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  <front>
    <journal-meta><journal-id journal-id-type="publisher">AMT</journal-id><journal-title-group>
    <journal-title>Atmospheric Measurement Techniques</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1867-8548</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-11-5941-2018</article-id><title-group><article-title>Nitrogen dioxide and formaldehyde measurements from the GEOstationary Coastal and Air Pollution Events (GEO-CAPE) Airborne Simulator over Houston, Texas</article-title><alt-title>GCAS measurements of <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></alt-title>
      </title-group><?xmltex \runningtitle{GCAS measurements of {$\chem{NO_{{2}}}$} and {$\chem{CH_{{2}}O}$}}?><?xmltex \runningauthor{C. R. Nowlan et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Nowlan</surname><given-names>Caroline R.</given-names></name>
          <email>cnowlan@cfa.harvard.edu</email>
        <ext-link>https://orcid.org/0000-0002-8718-9752</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Liu</surname><given-names>Xiong</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Janz</surname><given-names>Scott J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Kowalewski</surname><given-names>Matthew G.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Chance</surname><given-names>Kelly</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-7339-7577</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff4">
          <name><surname>Follette-Cook</surname><given-names>Melanie B.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Fried</surname><given-names>Alan</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>González Abad</surname><given-names>Gonzalo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8090-6480</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Herman</surname><given-names>Jay R.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9146-1632</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Judd</surname><given-names>Laura M.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Kwon</surname><given-names>Hyeong-Ahn</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3586-148X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9 aff10">
          <name><surname>Loughner</surname><given-names>Christopher P.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff11">
          <name><surname>Pickering</surname><given-names>Kenneth E.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Richter</surname><given-names>Dirk</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff12">
          <name><surname>Spinei</surname><given-names>Elena</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Walega</surname><given-names>James</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Weibring</surname><given-names>Petter</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9567-3803</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff13">
          <name><surname>Weinheimer</surname><given-names>Andrew J.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Atomic and Molecular Physics Division, Harvard–Smithsonian Center for Astrophysics, Cambridge, MA 02138, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Goddard Earth Sciences Technology and Research, Universities Space Research Association, Columbia, MD 21046, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Goddard Earth Sciences Technology and Research, Morgan State University, Baltimore, MD 21251, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Institute for Arctic and Alpine Research, University of Colorado, Boulder, CO 80303, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Joint Center for Earth Systems Technology, University of Maryland, Baltimore County, Baltimore, MD 21201, USA</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>NASA Langley Research Center, Hampton, VA 23666, USA</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>School of Earth and Environmental Sciences, Seoul National University, Seoul, Republic of Korea</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>NOAA Air Resources Laboratory, College Park, MD 20740, USA</institution>
        </aff>
        <aff id="aff10"><label>10</label><institution>Earth System Science Interdisciplinary Center/Cooperative Institute for Climate and Satellites – Maryland,<?xmltex \hack{\break}?> University of Maryland, College Park, MD 20740, USA</institution>
        </aff>
        <aff id="aff11"><label>11</label><institution>Department of Atmospheric and Oceanic Science, University of Maryland, College Park, College Park, MD 20742, USA</institution>
        </aff>
        <aff id="aff12"><label>12</label><institution>Department of Electrical and Computer Engineering, Virginia Tech, Blacksburg, VA 24061, USA</institution>
        </aff>
        <aff id="aff13"><label>13</label><institution>Atmospheric Chemistry Observations &amp; Modeling Laboratory, National Center for Atmospheric Research,<?xmltex \hack{\break}?> Boulder, CO 80307, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Caroline R. Nowlan (cnowlan@cfa.harvard.edu)</corresp></author-notes><pub-date><day>30</day><month>October</month><year>2018</year></pub-date>
      
      <volume>11</volume>
      <issue>11</issue>
      <fpage>5941</fpage><lpage>5964</lpage>
      <history>
        <date date-type="received"><day>15</day><month>May</month><year>2018</year></date>
           <date date-type="rev-request"><day>12</day><month>July</month><year>2018</year></date>
           <date date-type="rev-recd"><day>6</day><month>October</month><year>2018</year></date>
