summary for each model is listed alphabetically in this section and more
detailed information about the models can be found in the references.</p>
<sec id="Ch1.S2.SS2.SSS1">
  <title>DAK</title>
      <p>DAK (Doubling-Adding KNMI) was developed at the Royal Netherlands
Meteorological Institute <xref ref-type="bibr" rid="bib1.bibx54" id="paren.32"/>. DAK uses the doubling-adding
method for solving the radiative transfer equation
(<xref ref-type="bibr" rid="bib1.bibx55 bib1.bibx18" id="altparen.33"/>). The method consists of first calculating the
reflection and transmission properties of a homogeneous layer by repeated
doubling, starting with a very thin layer, and then adding homogeneous layers
on top of each other, which then yields the reflection and transmission of
the combined layers. The internal radiation field is computed at the
interface of all layers and the radiation emerging at the top of the
atmosphere and at the surface is calculated. DAK accounts for multiple
scattering and polarisation. It is also possible to account for the Earth's sphericity using the pseudo-spherical option, which corrects for sphericity
in the light path of the direct solar beam, but not in the scattered beam.</p>
      <p>Box-AMFs are calculated with DAK in this study by WUR/KNMI by differencing
the logarithm of reflectances at TOA with and without the trace gas in
atmospheric layer <inline-formula><mml:math id="M67" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula> divided by the gas absorption optical thickness of the
layer <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">gas</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>:
              <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M69" display="block"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">ln</mml:mi><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="normal">ln</mml:mi><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="Ch1.S2.SS2.SSS2">
  <title>McArtim</title>
      <p>McArtim (Monte Carlo Atmospheric Radiative Transfer Inversion Model)
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.34"/> was developed at University of Heidelberg and
Max-Planck Institute for Chemistry (MPI-C, Mainz). It is based on the
backward Monte Carlo method: a photon emerges from a detector in an arbitrary
line-of-sight direction and is followed in the backward direction along the
path until the photon leaves the top of the atmosphere. The various events
which may happen to the photon at various altitudes are defined by suitable
probability distributions. At each scattering event the probability that the
photon is scattered into the direction of the sun is calculated and the
intensity of the photon is weighted by the sum of the probabilities of all
scattering events (local estimation method). In this RTM, the
integro-differential equation for radiative transfer is deduced and solved
using Neumann series, the summands of which are linked with the contributions
of multiple scattering orders to the radiation field. McArtim is a 3-D-model
and uses full spherical geometry, which means that sphericity is accounted
for incoming, single scattered and multiple scattered photons. The model is
capable of including polarisation and rotational Raman scattering (which are
included in the simulations shown in this study).</p>
      <p>Box-AMFs calculated by MPI-C are obtained from Jacobians (derived by <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="normal">ln</mml:mi><mml:mi>I</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">β</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M71" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> (km<inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) the
absorption coefficient) for each grid box according to the formula:
              <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M73" display="block"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>W</mml:mi><mml:mrow><mml:mi>I</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            In Eq. (<xref ref-type="disp-formula" rid="Ch1.E6"/>) <inline-formula><mml:math id="M74" display="inline"><mml:mi>W</mml:mi></mml:math></inline-formula> refers to the Jacobian (km), <inline-formula><mml:math id="M75" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> is the simulated
radiance at TOA normalised by the solar spectrum (unitless) and <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:math></inline-formula> is
the grid box thickness (km).</p>
</sec>
<sec id="Ch1.S2.SS2.SSS3">
  <title>SCIATRAN</title>
      <p>SCIATRAN <xref ref-type="bibr" rid="bib1.bibx52" id="paren.35"/> was developed at the Institute of Environmental
Physics at the University of Bremen (IUP-UB) in Germany. It models radiative
transfer processes in the atmosphere from the UV to the thermal infrared, in
both scalar and vector mode, i.e. with the option to account for
polarisation. The simulations can be done for a plane parallel,
pseudo-spherical or fully spherical atmosphere. In the fully spherical
approach, the integral radiative transfer equation is solved by accounting for
single scattering in spherical mode, and multiple scattering is approximated
with a solution of the differential–integral radiative transfer equation in
the plane parallel mode.</p>
      <p>SCIATRAN calculates the Jacobians or weighting functions, which are the
derivatives of the simulated radiance with respect to atmospheric and surface
parameters (air number density in this case). These quantities are related to
the box-AMFs calculated by IUP-UB as follows:
              <disp-formula id="Ch1.E7" content-type="numbered"><mml:math id="M77" display="block"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi>I</mml:mi><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>h</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (W m<inline-formula><mml:math id="M79" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> nm<inline-formula><mml:math id="M80" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> sr<inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> molec<inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math id="M83" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) is the
weighting function at atmospheric level <inline-formula><mml:math id="M84" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M85" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula>
(W m<inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> nm<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> sr<inline-formula><mml:math id="M88" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) is the TOA radiance, <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(cm<inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> molec<inline-formula><mml:math id="M91" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) is the absorber cross section and <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>h</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (cm) is
the thickness of the layer.</p>
</sec>
<sec id="Ch1.S2.SS2.SSS4">
  <title>VLIDORT</title>
      <p>VLIDORT (Vector-LInearized Discrete Ordinate Radiative Transfer) was
developed by Rob Spurr at RT SOLUTIONS, Inc. The model is based on the
discrete ordinate approach to solve the radiative transfer equation in a
multi-layered atmosphere, reducing the RTE to a set of coupled linear first
order differential equations. Then, perturbation theory is applied to the
discrete ordinate solution <xref ref-type="bibr" rid="bib1.bibx53" id="paren.36"/>. Intensity and partial
derivatives of intensity with respect to atmospheric parameters and surface
parameters (i.e. weighting functions) are determined for upwelling direction
at TOA, for arbitrary angular direction. The pseudo-spherical formulation in
VLIDORT corrects for the curved atmosphere in the solar and scattered beam
(for single scattering, not for multiple scattering).</p>
      <p>Box-AMFs are derived from the altitude-dependent weighting functions determined by VLIDORT:
              <disp-formula id="Ch1.E8" content-type="numbered"><mml:math id="M93" display="block"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="normal">ln</mml:mi><mml:mi>I</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>I</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi>I</mml:mi><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula>
            <inline-formula><mml:math id="M94" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> (W m<inline-formula><mml:math id="M95" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> nm<inline-formula><mml:math id="M96" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> sr<inline-formula><mml:math id="M97" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) is the TOA radiance,
<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">gas</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the trace gas absorption optical thickness of the
layer and the term (<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>I</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mi mathvariant="normal">gas</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>) is the altitude-dependent weighting function.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>TOA reflectances</title>
      <p>As a first exercise, a base case calculation and comparison of TOA
reflectances was made to assess the performance of the four RTMs and to
obtain the structural uncertainty in TOA reflectance modelling. The base case
comparison allowed us to establish the best possible level of agreement
between RTMs by identifying differences in the RTMs performance that in more
complex settings would be difficult to recognise. Furthermore, total and
ozone optical thickness were compared to evaluate how the models agreed in
their treatment of scattering and absorption processes and whether
differences in scattering and absorption can explain possible differences
between the TOA reflectances.</p>
      <p>Basic model parameters were established as input in all RTMs (details can be
found in Table S1 in the Supplement). The basic atmospheric profile was a
33-layer midlatitude summer atmosphere <xref ref-type="bibr" rid="bib1.bibx2" id="paren.37"/>, and every group
performed their own vertical discretisation of this profile.</p>
      <p>In the RT modelling, we considered a clear-sky atmosphere, so clouds and
aerosols were not included. Rayleigh scattering and O<inline-formula><mml:math id="M100" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> absorption were
included, but Raman scattering was not included. The temperature dependence
of the ozone cross section was neglected in the reflectance calculation. TOA
reflectances were calculated at seven wavelengths, including 440 and 340 nm
which are relevant for the retrievals of NO<inline-formula><mml:math id="M101" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO, respectively. Both
scalar (i.e. without polarisation) and vector (i.e. with polarisation)
calculations were performed in most of the cases. All models applied their
particular sphericity treatments to the calculations. The surface was
considered to be a Lambertian reflector by all the RTMs. This approximation
assumes that surface reflectivity is isotropic (i.e it does not consider the
directionality of the surface reflectance distribution). The selected
geometries covered a wide range of values for solar zenith angle (SZA,
<inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), viewing zenith angle (VZA, <inline-formula><mml:math id="M103" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula>) and relative azimuth angle
(RAA, <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mi mathvariant="italic">φ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">180</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>-</mml:mo><mml:mo>|</mml:mo><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>|</mml:mo></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the
viewing direction minus solar direction). All the angles are specified with
respect to the surface. The values for SZA span the typical range of what
UV/Vis sensors are encountering in orbit, and the maximum value of VZA is
related to the higher possible values of this parameter for the future
TROPOMI instrument (<inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">72.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) <xref ref-type="bibr" rid="bib1.bibx59" id="paren.38"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>TOA reflectances simulated by four RTMs for <inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">37</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.8</mml:mn></mml:mrow></mml:math></inline-formula>), off-nadir viewing angle <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">72.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:mi mathvariant="italic">μ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula>) and
<inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mi mathvariant="italic">φ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> as a function of wavelength (in 20 nm steps). Dashed
lines represent total optical thickness computed by each RTM. Grey bands
indicate the relevant wavelengths for HCHO (340 nm) and NO<inline-formula><mml:math id="M112" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (440 nm).
Surface albedo is 0 and surface pressure is 1013 hPa.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f02.png"/>

        </fig>

      <p>All models calculate the same spectral dependency of TOA reflectance, as
shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/> (solid line). TOA reflectance increases towards
shorter wavelengths due to stronger Rayleigh scattering. TOA reflectance
simulated by the different models agrees within 1.3 % for the geometries
included in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. The dashed line in Fig. <xref ref-type="fig" rid="Ch1.F2"/> shows the
total optical thickness as a function of wavelength for DAK, SCIATRAN and
VLIDORT (McArtim does not provide this output), and is generally consistent
within 0.15 % for all wavelengths except 340 nm, where the differences are
0.5 %.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Distribution of relative model differences between TOA reflectances
simulated by four RTMs including polarisation (DAK-VLIDORT, DAK-SCIATRAN,
DAK-McArtim, VLIDORT-SCIATRAN, VLIDORT-McArtim, SCIATRAN-VLIDORT and reversed
combinations) for all geometry combinations (<inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>&lt;</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">90</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">72.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mi mathvariant="italic">φ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M117" display="inline"><mml:mn mathvariant="normal">60</mml:mn></mml:math></inline-formula>, <inline-formula><mml:math id="M118" display="inline"><mml:mn mathvariant="normal">90</mml:mn></mml:math></inline-formula>, <inline-formula><mml:math id="M119" display="inline"><mml:mn mathvariant="normal">120</mml:mn></mml:math></inline-formula>, <inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">180</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>)
(see Table S1 for exact values) at 340 nm (left panel) and 440 nm (right
panel). The dashed lines represent the median plus/minus the standard
deviation of the distribution. Surface albedo is 0 and surface pressure is
1013 hPa. Sample size in each distribution is 960.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f03.png"/>

        </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the distribution of relative differences (defined as
(<inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mo>(</mml:mo><mml:mi>a</mml:mi><mml:mo>-</mml:mo><mml:mi>b</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>a</mml:mi></mml:mrow></mml:math></inline-formula>)) between TOA reflectances simulated by the four RTMs at 340
and 440 nm. The distribution is determined by the relative differences
between all combinations of model differences, including all simulated
geometry scenarios for a surface albedo of 0 and terrain pressure of
1013 hPa. According to the standard deviation in both distributions (dashed
lines in Fig. 3), the relative differences are below 1.5 % at 340 nm and
1.1 % at 440 nm in most geometry configurations (80 % of the samples of
the distribution), including the most common retrieval scenarios. The tails
of the distributions at both wavelengths correspond to extreme viewing
geometries, i.e. for scenarios in which solar and viewing zenith angles are
both large. Mean relative differences over all RTM pairs are at most 6.4 %
for extreme geometries (<inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">87</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>,</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">72.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>),
and for shorter wavelengths. For nadir view (<inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) relative
differences are on average two times smaller than for larger VZA (<inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>≥</mml:mo><mml:msup><mml:mn mathvariant="normal">60</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) at both 340 and 440 nm.</p>
      <p>The results show strong consistency of TOA reflectance calculations for the
most common moderate viewing geometry retrieval scenarios. Relative
differences are somewhat higher for larger VZA, SZA and shorter wavelengths.
For the more extreme geometries, the light path through the atmosphere is
generally longer and photons have a higher probability of undergoing
interactions (scattering, absorption) with the atmosphere. Furthermore,
differences in the treatment of the Earth's sphericity for the extreme geometries
have a stronger influence than in close to nadir viewing geometries. These
differences will still be present in the box-AMF comparison in Sect. 3.2.
Rayleigh scattering also affects the effective photon path and it is stronger
at 340 nm than at 440 nm. Thus, small differences in the description of
Rayleigh scattering in the RTMs are more likely to lead to differences for
the extreme geometries and shorter wavelengths. The standard deviation of
differences between modelled TOA reflectances of 1.5 % (at 340 nm) and
1.1 % (at 440 nm) in this comparison can be considered to be the reflectance
structural uncertainty. The agreement in this study is better than in
previous RTM comparisons like <xref ref-type="bibr" rid="bib1.bibx66" id="text.39"/> and <xref ref-type="bibr" rid="bib1.bibx54" id="text.40"/> which
reported differences of 5 %. The detailed RTM comparison will serve as a
test bed to analyse the performance of other RTMs.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <?xmltex \opttitle{NO${}_{2}$ and HCHO altitude-dependent (box-) air mass factors}?><title>NO<inline-formula><mml:math id="M125" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO altitude-dependent (box-) air mass factors</title>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Box-AMF dependencies on forward model parameters for NO<inline-formula><mml:math id="M126" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> at
440 nm (solid lines) and HCHO at 338 nm (dashed lines)
for a clear-sky atmosphere. <bold>(a)</bold> Box-AMFs vertical profile,
<bold>(b)</bold> 950 hPa box-AMF as a function of surface albedo,
<bold>(c)</bold> 797 hPa box-AMF as a function of surface pressure,
<bold>(d)</bold> 950 hPa box-AMF as a function of cosine of SZA,
<bold>(e)</bold> 950 hPa box-AMF as a function of cosine of VZA,
<bold>(f)</bold> 950 hPa box-AMF as a function of RAA. In all panels the fixed
parameters are <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="italic">μ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.8</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">37</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>),
<inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mi mathvariant="italic">φ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">60</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, surface albedo <inline-formula><mml:math id="M130" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.05, surface
pressure <inline-formula><mml:math id="M131" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1013 hPa.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f04.png"/>

        </fig>

      <p>To calculate box-AMFs, a common vertical grid was agreed between the groups
in order to reduce the sources that might cause differences between the RTMs.
The common profile resolution was <inline-formula><mml:math id="M132" display="inline"><mml:mn mathvariant="normal">0.1</mml:mn></mml:math></inline-formula> km from the surface up to 10 km,
1 km resolution from 10 to 60 and 2 km resolution from 60 to 100 km.
NO<inline-formula><mml:math id="M133" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> box-AMFs were calculated at 440 nm and HCHO box-AMFs were calculated
at 338, 341 and 344 nm to investigate the wavelength dependency (not shown).
Box-AMFs were calculated accounting for the polarisation of light and the Earth's sphericity. The number of reference points for surface albedo was increased
and several surface pressures were added relative to the TOA reflectance
simulations in the previous section to cover a wider range of scenarios. All
settings are detailed in Table S2.</p>
      <p>Figure 4a shows that the four participating groups generally agree well on the
vertical profile shape of NO<inline-formula><mml:math id="M134" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO box-AMFs in the troposphere.
Measurement sensitivity decreases towards the surface due to the increase of
light scattering in the lower troposphere. Measurement sensitivity to HCHO is
substantially lower than to NO<inline-formula><mml:math id="M135" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, because of stronger Rayleigh scattering
at shorter wavelengths. McArtim box-AMFs have lower values in the
stratosphere (pink line), presumably reflecting the more realistic
description of atmosphere's sphericity in McArtim relative to the other
models (see Sect. 3.4 for specific sphericity effect on AMFs). The vertical
profile of McArtim shows a wavering line due to the statistical noise in the
Monte Carlo simulations (which can be reduced by increasing the number of
simulations). Figure 4b, d–f shows the NO<inline-formula><mml:math id="M136" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO box-AMF dependency on
forward model parameters (surface albedo, surface pressure, SZA, VZA and RAA)
in the lower troposphere at 950 hPa. This pressure level (close to the
surface) is especially relevant because this is where trace gas
concentrations are enhanced in polluted conditions. The sensitivity to
surface albedo at 950 hPa (Fig. 4b) is similar for all four RTMs. Box-AMFs
increase with surface albedo due to a stronger reflection of light at the
surface. This increase is particularly strong for low values of surface
albedo. For an albedo of 0.05, an increase of 0.01 in the surface albedo
results in an increase of 11 % in the NO<inline-formula><mml:math id="M137" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> box-AMF at 440 nm and of
9 % in the case of HCHO at 338 nm. The increase in the box-AMFs is less
steep for higher values of surface albedo. Thus, an accurate knowledge of
surface albedo is required, especially for low albedo values. For surface
pressure (Fig. 4c), the box-AMF (at 797 hPa) decreases with decreasing
surface pressure. For increasing terrain height, the amount of light
scattered and reflected from below 797 hPa decreases. In a more elevated
terrain, the photons undergo fewer scattering events, which tends to reduce
box-AMFs at a specific level. Models agree well in representing this
sensitivity. An error in the surface pressure of 10 hPa leads to <inline-formula><mml:math id="M138" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>2 %
errors in the lower tropospheric box-AMF values, which indicates the
importance of accurate surface pressure information that is representative
of the entire pixel area. Box-AMFs at 950 hPa show relatively weak
dependency on VZA (Fig. 4e) and RAA (Fig. 4f) and stronger dependency on high
values of SZA (Fig. 4d), but all RTMs agree well on measurement sensitivity
to geometry parameters.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Vertical profile of mean relative differences between NO<inline-formula><mml:math id="M139" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
box-AMFs (left) and HCHO box-AMFs (right) from DAK, McArtim, SCIATRAN and
VLIDORT for a wide range of satellite viewing geometry (<inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>&lt;</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">75</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>&lt;</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">72.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">0</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>&lt;</mml:mo><mml:mi mathvariant="italic">φ</mml:mi><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">180</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>), surface albedo <inline-formula><mml:math id="M143" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.05 and surface pressure 1013 hPa. Grey
bands indicate a 950 hPa atmospheric layer.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f05.png"/>