           <date date-type="accepted"><day>11</day><month>October</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018.html">This article is available from https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018.html</self-uri><self-uri xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018.pdf</self-uri>
      <abstract>
    <?pagebreak page5942?><p id="d1e347">The GEOstationary Coastal and Air Pollution Events (GEO-CAPE)
Airborne Simulator (GCAS) was developed in support of NASA's decadal survey
GEO-CAPE geostationary satellite mission. GCAS is an airborne push-broom
remote-sensing instrument, consisting of two channels which make
hyperspectral measurements in the ultraviolet/visible (optimized for air
quality observations) and the visible–near infrared (optimized for ocean
color observations). The GCAS instrument participated in its first intensive
field campaign during the Deriving Information on Surface Conditions from
Column and Vertically Resolved Observations Relevant to Air Quality
(DISCOVER-AQ) campaign in Texas in September 2013. During this campaign, the
instrument flew on a King Air B-200 aircraft during 21 flights on 11 days to
make air quality observations over Houston, Texas. We present GCAS trace gas
retrievals of nitrogen dioxide (<inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and formaldehyde
(<inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>), and compare these results with trace gas columns derived
from coincident in situ profile measurements of <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> made by instruments on a P-3B aircraft, and with <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
observations from ground-based Pandora spectrometers operating in direct-sun
and scattered light modes. GCAS tropospheric column measurements correlate
well spatially and temporally with columns estimated from the P-3B
measurements for both <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.89</mml:mn></mml:mrow></mml:math></inline-formula>) and <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.54</mml:mn></mml:mrow></mml:math></inline-formula>) and with Pandora direct-sun (<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.85</mml:mn></mml:mrow></mml:math></inline-formula>) and scattered light
(<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.94</mml:mn></mml:mrow></mml:math></inline-formula>) observed <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns. Coincident GCAS columns agree
in magnitude with <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> P-3B-observed columns to
within 10 % but are larger than scattered light Pandora tropospheric
<inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns by 33 % and direct-sun Pandora <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
columns by 50 %.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e559">The GEOstationary Coastal and Air Pollution Events (GEO-CAPE) Airborne
Simulator (GCAS) is an airborne hyperspectral remote-sensing instrument
that was developed in support of future Earth-observing geostationary satellite
missions. GCAS was originally developed by NASA Goddard Space Flight Center's
(GSFC) Radiometric Calibration and Flight Development Laboratory as a
simulator for GEO-CAPE, a NASA decadal survey mission for observing pollution
and ocean color from geostationary orbit <xref ref-type="bibr" rid="bib1.bibx25" id="paren.1"/>. GCAS is now
also a test bed instrument for the Tropospheric Emissions: Monitoring of
POllution (TEMPO) instrument <xref ref-type="bibr" rid="bib1.bibx19 bib1.bibx107" id="paren.2"/>, which will
monitor air quality over North America from a geostationary orbit. TEMPO is
the ultraviolet–visible–near-infrared (UV–Vis–NIR) air quality component of GEO-CAPE and
is scheduled for launch in the 2019–2021 time frame. As a satellite airborne
simulator, GCAS provides an algorithm development test bed for GEO-CAPE and
TEMPO, serves as a satellite analogue during field campaigns, and will
eventually act as a validation instrument when geostationary satellite
instruments are on orbit.</p>
      <p id="d1e568">GCAS is a push-broom remote-sensing instrument consisting of two
spectrometers. The first spectrometer operates in the UV–Vis region of
the spectrum, where observations can be made of several atmospheric
constituents of interest to air quality. The second spectrometer operates in
the Vis–NIR for measurements focused on ocean color. In
this paper, we focus on air quality observations of nitrogen dioxide
(<inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and formaldehyde (<inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) using data from the
UV–Vis channel collected during the Deriving Information on Surface
Conditions from Column and Vertically Resolved Observations Relevant to Air
Quality (DISCOVER-AQ) campaign in Texas during September 2013. <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> have spectral absorption signatures in the UV–Vis
channel and are two core operational data products of future geostationary
air quality instruments.</p>
      <p id="d1e619">Nitrogen oxides (<inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are of central importance to
air quality and atmospheric chemistry. <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is involved in
the formation of photochemical ozone and fine aerosol particles, with
implications for both surface air quality and climate. Both short- and
long-term enhanced <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are associated with increased
mortality <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx63" id="paren.3"/>. <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions can
also lead to excess nitrogen deposition <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx66" id="paren.4"/>.