        </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F5"/> shows the vertical profile of mean relative
differences in NO<inline-formula><mml:math id="M144" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (left panel) and HCHO (right panel) box-AMFs between
all the models, for a specific surface albedo and surface height and a wide
range of solar and viewing geometries. Generally, models reproduce box-AMFs
to within 2 % for NO<inline-formula><mml:math id="M145" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and 2.6 % for HCHO. Mean relative differences
are higher at the lowest layers and around 300 hPa. This is due to
unavoidable slight differences in vertical discretisation of the
surface–atmosphere boundary and where the resolution changes from 0.1 to
1 km at 10 km altitude in the different models. Specific differences were
also found in the mid-troposphere to upper troposphere and stratosphere, where McArtim is on
average lower than the other RTMs. Those differences illustrate the different
treatments of multiple scattering within the models. McArtim accounts for
multiple scattering in a fully spherical atmosphere, whereas DAK, VLIDORT and
SCIATRAN simulate multiple scattering in a plane parallel atmosphere. In a
spherical atmosphere, less light is horizontally scattered into the line of
sight of the instrument than in a plane parallel atmosphere (see Fig. S2),
which is one of the reasons for lower box-AMFs by McArtim in the stratosphere
(visible in Fig. 4a between 200 and 0 hPa).</p>
      <p>Relative differences for 950 hPa box-AMFs are below 1.1 % for NO<inline-formula><mml:math id="M146" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and
below 2.6 % for HCHO in most geometry configurations (according to the
standard deviation of relative differences distribution for 950 hPa
box-AMFs, not shown). Higher relative differences mainly occur between
McArtim and the other models. The highest relative differences occur for
scenarios with high VZAs (<inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">72.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) (not shown), again
indicating that different Rayleigh scattering descriptions and sphericity
treatments in the radiative transfer modelling of the atmosphere are
important.</p>
      <p>This comparison indicates a good agreement between box-AMF LUTs computed
using different RTMs. The structural uncertainty in the AMF calculation due
to the choice of RTM and different interpolation schemes is 2 % for NO<inline-formula><mml:math id="M148" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
and 2.6 % for HCHO. These results suggest that a correct treatment of the
processes affecting the effective light path in the atmosphere is important
for box-AMF calculation. The vertical discretisation is also relevant in
box-AMF calculations, as demonstrated by the differences at specific
altitudes (Fig. 5) and by the box-AMF sensitivity to altitude (Fig. 4a).
Therefore, the vertical sampling of the LUT should have a fine resolution,
especially in the lower troposphere where strong gradients in NO<inline-formula><mml:math id="M149" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO
concentrations occur. The dependencies of the box-AMFs at low surface albedo
values (Fig. 4b) and to surface pressure (Fig. 4c), suggest that the number
of reference points in the LUT for these parameters should be large.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Tropospheric air mass factors</title>
      <p>In order to compute tropospheric AMFs via Eq. (<xref ref-type="disp-formula" rid="Ch1.E3"/>) we
need to interpolate the box-AMFs from the LUT for the best estimate of the
forward model parameters <bold>b</bold>. Generally a 6-D linear interpolation
(or 5-D if the vertical resolution of the LUT and the a priori profile
vertical grid are equal) is done over all the parameters on which the box-AMF
depend. For each dimension, the two closest values to the exact pixel
parameters are used to obtain the interpolated box-AMF (<inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in
Eq. <xref ref-type="disp-formula" rid="Ch1.E3"/>). This approach will introduce systematic errors
in case of non-linear dependencies of the parameters in the LUT.
Pixel-by-pixel online calculations of box-AMFs would avoid interpolation
errors. <xref ref-type="bibr" rid="bib1.bibx15" id="text.41"/> estimated the differences between online and
LUT-derived AMFs to be on average less than 1 %, for individual
measurements less than 8 %, with an upper bound of the difference of 20 %
over South America. <xref ref-type="bibr" rid="bib1.bibx38" id="text.42"/> found 1–5 % differences on
retrieved VCDs with and without LUT over China.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6" specific-use="star"><caption><p>Upper panels: total NO<inline-formula><mml:math id="M151" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> tropospheric AMFs calculated by BIRA,
IUP-UB, MPI-C and WUR. Lower panels: NO<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> model tropospheric vertical
column (from a priori TM4 profile), climatological surface albedo (from
Kleipool et al., 2008), cloud fraction (from O<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M154" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) and an
example of the relative differences between MPI-C and WUR AMFs. Only pixels
for SZA <inline-formula><mml:math id="M155" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">70</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> are shown. The selected OMI orbit is from 2
February 2005 (2005m0202-o02949-v003).</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f06.jpg"/>

        </fig>

<sec id="Ch1.S3.SS3.SSS1">
  <title>Harmonised settings</title>
      <p>Four groups used the same settings (forward model parameters, a priori
profiles, temperature and cloud correction) to calculate clear-sky and total
tropospheric NO<inline-formula><mml:math id="M157" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs for one specific OMI orbit over Australia and
East Asia on 2 February 2005 (see Fig. 6). The selected harmonised
settings were those from KNMI/WUR (see Table <xref ref-type="table" rid="Ch1.T3"/>). All groups
applied the same temperature correction (from Boersma et al., 2004, see
Eq. S1) and cloud correction via the independent pixel approximation. The aim
of this comparison was to obtain an estimate of the structural AMF
uncertainty introduced by different vertical discretisations and by different
interpolation schemes, assuming that the values of the selected forward model
parameters are true.</p>
      <p>All groups calculate similar AMF spatial patterns for the selected orbit.
Figure 6 (upper panels) shows total tropospheric NO<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs calculated by
each group. The distribution of the AMF values along the orbit is determined
by the different parameters on which AMFs depend. Lower panels in Fig. 6 show
NO<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (a priori) model vertical column, surface albedo and cloud fraction in
the orbit. At high latitudes, where surface albedo is high, AMFs are up to
3–5. Surfaces with high albedo (usually covered by snow or ice) reflect more
radiation than surfaces with lower surface albedo, and this increases the AMF
values. The effect of clouds and the a priori profile is also visible: AMFs
are generally low in cloudy regions and over polluted regions in eastern China
(<inline-formula><mml:math id="M160" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30<inline-formula><mml:math id="M161" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N), indicative of reduced sensitivity to NO<inline-formula><mml:math id="M162" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the
lowest layers of the atmosphere.</p>
      <p>The correlation between AMFs calculated by the different retrieval groups is
excellent (<inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.99</mml:mn></mml:mrow></mml:math></inline-formula>). Overall, tropospheric AMFs calculated by each of
the groups agree within 6.5 % in polluted areas and within 2.5 % in clean
remote areas for most retrieval scenarios, in line with the results from the
box-AMF LUT comparison. BIRA AMFs are on average higher than AMFs calculated by the
other groups, generally by a few percent, and IUP-UB AMFs are on average
lower for polluted and unpolluted conditions. Table 2 summarises the results
of the comparison.</p>
      <p>The largest differences are found at the edges of the OMI orbit, where viewing
zenith angles are large and light paths are long. This can be seen in the
lower right panel of Fig. 6, where the relative differences of tropospheric
NO<inline-formula><mml:math id="M164" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs between MPI-C and WUR are clearly visible at the edges of the
orbit. These differences are consistent with the higher sensitivity to
tropospheric trace gases for extreme viewing zenith angles (also shown in
Fig. 4e) in McArtim compared to DAK. Figure S1 in the Supplement shows the
relative differences between all AMFs calculated by the groups. Relative
difference distributions show patterns that reflect the spatial distribution
of surface albedo, clouds and NO<inline-formula><mml:math id="M165" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (e.g. over south-eastern Australia,
eastern China and Korea). Large differences between the groups are found in cloudy
conditions. These effects reflect the uncertainties arising from the use of
different RTM as well as from the interpolation and the vertical
discretisation of the LUT when calculating the AMFs.</p>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Statistical parameters for the comparison of total tropospheric
NO<inline-formula><mml:math id="M166" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs for polluted and unpolluted pixels (pixels with model NO<inline-formula><mml:math id="M167" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
vertical column higher or lower than <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M169" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
respectively) between the different retrieval groups for one complete orbit
from 2 February 2005 (2005m0202t0339-o02940 v003). Only pixels with effective
(i.e. radiometrically equivalent) cloud fraction <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula> are considered.
Mean, median and sigma are relative differences in % (<inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mo>(</mml:mo><mml:mi>a</mml:mi><mml:mo>-</mml:mo><mml:mi>b</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>a</mml:mi></mml:mrow></mml:math></inline-formula>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col7" align="center">Polluted pixels (#1983) </oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Diff. <?xmltex \hack{\hfill\break}?>between</oasis:entry>  
         <oasis:entry colname="col2">Mean <?xmltex \hack{\hfill\break}?>(rel. diff.)</oasis:entry>  
         <oasis:entry colname="col3">Median <?xmltex \hack{\hfill\break}?>(rel. diff.)</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M172" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula><?xmltex \hack{\hfill\break}?>(rel. diff.)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">Slope</oasis:entry>  
         <oasis:entry colname="col7">Offset</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">IUP-WUR</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M174" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.8 <inline-formula><mml:math id="M175" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M176" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.5</oasis:entry>  
         <oasis:entry colname="col4">6.4</oasis:entry>  
         <oasis:entry colname="col5">0.9968</oasis:entry>  
         <oasis:entry colname="col6">0.96</oasis:entry>  
         <oasis:entry colname="col7">0.08</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">BIRA-WUR</oasis:entry>  
         <oasis:entry colname="col2">0.5 <inline-formula><mml:math id="M177" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.02</oasis:entry>  
         <oasis:entry colname="col3">0.5</oasis:entry>  
         <oasis:entry colname="col4">0.8</oasis:entry>  
         <oasis:entry colname="col5">0.9996</oasis:entry>  
         <oasis:entry colname="col6">0.98</oasis:entry>  
         <oasis:entry colname="col7">0.02</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">BIRA-IUP</oasis:entry>  
         <oasis:entry colname="col2">3.9 <inline-formula><mml:math id="M178" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.7</oasis:entry>  
         <oasis:entry colname="col3">2.9</oasis:entry>  
         <oasis:entry colname="col4">4.8</oasis:entry>  
         <oasis:entry colname="col5">0.9967</oasis:entry>  
         <oasis:entry colname="col6">1.02</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M179" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.07</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">MPIC-WUR</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M180" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.5 <inline-formula><mml:math id="M181" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M182" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.9</oasis:entry>  
         <oasis:entry colname="col4">4.7</oasis:entry>  
         <oasis:entry colname="col5">0.9957</oasis:entry>  
         <oasis:entry colname="col6">0.99</oasis:entry>  
         <oasis:entry colname="col7">0.03</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">MPIC-IUP</oasis:entry>  
         <oasis:entry colname="col2">2.1 <inline-formula><mml:math id="M183" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.9</oasis:entry>  
         <oasis:entry colname="col3">0.5</oasis:entry>  
         <oasis:entry colname="col4">4.9</oasis:entry>  
         <oasis:entry colname="col5">0.9955</oasis:entry>  
         <oasis:entry colname="col6">1.03</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M184" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.06</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">MPIC-BIRA</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M185" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.0 <inline-formula><mml:math id="M186" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M187" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.2</oasis:entry>  
         <oasis:entry colname="col4">4.7</oasis:entry>  
         <oasis:entry colname="col5">0.9957</oasis:entry>  
         <oasis:entry colname="col6">1.01</oasis:entry>  
         <oasis:entry colname="col7">0.01</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col7" align="center">Unpolluted pixels (#23744) </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">IUP-WUR</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M188" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.4 <inline-formula><mml:math id="M189" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M190" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.3</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M191" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.3</oasis:entry>  
         <oasis:entry colname="col4">2.4</oasis:entry>  
         <oasis:entry colname="col5">0.9983</oasis:entry>  
         <oasis:entry colname="col6">0.96</oasis:entry>  
         <oasis:entry colname="col7">0.06</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">BIRA-WUR</oasis:entry>  
         <oasis:entry colname="col2">0.6 <inline-formula><mml:math id="M192" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.004</oasis:entry>  
         <oasis:entry colname="col3">0.3</oasis:entry>  
         <oasis:entry colname="col4">0.8</oasis:entry>  
         <oasis:entry colname="col5">0.9995</oasis:entry>  
         <oasis:entry colname="col6">0.98</oasis:entry>  
         <oasis:entry colname="col7">0.03</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">BIRA-IUP</oasis:entry>  
         <oasis:entry colname="col2">1.0 <inline-formula><mml:math id="M193" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04</oasis:entry>  
         <oasis:entry colname="col3">0.7</oasis:entry>  
         <oasis:entry colname="col4">1.9</oasis:entry>  
         <oasis:entry colname="col5">0.9989</oasis:entry>  
         <oasis:entry colname="col6">1.01</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M194" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.04</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">MPIC-WUR</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M195" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5 <inline-formula><mml:math id="M196" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.02</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M197" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.4</oasis:entry>  
         <oasis:entry colname="col4">2.1</oasis:entry>  
         <oasis:entry colname="col5">0.9985</oasis:entry>  
         <oasis:entry colname="col6">0.97</oasis:entry>  
         <oasis:entry colname="col7">0.06</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">MPIC-IUP</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M198" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.1 <inline-formula><mml:math id="M199" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.06</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M200" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.4</oasis:entry>  
         <oasis:entry colname="col4">2.2</oasis:entry>  
         <oasis:entry colname="col5">0.9981</oasis:entry>  
         <oasis:entry colname="col6">1.01</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M201" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.01</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">MPIC-BIRA</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M202" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.1 <inline-formula><mml:math id="M203" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.02</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M204" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.9</oasis:entry>  
         <oasis:entry colname="col4">1.7</oasis:entry>  
         <oasis:entry colname="col5">0.9990</oasis:entry>  
         <oasis:entry colname="col6">0.99</oasis:entry>  
         <oasis:entry colname="col7">0.03</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Mean relative differences between IPA and clear-sky NO<inline-formula><mml:math id="M205" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
tropospheric AMFs for different cloud fraction intervals at different cloud
pressures ranges (different colours) for a complete day of OMI measurements (2
February 2005). Left panel is for polluted conditions and right panel for
unpolluted conditions (pixels with model NO<inline-formula><mml:math id="M206" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vertical column higher or
lower than <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M208" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> respectively). The stars with
the black dashed lines show the average difference for all the cloud
pressures. Pixels with surface albedo less than 0.3 and SZA <inline-formula><mml:math id="M209" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 70<inline-formula><mml:math id="M210" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
are considered.</p></caption>
            <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f07.png"/>