Globally, the major sources of <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are combustion, lightning
and soils. In populated regions, sources are typically dominated by
combustion of fuel for transportation and industry. The relatively strong
<inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> spectral absorption features at ultraviolet <xref ref-type="bibr" rid="bib1.bibx105" id="paren.5"/>
and visible <xref ref-type="bibr" rid="bib1.bibx58 bib1.bibx6 bib1.bibx73 bib1.bibx10" id="paren.6"/>
wavelengths have been used for over 2 decades to derive global maps of
<inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from several sun-synchronous satellite sensors in low Earth
orbit.</p>
      <p id="d1e723">Formaldehyde (<inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) is found in the Earth's atmosphere due to the
oxidation of both methane and the non-methane volatile organic compounds
(NMVOCs) that result from biogenic and anthropogenic activity and fires
<xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx29 bib1.bibx30" id="paren.7"><named-content content-type="post">and references therein</named-content></xref>.
Industrial activity and fires can also be direct sources of <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx31" id="paren.8"/>. The absorption signature of <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> in the
ultraviolet has permitted its detection from the same nadir-viewing satellite
instruments that measure <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx17 bib1.bibx23 bib1.bibx24 bib1.bibx33 bib1.bibx34" id="paren.9"/>. Its short lifetime of <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula>–3 h (around local noon) means that satellite-observed <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> can be
used as a proxy of NMVOC emissions <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx106 bib1.bibx89" id="paren.10"/>.</p>
      <p id="d1e815"><inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> amounts over industrial regions and urban areas have been
mapped at high spatial resolution by several recently developed airborne
push-broom sensors <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx71 bib1.bibx81 bib1.bibx46 bib1.bibx67 bib1.bibx62 bib1.bibx93 bib1.bibx94 bib1.bibx97 bib1.bibx9" id="paren.11"/>.
Airborne remote-sensing <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> measurements have previously been made
from aircraft using limb-viewing geometry by airborne multi-axis differential
optical absorption spectroscopy (AMAX-DOAS) <xref ref-type="bibr" rid="bib1.bibx2" id="paren.12"/> and by the
whisk-broom scanning technique (where the cross-track spatial dimension is
provided by mechanical scanning) using the Airborne Compact Atmospheric
Mapper (ACAM) <xref ref-type="bibr" rid="bib1.bibx52" id="paren.13"/>. Operated by the NASA GSFC Radiometric
Calibration and Flight Development Laboratory, ACAM is a precursor instrument
to GCAS and has also been used to measure <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and ozone
<xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx45" id="paren.14"/>. To the best of our knowledge, the GCAS
measurements presented here are the first published <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
observations from an airborne push-broom nadir mapper.</p>
      <p id="d1e878">GCAS flew in its first field campaign during the DISCOVER-AQ campaign in
Texas in 2013. In the following sections, we present and validate trace gas
retrievals of <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> from the GCAS instrument
during DISCOVER-AQ Texas. Section 2 describes the GCAS instrument and
measurement approach. Section 3 describes the DISCOVER-AQ Texas campaign
deployment, measurements from GCAS and relevant ground-based spectrometers
and in situ aircraft instruments, and the atmospheric models used in data
analysis. Section 4 presents the trace gas retrievals, including the spectral
fitting used to derive <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> slant columns, and
air mass factor (AMF) calculations. Section 5 describes the vertical column results
from the campaign. Section 6 presents comparisons of GCAS observations with
other coincident observations of <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<?pagebreak page5943?><sec id="Ch1.S2">
  <title>The GCAS instrument</title>
      <p id="d1e960">The GCAS instrument is a nadir-looking hyperspectral instrument consisting of
two Offner spectrometers operating at wavelengths 300–490 nm (UV–Vis,
air quality channel) and 480–900 nm (Vis–NIR, ocean color channel). The
instrument has dimensions of
48 <inline-formula><mml:math id="M46" display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M47" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 48 <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M49" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 46 <inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> and a mass of
36 <inline-formula><mml:math id="M51" display="inline"><mml:mi mathvariant="normal">kg</mml:mi></mml:math></inline-formula>. We briefly describe the GCAS instrument below; a more detailed
description of the instrument and laboratory characterization can be found in
<xref ref-type="bibr" rid="bib1.bibx41" id="text.15"/>.</p>
      <p id="d1e1009">Both the air quality and ocean color spectrometers in the GCAS instrument use
charge-coupled device (CCD) array detectors to measure solar radiation backscattered from the surface
and atmosphere. The push-broom technique used by GCAS provides data for
constructing two-dimensional maps beneath the aircraft, and it is also employed
by satellite instruments such as the Ozone Monitoring Instrument (OMI)
<xref ref-type="bibr" rid="bib1.bibx48" id="paren.16"/> and Ozone Mapping Profiler Suite (OMPS) nadir mapper
<xref ref-type="bibr" rid="bib1.bibx26" id="paren.17"/>. In these instruments, one axis of the CCD array detector
provides spectral information, while the other CCD axis provides spatial
cross-track information below the aircraft or satellite. The second spatial
dimension is provided by the movement of the aircraft or satellite in its
flight track.</p>
      <p id="d1e1018">The UV–Vis air quality channel consists of a thermoelectrically cooled
<inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mn mathvariant="normal">1072</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1024</mml:mn></mml:mrow></mml:math></inline-formula> CCD detector array measuring an image with
1072 wavelengths in the spectral dimension and 1024 positions in the spatial
dimension across the flight track, with a spectral sampling of 0.2 <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>
and spectral resolution of <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.57</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M55" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>. Polarization sensitivity
is reduced by the use of a dual-wedge crystal quartz and fused-silica
depolarizer fitted between the slit and instrument fore-optics. The
Vis–NIR ocean color channel uses a <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mn mathvariant="normal">1004</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1002</mml:mn></mml:mrow></mml:math></inline-formula> CCD array to
collect spectra with a spectral sampling of 0.8 <inline-formula><mml:math id="M57" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> and resolution of
2.8 <inline-formula><mml:math id="M58" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>, and has an order sorting filter to reduce second-order
grating effects. The spectrometer units are operated at a temperature of
20 <inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and are stable to 0.25 <inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C 40 min after a nominal
takeoff to a typical cruise altitude <xref ref-type="bibr" rid="bib1.bibx41" id="paren.18"/>. In addition to
the two spectrometers, a video camera is also included in the housing for the
purpose of collecting relevant scene information.</p>
      <p id="d1e1105">The GCAS instrument fore-optics collect backscattered light below the
aircraft through a common fused-silica window. The full field of view (FOV)
of the air quality channel covers 41<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in the cross-track dimension,
and the instantaneous FOV (IFOV) along the flight track is 0.8 mrad. At a
typical flight altitude of 9 <inline-formula><mml:math id="M62" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>, this results in a swath width on the
ground of about 6.7 <inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>. The ocean color channel full FOV is
70<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, with an IFOV of 1.2 mrad. All observations in this study use the
UV–Vis air quality channel.</p>
      <p id="d1e1141">Spectra are spatially averaged in post-processing to increase the
signal-to-noise ratio for air quality trace gas observations. NASA GSFC
typically produces averaged Level 1B calibrated spectra at 21 cross-track
positions, at a spatial resolution of 250 <inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> across track and
500 <inline-formula><mml:math id="M66" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> along track from a <inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> flight altitude, with a