          </fig>

      <p>These results demonstrate that, even when similar RTMs, box-AMFs and
identical forward model parameters are used to calculate the AMFs, there is
structural uncertainty that is introduced by the specific implementation of
different groups. First, the choice of a RTM introduces uncertainty in the
box-AMF calculation. Second, there are interpolation errors that are
intrinsic to the calculation method using Eq. (<xref ref-type="disp-formula" rid="Ch1.E3"/>), i.e.
interpolation errors in finding the AMF value from the 6-D LUT and the
vertical discretisation of the a priori profile. Overall, the average
differences between the AMFs (always below 6.5 % for cloud fractions less
than 0.2) are somewhat higher than the differences from the LUT comparison
(2 %). This means that in successive steps of the AMF calculation sources
of systematic uncertainty are added that propagate throughout the AMF
calculation process. These sources directly affect the agreement between the
AMF calculated by different groups and hence affect the AMF structural uncertainty.
6.5 % represents an upper limit value for the differences that
different RTMs and LUTs may introduce to the final AMF calculation.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p>Overview of AMF calculation methods and ancillary data used in the
round-robin experiment by various research groups.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.84}[.84]?><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="75pt"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="50pt"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="50pt"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="55pt"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="60pt"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="40pt"/>
     <oasis:colspec colnum="7" colname="col7" align="justify" colwidth="50pt"/>
     <oasis:colspec colnum="8" colname="col8" align="justify" colwidth="50pt"/>
     <oasis:colspec colnum="9" colname="col9" align="justify" colwidth="60pt"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Group and<?xmltex \hack{\hfill\break}?>reference</oasis:entry>  
         <oasis:entry colname="col2">RTM</oasis:entry>  
         <oasis:entry colname="col3">LUT<?xmltex \hack{\hfill\break}?>interpolation</oasis:entry>  
         <oasis:entry colname="col4">Surface<?xmltex \hack{\hfill\break}?>reflectivity</oasis:entry>  
         <oasis:entry colname="col5">Surface pressure</oasis:entry>  
         <oasis:entry colname="col6">Cloud <?xmltex \hack{\hfill\break}?>parameters</oasis:entry>  
         <oasis:entry colname="col7">Cloud <?xmltex \hack{\hfill\break}?>correction</oasis:entry>  
         <oasis:entry colname="col8">Aerosol<?xmltex \hack{\hfill\break}?>correction</oasis:entry>  
         <oasis:entry colname="col9">A priori<?xmltex \hack{\hfill\break}?>profile</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">BIRA-<?xmltex \hack{\hfill\break}?>IASB<?xmltex \hack{\hfill\break}?>(Sect. S1.1)</oasis:entry>  
         <oasis:entry colname="col2">VLIDORT</oasis:entry>  
         <oasis:entry colname="col3">Linear<?xmltex \hack{\hfill\break}?>in 6-D space</oasis:entry>  
         <oasis:entry colname="col4">MODIS BSA <?xmltex \hack{\hfill\break}?>and OMI Min <?xmltex \hack{\hfill\break}?>LER</oasis:entry>  
         <oasis:entry colname="col5">GMTED2010<inline-formula><mml:math id="M215" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">O<inline-formula><mml:math id="M216" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M217" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">IPA: CF <inline-formula><mml:math id="M218" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.2<?xmltex \hack{\hfill\break}?>CS: CF <inline-formula><mml:math id="M219" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.2</oasis:entry>  
         <oasis:entry colname="col8">Implicit</oasis:entry>  
         <oasis:entry colname="col9">Daily<?xmltex \hack{\hfill\break}?>TM5<?xmltex \hack{\hfill\break}?>(1<inline-formula><mml:math id="M220" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M221" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M222" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">IUP-UB<?xmltex \hack{\hfill\break}?>(Sect. S1.2)</oasis:entry>  
         <oasis:entry colname="col2">SCIATRAN</oasis:entry>  
         <oasis:entry colname="col3">Linear<?xmltex \hack{\hfill\break}?>in 6-D space</oasis:entry>  
         <oasis:entry colname="col4">Min LER<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx30" id="author.44"/><?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx30" id="year.45"/>) (v003)</oasis:entry>  
         <oasis:entry colname="col5">GMTED2010<inline-formula><mml:math id="M223" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula><?xmltex \hack{\hfill\break}?>gridded to<?xmltex \hack{\hfill\break}?>0.25<inline-formula><mml:math id="M224" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M225" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.25<inline-formula><mml:math id="M226" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">O<inline-formula><mml:math id="M227" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M228" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">IPA: CF <inline-formula><mml:math id="M229" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.1<?xmltex \hack{\hfill\break}?>CS: CF <inline-formula><mml:math id="M230" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col8">Implicit</oasis:entry>  
         <oasis:entry colname="col9">MACC-II daily<?xmltex \hack{\hfill\break}?>reanalysis<inline-formula><mml:math id="M231" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula><?xmltex \hack{\hfill\break}?>(1.125<inline-formula><mml:math id="M232" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M233" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1.125<inline-formula><mml:math id="M234" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">KNMI/WUR<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx10" id="author.46"/><?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx10" id="year.47"/>)</oasis:entry>  
         <oasis:entry colname="col2">DAK v3.31</oasis:entry>  
         <oasis:entry colname="col3">Linear <?xmltex \hack{\hfill\break}?>in 6-D space</oasis:entry>  
         <oasis:entry colname="col4">Min LER<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx30" id="author.48"/><?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx30" id="year.49"/>) (v002)</oasis:entry>  
         <oasis:entry colname="col5">Global 3 km<?xmltex \hack{\hfill\break}?>DEM<inline-formula><mml:math id="M235" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula><?xmltex \hack{\hfill\break}?>Pixel average</oasis:entry>  
         <oasis:entry colname="col6">O<inline-formula><mml:math id="M236" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M237" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">IPA</oasis:entry>  
         <oasis:entry colname="col8">Implicit</oasis:entry>  
         <oasis:entry colname="col9">Daily<?xmltex \hack{\hfill\break}?>TM4<?xmltex \hack{\hfill\break}?>(3<inline-formula><mml:math id="M238" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M239" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math id="M240" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Uni. Leicester<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx3" id="author.50"/><?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx3" id="year.51"/>, <xref ref-type="bibr" rid="bib1.bibx4" id="year.52"/>, <xref ref-type="bibr" rid="bib1.bibx5" id="year.53"/>)</oasis:entry>  
         <oasis:entry colname="col2">LIDORT v2.3</oasis:entry>  
         <oasis:entry colname="col3">Linear<?xmltex \hack{\hfill\break}?>in 4-D space</oasis:entry>  
         <oasis:entry colname="col4">Mode LER<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx30" id="author.54"/><?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx30" id="year.55"/>) (v002)</oasis:entry>  
         <oasis:entry colname="col5">GEOS-Chem <?xmltex \hack{\hfill\break}?>surface pressure</oasis:entry>  
         <oasis:entry colname="col6">O<inline-formula><mml:math id="M241" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M242" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">IPA</oasis:entry>  
         <oasis:entry colname="col8">Implicit</oasis:entry>  
         <oasis:entry colname="col9">Daily<?xmltex \hack{\hfill\break}?>GEOS-Chem<?xmltex \hack{\hfill\break}?>(2<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M244" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2.5<inline-formula><mml:math id="M245" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">MPI-C<?xmltex \hack{\hfill\break}?>(Sect. S1.3)</oasis:entry>  
         <oasis:entry colname="col2">McArtim</oasis:entry>  
         <oasis:entry colname="col3">Linear<?xmltex \hack{\hfill\break}?>in 6-D space</oasis:entry>  
         <oasis:entry colname="col4">Min LER<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx30" id="author.56"/>
<?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx30" id="year.57"/>) (v002)</oasis:entry>  
         <oasis:entry colname="col5">Global 3 km<?xmltex \hack{\hfill\break}?>DEM<inline-formula><mml:math id="M246" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> <?xmltex \hack{\hfill\break}?>Pixel average</oasis:entry>  
         <oasis:entry colname="col6">O<inline-formula><mml:math id="M247" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M248" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">IPA <inline-formula><mml:math id="M249" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 3 km<?xmltex \hack{\hfill\break}?>CS: CF <inline-formula><mml:math id="M250" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.1<?xmltex \hack{\hfill\break}?>between 2–3 km</oasis:entry>  
         <oasis:entry colname="col8">Explicit<inline-formula><mml:math id="M251" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula><?xmltex \hack{\hfill\break}?>for clouds<?xmltex \hack{\hfill\break}?>below 2 km</oasis:entry>  
         <oasis:entry colname="col9">Daily<?xmltex \hack{\hfill\break}?>TM4<?xmltex \hack{\hfill\break}?>(3<inline-formula><mml:math id="M252" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M253" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math id="M254" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">NASA-GFSC <?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx14" id="text.58"/><?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx33" id="text.59"/></oasis:entry>  
         <oasis:entry colname="col2">TOMRAD</oasis:entry>  
         <oasis:entry colname="col3">Linear<?xmltex \hack{\hfill\break}?>in 6-D space</oasis:entry>  
         <oasis:entry colname="col4">Min LER<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx30" id="author.60"/><?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx30" id="year.61"/>) (v002)</oasis:entry>  
         <oasis:entry colname="col5">Global 3 km<?xmltex \hack{\hfill\break}?>DEM<?xmltex \hack{\hfill\break}?>Pixel center</oasis:entry>  
         <oasis:entry colname="col6">O<inline-formula><mml:math id="M255" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M256" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">IPA</oasis:entry>  
         <oasis:entry colname="col8">Implicit</oasis:entry>  
         <oasis:entry colname="col9">Monthly<?xmltex \hack{\hfill\break}?>mean GMI<?xmltex \hack{\hfill\break}?>(2.5<inline-formula><mml:math id="M257" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M258" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math id="M259" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Peking Uni.<?xmltex \hack{\hfill\break}?> <xref ref-type="bibr" rid="bib1.bibx39" id="author.62"/> <?xmltex \hack{\hfill\break}?>(<xref ref-type="bibr" rid="bib1.bibx38" id="year.63"/>, <xref ref-type="bibr" rid="bib1.bibx39" id="year.64"/>)</oasis:entry>  
         <oasis:entry colname="col2">LIDORT v3.6</oasis:entry>  
         <oasis:entry colname="col3">Online <?xmltex \hack{\hfill\break}?>calculations</oasis:entry>  
         <oasis:entry colname="col4">MCD43C2 BRDF</oasis:entry>  
         <oasis:entry colname="col5">GEOS-Chem<?xmltex \hack{\hfill\break}?>(0.5<inline-formula><mml:math id="M260" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M261" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.667<inline-formula><mml:math id="M262" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6">POMINO <?xmltex \hack{\hfill\break}?>retrieval</oasis:entry>  
         <oasis:entry colname="col7">IPA</oasis:entry>  
         <oasis:entry colname="col8">Explicit <?xmltex \hack{\hfill\break}?>GEOS-Chem<?xmltex \hack{\hfill\break}?>daily AOD</oasis:entry>  
         <oasis:entry colname="col9">Daily<?xmltex \hack{\hfill\break}?>GEOS-Chem<?xmltex \hack{\hfill\break}?>(0.5<inline-formula><mml:math id="M263" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M264" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.667<inline-formula><mml:math id="M265" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><table-wrap-foot><p><inline-formula><mml:math id="M211" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> Global multi-resolution terrain
elevation data.
<inline-formula><mml:math id="M212" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> Digital elevation model data.
<inline-formula><mml:math id="M213" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> See Sect. S1 in the Supplement for more detailed
information.
<inline-formula><mml:math id="M214" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx28" id="text.43"/>.</p></table-wrap-foot></table-wrap>