resulting signal-to-noise ratio of <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">360</mml:mn></mml:mrow></mml:math></inline-formula> at 340 <inline-formula><mml:math id="M70" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">540</mml:mn></mml:mrow></mml:math></inline-formula>
at 440 <inline-formula><mml:math id="M72" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>. GCAS does not have a zenith sky reference measurement
capability, unlike the Geostationary Trace gas and Aerosol Sensor
Optimization (GeoTASO) <xref ref-type="bibr" rid="bib1.bibx67" id="paren.19"/> or ACAM <xref ref-type="bibr" rid="bib1.bibx52" id="paren.20"/> airborne
instruments also operated by the NASA GSFC. As a result, the reference
spectra required by the GCAS trace gas retrievals must be derived from nadir
observations over clean areas with relatively low pollution.</p>
</sec>
<sec id="Ch1.S3">
  <title>DISCOVER-AQ Texas 2013</title>
      <p id="d1e1222">DISCOVER-AQ (<uri>http://discover-aq.larc.nasa.gov/</uri>, last access: 23 October 2018) was a suborbital-class NASA
Earth Venture mission consisting of four major field campaigns (Maryland
2011, California 2013, Texas 2013 and Colorado 2014) whose goal was to
improve air quality monitoring by satellites. During the campaigns, NASA's
King Air B-200 (remote sensing) and P-3B (in situ) aircraft made measurements
of trace gases, aerosols and meteorological variables, while balloon-borne,
ship-based, mobile and stationary instruments collected large amounts of in
situ and remote-sensing data.</p>
      <p id="d1e1228">As part of the remote-sensing component of DISCOVER-AQ, NASA GSFC deployed
the airborne ACAM scanning instrument during the Maryland 2011
<xref ref-type="bibr" rid="bib1.bibx51 bib1.bibx52 bib1.bibx45" id="paren.21"/> and California 2013 campaigns, and the
GCAS instrument during the Texas 2013 and Colorado 2014 campaigns.
Additionally, the first test flights of the GeoTASO airborne instrument,
another geostationary airborne simulator, were performed during the Texas
<xref ref-type="bibr" rid="bib1.bibx67" id="paren.22"/> and Colorado <xref ref-type="bibr" rid="bib1.bibx22" id="paren.23"/> campaigns from the NASA
HU-25C Falcon aircraft. Preliminary GCAS and GeoTASO <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
observations were compared in a previous paper <xref ref-type="bibr" rid="bib1.bibx67" id="paren.24"/>.</p>
      <p id="d1e1254">The DISCOVER-AQ Texas campaign took place in September 2013. The campaign
aircraft, sondes and ground-based instruments were based in and around
Houston, Texas, an urban area with large emission contributions from both
transportation and the petrochemical industry, and air quality often
influenced by land–sea breezes. Figure <xref ref-type="fig" rid="Ch1.F1"/> shows
the location of the 10 DISCOVER-AQ ground sites with Pandora spectrometers
which GCAS overflew and a day of flight tracks from the King Air B-200 and
P-3B aircraft. Flight paths were chosen so that the aircraft passed over
eight existing ground sites with surface air quality monitors several times
per day, in support of the mission goal of investigating the relationship
between trace gas columns and surface air quality.</p><?xmltex \hack{\newpage}?>
<?pagebreak page5944?><sec id="Ch1.S3.SS1">
  <title>GCAS observations</title>
      <p id="d1e1265">During the DISCOVER-AQ Texas campaign in September 2013, the NASA King Air
B-200 carried the GCAS instrument for remote sensing of trace gases and
aerosols, as well as the NASA High Spectral Resolution Lidar-2 (HSRL-2)
instrument <xref ref-type="bibr" rid="bib1.bibx35" id="paren.25"/> for the purpose of measuring aerosol profiles below the
aircraft. The B-200 typically flew at a cruise altitude of <inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M75" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>, with occasional descents to avoid cirrus clouds. Table 1
summarizes the 26 GCAS flights (21 for air quality and 5 for ocean color),
which took place on 13 days. Most flights were designed to coincide with P-3B
flight paths. The B-200 aircraft was based at Ellington Field in southeast
Houston and typically flew a morning flight, refueled and then flew an
afternoon flight. Each B-200 flight over Houston consisted of two overpasses
of nearly the same flight path, so that there are typically four GCAS
overpasses of Houston each day. The ocean color flights involved collecting
data over the Gulf of Mexico in support of the ocean color component of
GEO-CAPE. In this study, we focus only on the air quality flights over the
Houston area.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e1290">Map of Houston area showing sample flight tracks for the King Air
B-200 (GCAS) and the P-3B aircraft on 6 September 2013, and ground sites
where Pandora spectrometers were located. Major roads are shown in yellow.