</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <title>Cloud correction: IPA vs. clear-sky AMF</title>
      <p>It is important to account for the effect of clouds on the photon path
lengths in the troposphere when calculating tropospheric AMFs. There are
various approaches that are commonly used to calculate AMFs in (partly)
cloudy conditions. The independent pixel approximation (IPA), introduced in
Eq. (4) (e.g. <xref ref-type="bibr" rid="bib1.bibx43" id="altparen.65"/>), is motivated by the fact that few pixels
are completely cloud-free. Many pixels still have some degree of cloud cover,
and even small cloud fractions strongly affect the sensitivity to the trace
gas. The relevant physical effect of clouds (reduced sensitivity to trace gas
below the cloud and enhanced sensitivity to trace gas above and in the top
layer of the cloud) is explicitly taken into account in the IPA. Another
approach is to consider clear-sky AMF for scenes with a sufficiently
small cloud fraction (e.g. <xref ref-type="bibr" rid="bib1.bibx49" id="altparen.66"/>). The motivation for
using clear-sky AMFs instead of IPA is that for scenes with small cloud
fractions (e.g. <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>), retrieved cloud parameters (cloud fraction and
cloud pressure) have relatively high uncertainty. This inhibits the reliable
modelling of the effect of clouds on photon path lengths and, consequently, a
clear-sky AMF is used.</p>
      <p>To quantify the differences between the two approaches, here we compare
tropospheric NO<inline-formula><mml:math id="M267" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs calculated by WUR (see Table 3) with the IPA
approach and the clear-sky AMFs, for two complete days of OMI measurements (2
February and 16 August 2005). In polluted conditions, IPA AMFs are smaller
than clear-sky AMFs on average, with differences as large as <inline-formula><mml:math id="M268" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>40 % for cloud
fractions approaching the threshold value of 0.2 (left panel of Fig. 7). The
negative differences between IPA and clear-sky AMFs are largest for the highest
clouds, illustrating the reduced sensitivity to tropospheric NO<inline-formula><mml:math id="M269" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> below the
cloud in the IPA. IPA AMFs are larger than clear-sky AMFs for clouds situated
in the lower troposphere (cloud pressure <inline-formula><mml:math id="M270" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 900 hPa), where most NO<inline-formula><mml:math id="M271" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
pollution resides. These positive differences can be understood from the
albedo effect of residual clouds. Low, bright clouds lead to enhanced photon
scattering through the NO<inline-formula><mml:math id="M272" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> layers above the cloud level and also inside
the cloud top layer, and this increases the sensitivity to NO<inline-formula><mml:math id="M273" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. For
polluted conditions, IPA AMFs are on average smaller than clear-sky AMFs by 20 %
for cloud fractions of 0.05–0.2, and smaller by 11 % for cloud fractions
between 0.0 and 0.2.</p>
      <p>In unpolluted conditions, IPA and clear-sky AMFs are generally quite similar, with
average relative differences within 5 %. Still, there are important
differences between the two approaches. In unpolluted conditions with clouds
in the free and upper troposphere (cloud pressure <inline-formula><mml:math id="M274" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 600 hPa), IPA AMFs
are smaller because of reduced sensitivity to NO<inline-formula><mml:math id="M275" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (right panel of Fig. 7).
For clouds in the lower troposphere, IPA AMFs are larger because of the
albedo effect. The change of sign in the differences between IPA and clear-sky AMFs
now occurs near 700 hPa (instead of near 900 hPa for polluted scenes),
reflecting the more even vertical distribution of NO<inline-formula><mml:math id="M276" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in pristine
conditions compared to polluted scenes in which most NO<inline-formula><mml:math id="M277" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> resides in the
polluted boundary layer.</p>
      <p>These results indicate that the differences between using IPA or clear-sky
AMFs are especially substantial for polluted conditions and small residual
cloud fractions. Selecting a particular cloud correction approach implies
that AMF values that will be systematically different from values obtained
with the other method. In polluted conditions, the mean differences are
20–40 % for cloud fractions between 0.1 and 0.2, with cloud pressure largely
explaining the magnitude and sign of the differences. Note that the a priori
profiles used to calculate the AMFs in this section have been obtained from a
specific CTM. If a different CTM were used, the values for the differences
between IPA and clear-sky AMFs would be different, in line with the structural
uncertainty that is being discussed in this study (See Sect. 3.3.3). A
previous study by <xref ref-type="bibr" rid="bib1.bibx62" id="text.67"/> reported 30 % higher GOME tropospheric
NO<inline-formula><mml:math id="M278" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> columns retrieved using the IPA compared to retrievals using clear-sky
AMFs. Such differences are in line with the systematically lower IPA AMFs
found here. However, like the study by <xref ref-type="bibr" rid="bib1.bibx62" id="text.68"/>, we cannot clearly
recommend one AMF approach over the other. In order to make such a
recommendation, a more detailed analysis of the cloud parameter uncertainties
is needed, along with a validation of tropospheric NO<inline-formula><mml:math id="M279" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> retrievals using
different AMF approaches against independent reference data. Such a
validation exercise should preferably focus on polluted conditions with small
(0.05–0.2) residual cloud fractions.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS3">
  <title>Round-robin comparison</title>
      <p>For the round-robin comparison, each group calculated tropospheric NO<inline-formula><mml:math id="M280" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
AMFs using their preferred settings (i.e. their own preference for source of
forward model parameters, cloud and aerosol correction). We extended the
comparison and included other leading international retrieval groups
(University of Leicester, NASA and Peking University). We now have a wider
range of approaches and assumptions to better evaluate the impact that the
calculation methods and choices of forward model parameters have on the
structural uncertainty.</p>
      <p>Table 3 summarises the AMF algorithms included in this comparison. There are
several differences with the harmonised settings used in the previous
section. IUP-UB and BIRA now apply IPA only when cloud fraction exceeds 0.1
and 0.2, respectively, motivated by the high uncertainty of cloud parameters
for scenes with small cloud fractions (see Sect. 3.3.2). Peking University
accounts for the surface reflectance anisotropy and does pixel-by-pixel
online radiative transfer calculations. They also include an explicit aerosol
correction, motivated by the fact that the implicit aerosol correction breaks
down under conditions of high aerosol optical thickness and strongly absorbing
particles (<xref ref-type="bibr" rid="bib1.bibx15 bib1.bibx17" id="altparen.69"/>), which is particularly
significant in East China. MPIC applies IPA cloud correction for clouds
higher than 3 km and clear-sky AMFs for clouds between 2 and 3 km when
cloud fraction is less than 0.1. For clouds below 2 km they include a
parameterised aerosol-cloud layer in order to account for the possibility of
cloud aerosol mixtures, which might be especially relevant for AMF
calculation in scenarios where trace gas is most abundant in the lowest part
of the troposphere. Among all the groups, five different chemistry transport
models for the a priori NO<inline-formula><mml:math id="M281" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profiles are used.</p>
      <p>Different groups use different LUTs for their AMF calculations, and POMINO
uses pixel-by-pixel online radiative transfer calculations. The LUTs are
different in several aspects, such as the RTMs used to create them and the number of
reference points for each dimension. All these differences affect the AMF
structural uncertainty. Based on the discussion in previous sections we
consider that the use of different LUTs introduces a structural uncertainty
of the order of 6.5 %.</p>
      <p>Most of the surface albedo values used in the retrievals come from the
<xref ref-type="bibr" rid="bib1.bibx30" id="text.70"/> database, which is based on OMI surface reflectance
climatology. However, due to the different representations of surface
reflectance within this database (mode and min LER), only three retrieval
groups use the exact same albedo values. We investigated whether this could bias
the estimation of the AMF structural uncertainty. We recalculated the AMF
structural uncertainty with two retrievals that use the exact same albedo
values and with three that use different albedo values. These estimated that AMF
structural uncertainties were of similar magnitude and therefore we can
conclude that the fact that the surface albedo values come from the
<xref ref-type="bibr" rid="bib1.bibx30" id="text.71"/> database is not a clear driver of the overall structural
uncertainty calculation.</p>
      <p>The agreement of AMFs from this round-robin exercise quantifies the overall
AMF structural uncertainty. The comparison with seven groups allowed us to
calculate a mean AMF as a reference (which is not necessarily the true AMF)
value which can be considered a state-of-the-art AMF value. For a
representative ensemble mean AMF, we required all groups to have a valid
(unflagged) AMF value at a pixel location. We selected two different days (2
February and 16 August 2005) in winter and summer to identify possible
seasonality effects in the agreement of the AMFs.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>Tropospheric NO<inline-formula><mml:math id="M282" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs calculated by each of the groups for a
complete day of OMI measurements (2 February 2005). Lower panels show an
example of cloud fraction and surface albedo used by KNMI/WUR (showed as
example; see Table <xref ref-type="table" rid="Ch1.T3"/>) to calculate the AMFs. Groups apply
different filters to the measurements which explains the different gaps
(grey).</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f08.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>Ratio of tropospheric NO<inline-formula><mml:math id="M283" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs by each group to the ensemble mean
(left axis, bars) and the correlation coefficient (right axis, cross) for two
complete days of OMI measurements on 2 February 2005 (blue) and 16 August 2005
(green) over the globe for polluted (left panel) and unpolluted (right
panel) pixels. The error bars correspond to the standard deviation. Only
pixels for SZA <inline-formula><mml:math id="M284" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 60<inline-formula><mml:math id="M285" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and cloud fraction <inline-formula><mml:math id="M286" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.2 are
considered in the analysis.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f09.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS3.SSSx1" specific-use="unnumbered">
  <title>Round robin: identical cloud parameters</title>
      <p>First we compare the six groups that use the same cloud parameters. In contrast
to what we found in the harmonised settings comparison, the global maps of
tropospheric AMF calculated by each group using their preferred settings
(Fig. <xref ref-type="fig" rid="Ch1.F8"/>) show pronounced differences in several regions. For
example, over the Sahara desert, where surface albedo is high (see lower
panel on Fig. <xref ref-type="fig" rid="Ch1.F8"/>), AMFs differ by up to 15 %. Small
differences in the albedo values can lead to high differences in the AMFs,
especially for surface albedos lower than 0.3 (see Fig. 4b). Over central
Africa, AMFs differ in situations where cloud fraction is close to the
typically applied threshold of 0.2 (left lower panel in Fig. <xref ref-type="fig" rid="Ch1.F8"/>).</p>
      <p>We compared global AMF calculations from all individual groups against the
pixel mean AMF from six groups (Peking University only calculates AMFs over
China). Figure 9 shows the average ratio of the AMF by each group to the
ensemble mean AMF (bars) and the correlation (crosses) for polluted conditions (NO<inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M288" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, left panel) and unpolluted conditions (NO<inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>&lt;</mml:mo><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M290" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, right panel). Over polluted
regions (for pixels with SZA <inline-formula><mml:math id="M291" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 60<inline-formula><mml:math id="M292" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and effective cloud
fraction <inline-formula><mml:math id="M293" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.2), the agreement between the six groups is within (minimum–maximum) 12–42 %
in February and within 10–31 % in August. BIRA AMFs are 14 % higher than
the ensemble mean, and WUR AMFs are 18 % lower, suggesting considerable
structural uncertainty.</p>
      <p>Over unpolluted regions the agreement is better: AMFs from the different
groups agree within 8.5–18 % in both February and August, which implies a
smaller structural uncertainty (Table S6 provides a detailed summary of the
comparison).</p>
      <p>In order to assess which forward model parameters explain most of the AMF
structural uncertainty, we analysed AMF differences from groups that use
identical cloud parameters and implicit aerosol correction (BIRA, University
of Leicester, NASA and WUR). Between these four groups, the only different
forward model parameters are surface albedo, a priori NO<inline-formula><mml:math id="M294" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profile and
surface pressure. To investigate which of these parameters best explains the
AMF variability, we correlated differences between a particular parameter
(<inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>A</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M296" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>NO<inline-formula><mml:math id="M297" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and <inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>P</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) with the
corresponding AMF differences (<inline-formula><mml:math id="M299" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AMF). For each particular parameter,
we required the differences in the other parameters to be small (surface
albedo within <inline-formula><mml:math id="M300" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.02, surface pressure within <inline-formula><mml:math id="M301" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>50 hPa and a priori
NO<inline-formula><mml:math id="M302" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vertical columns within <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M304" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) so we could
isolate the effect of one parameter only while keeping sufficient pixels for
statistical significance.</p>
      <p>We focus on explaining the differences between BIRA and WUR here, since these
were of the order of 30 % (Fig. 9). We explored the correlations between
BIRA-WUR AMF differences and differences between assumed surface pressures,
albedos and NO<inline-formula><mml:math id="M305" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>vertical columns and profile shapes; results are shown in
Fig. S3 and Table S3. We find that surface pressure differences do not
explain the large systematic AMF differences, and that surface albedo
differences explain WUR and BIRA AMF differences, especially in winter when
NO<inline-formula><mml:math id="M306" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> is found close to the surface and AMFs are more sensitive to albedo
variations than in summer. In our ensemble, the WUR-BIRA AMF differences are
highly sensitive to the differences between the a priori NO<inline-formula><mml:math id="M307" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profiles
used, especially in summer. NO<inline-formula><mml:math id="M308" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profiles are vertically more elevated in
TM5 (used by BIRA) than in TM4 (used by WUR) (right panel of Fig. S3), as
diagnosed by their 20 hPa lower effective NO<inline-formula><mml:math id="M309" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> pressures (pressure levels
weighted by NO<inline-formula><mml:math id="M310" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> sub-column in that level). The confinement of the trace
gas to lower atmospheric layers and the higher concentrations explains the
systematically lower AMF values for WUR compared to BIRA.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p>Tropospheric NO<inline-formula><mml:math id="M311" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs calculated by each of the groups for a
complete day of OMI measurements (2 February 2005) over China
(20–53<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N/80–130<inline-formula><mml:math id="M313" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W). Only pixels for
SZA <inline-formula><mml:math id="M314" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 60<inline-formula><mml:math id="M315" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, effective cloud fraction <inline-formula><mml:math id="M316" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.5 and surface
albedo <inline-formula><mml:math id="M317" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.3 are shown.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f10.png"/>

          </fig>

      <p>Selecting a specific chemistry transport model thus influences the AMF
structural uncertainty via differences in the profile shape. These
differences in the profile shape depend on the different characteristics of
the models (e.g. spatial and temporal resolution and parameterisation of
different processes in the atmosphere). Previous studies analysed how using
different CTMs influences the NO<inline-formula><mml:math id="M318" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> retrievals due to the change in the
profile shapes used to calculate the AMF values. <xref ref-type="bibr" rid="bib1.bibx26" id="text.72"/> compared
retrievals using fine- and coarse-resolution models and concluded that using
one AMF value for a large heterogeneous scene can lead to a 50 % bias in the
retrieved NO<inline-formula><mml:math id="M319" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> columns.<xref ref-type="bibr" rid="bib1.bibx65" id="text.73"/> reported much smaller average
differences of 10 % in retrieved NO<inline-formula><mml:math id="M320" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> columns, mainly due to different
emission inventories used in TM4 (3<inline-formula><mml:math id="M321" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M322" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2<inline-formula><mml:math id="M323" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) and GEOS-Chem
(0.5<inline-formula><mml:math id="M324" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M325" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.67<inline-formula><mml:math id="M326" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>). According to <xref ref-type="bibr" rid="bib1.bibx34" id="text.74"/>,
temporal resolution also influences a priori profile shapes; they
found differences in the retrieved NO<inline-formula><mml:math id="M327" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> column for individual days up to
40 % that were mostly explained by day-to-day wind direction variations
that were not captured in the monthly averages.</p>
      <p>All these aspects influence the estimation of retrieval (and AMF) theoretical
uncertainties. In order to quantitatively estimate the effect of one model
characteristic alone (e.g. the spatial resolution) on the AMF structural
uncertainty it would be necessary to compare AMF calculated with the same
approach but with just that specific characteristic being different in the
profile shapes generated by the CTM. Such a specific sensitivity analysis has
not been done in this study but should be considered in future AMF
comparisons. To test the robustness of our structural uncertainty estimate,
we did some experiments by simulating the effect of high-resolution a priori
profiles on AMF values. <xref ref-type="bibr" rid="bib1.bibx32" id="text.75"/>, <xref ref-type="bibr" rid="bib1.bibx44" id="text.76"/> and
<xref ref-type="bibr" rid="bib1.bibx26" id="text.77"/> reported that AMFs calculated using coarse-resolution a
priori profiles are overestimated over polluted areas by approximately
50 %. Over remote locations, there is little spatial variability in NO<inline-formula><mml:math id="M328" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
distributions, and the a priori profile spatial resolution is less important
in the AMF calculation. When including synthetic AMF emulating the use of
high-resolution a priori profiles over polluted areas, the estimated AMF
structural uncertainty is not strongly affected (increases by 3–6 %). This
indicates that with the ensemble of retrievals used in our comparison the
estimate of the structural uncertainty in the AMF calculation may be
considered a robust estimate.</p>
      <p>The findings in this subsection indicate that quality assurance efforts for
<xref ref-type="bibr" rid="bib1.bibx30" id="text.78"/> retrievals should not focus just on column validation,
but also target the validation of the a priori NO<inline-formula><mml:math id="M329" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profiles used in the
AMF calculations. It is worth noting that using averaging kernels in satellite applications
(e.g. when comparing retrieved NO<inline-formula><mml:math id="M330" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> columns with modelled NO<inline-formula><mml:math id="M331" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> distributions
or observed NO<inline-formula><mml:math id="M332" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profiles) will reduce the representativeness errors in the
comparisons associated with the a priori trace gas profile used in the
retrieval scheme (e.g. <xref ref-type="bibr" rid="bib1.bibx12" id="altparen.79"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p>Ratio of tropospheric NO<inline-formula><mml:math id="M333" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs by each group to the ensemble mean
(left axis, bars) and the correlation coefficient (right axis, cross) for two
complete days of OMI measurements on 2 February 2005 (blue) and 16 August 2005
(green) for polluted (left panel) and unpolluted (right panel) pixels over
China. The error bars correspond to the standard deviation. Only pixels for
SZA <inline-formula><mml:math id="M334" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 60<inline-formula><mml:math id="M335" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and cloud fraction <inline-formula><mml:math id="M336" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.2 are considered in the
analysis.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f11.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS3.SSSx2" specific-use="unnumbered">
  <title>Round robin: different cloud parameters</title>
      <p>In the previous section, we found that differences between a priori NO<inline-formula><mml:math id="M337" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
profiles and surface albedo values are the main cause of AMF structural
uncertainty when cloud parameters are identical in AMF calculation
approaches. Here we extend our round-robin experiment by including AMF
calculations from Peking University
(<xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx38 bib1.bibx39" id="altparen.80"/>) that were done with different
cloud parameters (Table <xref ref-type="table" rid="Ch1.T3"/>) to the O<inline-formula><mml:math id="M338" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M339" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cloud parameters
used by all other groups. The comparison of Peking University and WUR AMFs
thus allowed us to investigate the relative importance of differences in
cloud parameters in driving AMF structural uncertainty. Our comparison of
AMFs is confined to China, since Peking University calculations are only
available over that region.</p>
      <p>All groups calculate similar spatial patterns for the AMFs over China
(Fig. 10). In the polluted north-east (Beijing area) AMFs are lower due to
the reduced sensitivity to NO<inline-formula><mml:math id="M340" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the lower troposphere. In the western
part over the Tibet region, AMFs are higher due to the presence of ice and
snow in February. Figure 11 shows the average ratio of each group's AMF to
the ensemble mean AMF (bars) and the correlation (crosses) for polluted conditions (left panel) and unpolluted conditions (right panel). In polluted
regions, AMFs generally agree within 37 % in February and within 20 % in
August, and correlations are 0.7–0.9. Peking University AMFs are higher than
the ensemble mean AMF, especially in August when they are 25 % higher. WUR
and MPI-C AMFs are lower than the mean AMF, especially in August (20 %
lower). In unpolluted regions the agreement is better: within 26 % in
February and within 16 % in August, with a correlation of 0.8–0.95 (see
Table S7).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><caption><p>Box-AMFs at 25 hPa as a function of cosine of SZA (left panel) and
as a function of cosine of VZA (right panel). In the left panel, VZA is
constant at 37<inline-formula><mml:math id="M341" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:mi mathvariant="italic">μ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.8</mml:mn></mml:mrow></mml:math></inline-formula>), and in the right panel, SZA is
constant at 37<inline-formula><mml:math id="M343" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.8</mml:mn></mml:mrow></mml:math></inline-formula>).</p></caption>
            <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f12.png"/>

          </fig>

      <p>To estimate the effect of differences in cloud parameters on AMF structural
uncertainty, we analysed differences in AMF calculated by WUR and Peking
University. The Peking University AMF calculations (and the cloud parameters)
were based on a version of the POMINO retrieval using clouds retrieved with
an implicit aerosol treatment (i.e. similar to KNMI/WUR). We explored the
correlations between Peking University and WUR AMFs differences and
differences in cloud pressure (<inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and NO<inline-formula><mml:math id="M346" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vertical columns by
requiring the differences in other forward model parameters to be relatively
small. Results are shown in Fig. S4 and Table S4. AMF differences are partly
explained by differences in the effective cloud pressures (Table S4): the
O<inline-formula><mml:math id="M347" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>-O<inline-formula><mml:math id="M348" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cloud pressures used by WUR are systematically lower (by
100 hPa) than those by Peking University, in line with <xref ref-type="bibr" rid="bib1.bibx64" id="text.81"/>.
This results in stronger screening of below-cloud NO<inline-formula><mml:math id="M349" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> pollution, and
consequently lower AMFs by WUR compared to Peking University AMFs. Peking
University uses NO<inline-formula><mml:math id="M350" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profiles from GEOS-Chem. These profiles tend to peak
at higher vertical levels than those from TM4
(<xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx12" id="altparen.82"/>), thus contributing to higher AMFs by
Peking University compared to WUR AMFs. In summary, the more elevated NO<inline-formula><mml:math id="M351" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
profiles in combination with less elevated clouds explain the substantially
higher AMF by Peking University than WUR AMFs.</p>
</sec>
<sec id="Ch1.S3.SS3.SSSx3" specific-use="unnumbered">
  <title>Round robin: explicit aerosol correction</title>
      <p>The POMINO retrieval by Peking University explicitly corrects for the
presence of aerosols in the atmosphere by including profiles of aerosol
optical properties simulated by the GEOS-Chem model (and constrained by MODIS
AOD on a monthly basis) in the radiative transfer model and in the cloud
retrieval (<xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx39" id="altparen.83"/>). All the other groups
except MPIC-C (see Table <xref ref-type="table" rid="Ch1.T3"/> and Sect. S1.3) assume that the
aerosol effects are implicitly accounted for in the cloud retrievals
(<xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx15" id="altparen.84"/>). Including an explicit aerosol correction
influences AMF values indirectly through changes in cloud fraction and cloud
pressure and directly in the radiative transfer simulations. We quantify the
effect of the choice of aerosol correction in AMF structural uncertainty by
comparing AMFs calculated by Peking University with (abbreviated
AMF<inline-formula><mml:math id="M352" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">aer</mml:mi></mml:msub></mml:math></inline-formula> hereafter) and without (AMF) explicit aerosol correction.</p>
      <p>In conditions with substantial aerosol pollution (AOD <inline-formula><mml:math id="M353" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.5), the selection
of one aerosol correction approach over another can result in an AMF
structural uncertainty of 45 % over China. The sign of the AMF differences
depends mainly on the altitude of the aerosol layer relative to the NO<inline-formula><mml:math id="M354" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
profile (see e.g. <xref ref-type="bibr" rid="bib1.bibx35" id="altparen.85"/>). We find that AMF<inline-formula><mml:math id="M355" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">aer</mml:mi></mml:msub></mml:math></inline-formula> are
on average 55 % smaller in situations when aerosols are located above the
NO<inline-formula><mml:math id="M356" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> layer, mainly because cloud pressures are lower on average (more than
350 hPa), resulting in stronger screening of NO<inline-formula><mml:math id="M357" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (upper panel of Fig. S5;
Table S5). When the aerosol vertical distribution is similar to that of
NO<inline-formula><mml:math id="M358" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, AMF<inline-formula><mml:math id="M359" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">aer</mml:mi></mml:msub></mml:math></inline-formula> are on average 45 % higher, mostly because of
much smaller cloud fractions, resulting in reduced screening of below-cloud
NO<inline-formula><mml:math id="M360" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (lower panel in Fig. S5; Table S5). An additional factor is that when
aerosols are mixed with NO<inline-formula><mml:math id="M361" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, they increase the optical light path and
enhance AMF values. These results are in line with <xref ref-type="bibr" rid="bib1.bibx39" id="text.86"/> where an
evaluation of the influence of the aerosols in the NO<inline-formula><mml:math id="M362" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> retrieval is
analysed for 2012.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Stratospheric air mass factors</title>
      <p>We pointed out in Sect. 3.2 that differences in the description of the
atmosphere's sphericity could lead to differences in stratospheric AMFs,
especially for extreme geometries. Here we investigate the differences
between stratospheric NO<inline-formula><mml:math id="M363" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs calculated with DAK and McArtim radiative
transfer models. The McArtim model simulates the radiative transfer in an
atmosphere that is spherical for incoming, single-scattered and
multiple-scattered light. DAK's atmosphere is spherical for incoming
sunlight, but plane-parallel for scattered sunlight. Based on these
differences, we may expect the average photon paths at high altitudes in
McArtim to be shorter than in DAK, as diffuse photon contributions (from
near-horizontal directions) in McArtim are bound to finite spherical
atmosphere (as illustrated in Fig. S2). Consequently, stratospheric AMFs in
McArtim are smaller (Fig. 4a). Figure 12 shows that McArtim box-AMFs (at
25 hPa) are systematically lower than those from DAK by 1–2 % for
moderate viewing geometries, with more significant differences (up to <inline-formula><mml:math id="M364" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5 to
<inline-formula><mml:math id="M365" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10 %) when solar zenith and viewing angles are large.</p>
      <p>A direct validation of stratospheric NO<inline-formula><mml:math id="M366" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMFs is difficult, but comparing
simulated stratospheric slant column densities against observed NO<inline-formula><mml:math id="M367" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> SCDs
constitutes a test of the radiative transfer models. Here we use OMI-observed
(un-destriped) SCDs over the Pacific from the OMNO2A v1 product
(<xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx10" id="altparen.87"/>) as a benchmark. The NO<inline-formula><mml:math id="M368" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> columns over the
Pacific Ocean are dominated by stratospheric NO<inline-formula><mml:math id="M369" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, so we expect simulated
stratospheric SCD values to be similar or somewhat smaller than the observed,
total SCDs. Simulated SCDs are the product of modelled VCDs (from data
assimilation in TM4) and the stratospheric AMFs calculated with DAK and
McArtim. Figure 13 (left panel) indicates (for high solar and viewing zenith
angles) that stratospheric SCDs simulated with McArtim are close to, or
slightly below the OMI SCDs. In contrast, the stratospheric SCDs simulated
with DAK overtop the OMI SCDs, because of the higher stratospheric AMFs from
that model. This inevitably leads to negative values for
SCD-SCD<inline-formula><mml:math id="M370" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">strat</mml:mi></mml:msub></mml:math></inline-formula>, and consequently to reduced or even negative
tropospheric NO<inline-formula><mml:math id="M371" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> VCDs at high latitudes. Indeed, DOMINO v2 retrievals
(using DAK stratospheric AMFs) are known to suffer from negative tropospheric
VCDs at high latitudes especially in the summer hemisphere <xref ref-type="bibr" rid="bib1.bibx7" id="paren.88"/>
when solar zenith angles are largest. For small solar zenith angles in the
tropics, the differences between DAK and McArtim stratospheric slant columns
are smaller, but still appreciable at the edges of the swath (Fig. 13, right
panel).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><caption><p>Averaged OMI total NO<inline-formula><mml:math id="M372" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> SCD (black line) as a function of viewing
zenith angle for solar zenith angles between 70 and 80<inline-formula><mml:math id="M373" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (left panel) and
20–30<inline-formula><mml:math id="M374" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (right panel) (OMI orbit 02940 on 2 February 2005). The blue
line indicates the estimated stratospheric SCDs based on DOMINO v2
stratospheric VCDs and DAK stratospheric AMFs, and the purple line represents
the stratospheric SCDs based on DOMINO v2 stratospheric VCDs and McArtim
stratospheric AMFs. The only difference between the DAK and McArtim-based
stratospheric slant columns is the use of the radiative transfer model; all
other relevant parameters (TM4 assimilated stratospheric column, cloud
parameters, albedo, NO<inline-formula><mml:math id="M375" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profile shape) are identical.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/10/759/2017/amt-10-759-2017-f13.png"/>

        </fig>

      <p>We tested whether possible errors in the diurnal cycle of stratospheric
NO<inline-formula><mml:math id="M376" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> could explain the overestimated slant columns for extreme viewing
geometries. We did so by imposing stratospheric NO<inline-formula><mml:math id="M377" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> vertical columns that
are either constant with OMI row number (i.e. with local time) or increase
(as N<inline-formula><mml:math id="M378" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M379" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:math></inline-formula> photolysis, NO<inline-formula><mml:math id="M380" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentrations build up) at a rate of
approximately <inline-formula><mml:math id="M381" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.15</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M382" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M383" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, i.e. by <inline-formula><mml:math id="M384" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M385" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from the left to the right side of the
orbit (Fig. S6a). These estimates correspond to the range of increase rates
at high latitudes in summer reported in the literature (e.g.
<xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx16 bib1.bibx24" id="altparen.89"/>). Our tests show that, for these
scenarios, simulated SCDs based on McArtim generally stay within the
observational constraints of the OMI SCD patterns but that the simulated SCDs
based on DAK are still exceeding the observed SCDs (Fig. S6b–c). McArtim
provides a better physical description of photon transport in the
stratosphere. The results above are not yet fully conclusive; a complete test
would require the implementation of McArtim (instead of DAK) in the data
assimilation scheme, or a dedicated validation of NO<inline-formula><mml:math id="M386" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> columns with
independent reference data in situations with extreme viewing geometries.
Nevertheless, our results clearly hint at McArtim as the RTM providing the
more realistic stratospheric AMFs, and we will test this assumption further
in the remainder of the QA4ECV project.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions and recommendations</title>
      <p>We have analysed the AMF calculation process for NO<inline-formula><mml:math id="M387" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO
satellite retrievals from seven different retrieval groups in detail. By comparing
approaches for every step of the AMF calculation process we have identified
the main sources of structural uncertainty and we have traced back these
uncertainties to their underlying causes. We have estimated the structural
uncertainty in the NO<inline-formula><mml:math id="M388" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> AMF calculation, which results from methodological
choices and from preferences and assumptions made in the calculation process.
Structural uncertainty is relevant beyond theoretical algorithm uncertainty,
which typically only addresses the propagation of errors within the context
of one particular retrieval algorithm.</p>
      <p>The choice of RTM for TOA reflectance and box-AMF calculation introduces an
average uncertainty of 2–3 %. The detailed comparison showed that
state-of-the-art RTMs are in good agreement. Particularly for DAK, this is
the first time that box-AMF calculations are extensively tested against those
calculated with other RTMs. The McArtim model simulates systematically lower
box-AMFs in the stratosphere, which we attribute to the model's geometrically
more realistic description of photon scattering in a spherical atmosphere.
The four European retrieval groups agree within 6 % in their calculation of
NO<inline-formula><mml:math id="M389" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> tropospheric AMFs when identical ancillary data (surface albedo,
terrain height, cloud parameters and a priori trace gas profile) and cloud
correction are used. This demonstrates that the selection of RTM and the
interpolation operations lead to modest uncertainty, which is intrinsic to
the calculation method chosen and therefore cannot be avoided.</p>
      <p><?xmltex \hack{\newpage}?>When retrieval groups use their preference for ancillary data along with
their preferred cloud and aerosol correction, we find that the structural
uncertainty of the AMF calculation is 42 % over polluted regions and 31 %
over unpolluted regions. Table <xref ref-type="table" rid="Ch1.T4"/> shows the escalation of
the structural uncertainty with every step of the AMF calculation. The steep
increase from 6 to 42 % strongly suggests that it is not the models or the
calculation method but the assumptions and choices made to represent the
state of the atmosphere that introduce most structural uncertainty in the AMF
calculation. The structural uncertainty is of similar magnitude as the
theoretical uncertainties found in algorithm error propagation studies which
confirms that there is a substantial systematic component in trace gas
satellite retrieval uncertainties.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4"><caption><p>Average relative structural uncertainty for every step of the AMF
calculation following the comparison process shown in Fig. 1. This includes
the modelling of TOA reflectance (<inline-formula><mml:math id="M390" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), calculation of box-AMF LUT
(<inline-formula><mml:math id="M391" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), tropospheric AMFs using harmonised settings (<inline-formula><mml:math id="M392" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and
the overall structural uncertainty from AMF using preferred settings
(<inline-formula><mml:math id="M393" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi>M</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M394" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi>M</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">NO<inline-formula><mml:math id="M398" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">1.1 %</oasis:entry>  
         <oasis:entry colname="col3">2.6 %</oasis:entry>  
         <oasis:entry colname="col4">6 %</oasis:entry>  
         <oasis:entry colname="col5">31–42 %</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">HCHO</oasis:entry>  
         <oasis:entry colname="col2">1.5 %</oasis:entry>  
         <oasis:entry colname="col3">2.6 %</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>Sensitivity studies for one particular algorithm indicate that the choice for
cloud correction (IPA or clear-sky AMF for small cloud fractions) is a strong
source of structural uncertainty especially for polluted conditions with
residual cloud fractions of 0.05–0.2 (on average an structural uncertainty
of 20 %). The choice for aerosol correction (explicitly or implicitly via
the cloud correction) introduces an average uncertainty of 50 %, especially
when aerosol loading is substantial. Selecting trace gas a priori profiles
from different chemistry transport models, surface albedo from different
data sets and cloud parameters from different cloud retrievals contributes
substantially to structural uncertainty in the AMFs. These findings point to
the need for detailed validation experiments designed to specifically test
cloud and aerosol correction methods under relevant conditions (strong
pollution, residual cloud fractions of 0.1–0.2). Not only should the retrieved
NO<inline-formula><mml:math id="M399" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> column itself be validated, but the a priori vertical
NO<inline-formula><mml:math id="M400" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> profile, the cloud and aerosol distributions and the surface albedo
values should also be compared in detail to independent reference
measurements.</p>
      <p>The magnitude of the structural uncertainty in AMF calculations is
significant, and is caused mainly by methodological differences and
particular preferences for ancillary data between different retrieval groups.
This study provides evidence of the need for improvement of the different
ancillary data sets, including uncertainties of the forward model parameters
used in the retrievals for a better agreement in the AMF calculation. This
will significantly decrease AMF structural uncertainty towards the levels
desired in user requirement studies (<inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> %). As there is no “true”
AMF value to be used as reference, it is difficult to decide which approach
and which ancillary data are best. For this reason, future research
should include a thorough validation against independent reference data,
specifically in the situations where AMF structural uncertainty has the highest
impact.</p>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/amt-10-759-2017-supplement" xlink:title="pdf">doi:10.5194/amt-10-759-2017-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><ack><title>Acknowledgements</title><p>This research has been supported by the FP7 Project Quality Assurance for
Essential Climate Variables (QA4ECV), grant No. 607405. Andreas Hilboll and
Andreas Richter acknowledge funding by DLR in the scope of the Sentinel-5
Precursor verification project (grant 50EE1247). UoL acknowledges the use of
the ALICE and SPECTRE High Performance Computing Facility at the University
of Leicester. We would like to thank the two anonymous referees for the
useful interactive discussion in the review process.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: H. Worden<?xmltex \hack{\newline}?> Reviewed by: two
anonymous referees</p></ack><ref-list>
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  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Structural uncertainty in air mass factor calculation for NO<sub>2</sub>  and HCHO satellite retrievals</article-title-html>
<abstract-html><p class="p">Air mass factor (AMF) calculation is the largest source of uncertainty in
NO<sub>2</sub> and HCHO satellite retrievals in situations with enhanced trace gas
concentrations in the lower troposphere. Structural uncertainty arises when
different retrieval methodologies are applied within the scientific community to
the same satellite observations. Here, we address the issue of AMF structural
uncertainty via a detailed comparison of AMF calculation methods that are
structurally different between seven retrieval groups for measurements from
the Ozone Monitoring Instrument (OMI). We estimate the escalation of
structural uncertainty in every sub-step of the AMF calculation process. This
goes beyond the algorithm uncertainty estimates provided in state-of-the-art
retrievals, which address the theoretical propagation of uncertainties for
one particular retrieval algorithm only. We find that top-of-atmosphere
reflectances simulated by four radiative transfer models (RTMs) (DAK,
McArtim, SCIATRAN and VLIDORT) agree within 1.5 %. We find that different
retrieval groups agree well in the calculations of altitude resolved AMFs
from different RTMs (to within 3 %), and in the tropospheric AMFs (to
within 6 %) as long as identical ancillary data (surface albedo, terrain
height, cloud parameters and trace gas profile) and cloud and aerosol
correction procedures are being used. Structural uncertainty increases
sharply when retrieval groups use their preference for ancillary data, cloud
and aerosol correction. On average, we estimate the AMF structural
uncertainty to be 42 % over polluted regions and 31 % over unpolluted
regions, mostly driven by substantial differences in the a priori trace gas
profiles, surface albedo and cloud parameters. Sensitivity studies for one
particular algorithm indicate that different cloud correction approaches
result in substantial AMF differences in polluted conditions (5 to 40 %
depending on cloud fraction and cloud pressure, and 11 % on average) even
for low cloud fractions ( &lt;  0.2) and the choice of aerosol correction
introduces an average uncertainty of 50 % for situations with high
pollution and high aerosol loading. Our work shows that structural
uncertainty in AMF calculations is significant and that it is mainly caused by
the assumptions and choices made to represent the state of the atmosphere. In
order to decide which approach and which ancillary data are best for AMF
calculations, we call for well-designed validation exercises focusing on
polluted conditions in which AMF structural uncertainty has the highest impact on
NO<sub>2</sub> and HCHO retrievals.</p></abstract-html>
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