ExxonMobil Baytown and Texas City are large petrochemical and petroleum
refinery complexes. The Baytown complex lies near the entrance to the main
part of the Houston Ship Channel industrial area, which ends 6.5 km to the
east of the downtown. The red triangle shows the location of the observations
used to calculate the GCAS reference spectra.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f01.jpg"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Pandora observations</title>
      <p id="d1e1308">Total column observations of <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> were made from 15 ground-based
Pandora spectrometers viewing in direct-sun (DS) mode <xref ref-type="bibr" rid="bib1.bibx36" id="paren.26"/> at 11 sites during the DISCOVER-AQ Texas campaign. GCAS overflew 14 of these
spectrometers at 10 sites, which are summarized in Table 2. Pandora
<inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is determined at a temporal resolution of 90 s using the ratio
of direct-sun spectra to a reference spectrum derived by a
top-of-the-atmosphere Langley extrapolation using spectra collected on a
clear day with low <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx36" id="paren.27"/>. Spectra are fit from
400 to 440 <inline-formula><mml:math id="M79" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> with <inline-formula><mml:math id="M80" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cross sections interpolated to 264 <inline-formula><mml:math id="M81" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx96" id="paren.28"/> and <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at 225 <inline-formula><mml:math id="M83" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx8" id="paren.29"/>. At solar zenith angles (SZAs) less than 80<inline-formula><mml:math id="M84" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, the
observed DS slant column is converted to vertical total column using a simple
geometric air mass factor <xref ref-type="bibr" rid="bib1.bibx36" id="paren.30"/>. Pandora DS <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
measurements have a nominal precision of <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.7</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and accuracy of <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.7</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Pandora observations with fitting
root mean square <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.005</mml:mn></mml:mrow></mml:math></inline-formula> and relative error <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> % are included in this study, to
exclude possible cloud-contaminated measurements.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p id="d1e1512">Summary of GCAS flights during DISCOVER-AQ Texas 2013. Times are local time (LT: UTC <inline-formula><mml:math id="M92" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> 5 h). Days with P-3B aircraft flights are denoted by an X in the rightmost column.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.89}[.89]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Date</oasis:entry>
         <oasis:entry colname="col2">Description</oasis:entry>
         <oasis:entry colname="col3">Flight time</oasis:entry>
         <oasis:entry colname="col4">Flight time</oasis:entry>
         <oasis:entry colname="col5">P-3B ?</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">(AM)</oasis:entry>
         <oasis:entry colname="col4">(PM)</oasis:entry>
         <oasis:entry colname="col5"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">4 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:46–12:05</oasis:entry>
         <oasis:entry colname="col4">13:37–17:12</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">6 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:47–12:04</oasis:entry>
         <oasis:entry colname="col4">13:59–17:13</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">10 September</oasis:entry>
         <oasis:entry colname="col2">Ocean color</oasis:entry>
         <oasis:entry colname="col3">07:57–10:10</oasis:entry>
         <oasis:entry colname="col4">15:03–17:19</oasis:entry>
         <oasis:entry colname="col5"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">11:41–12:59</oasis:entry>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">11 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:47–12:06</oasis:entry>
         <oasis:entry colname="col4">13:39–16:50</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">12 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:47–10:44</oasis:entry>
         <oasis:entry colname="col4">13:42–17:00</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">13 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:41–12:14</oasis:entry>
         <oasis:entry colname="col4">13:56–17:17</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">14 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">07:53–11:23</oasis:entry>
         <oasis:entry colname="col4">12:26–15:52</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">17 September</oasis:entry>
         <oasis:entry colname="col2">Ocean color</oasis:entry>
         <oasis:entry colname="col3">07:55–11:11</oasis:entry>
         <oasis:entry colname="col4">13:45–17:09</oasis:entry>
         <oasis:entry colname="col5"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">18 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:43–12:16</oasis:entry>
         <oasis:entry colname="col4">14:06–17:31</oasis:entry>
         <oasis:entry colname="col5"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">24 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:42–12:00</oasis:entry>
         <oasis:entry colname="col4">13:12–16:25</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">25 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:45–12:02</oasis:entry>
         <oasis:entry colname="col4">13:50–17:10</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">26 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:40–11:50</oasis:entry>
         <oasis:entry colname="col4">14:18–17:41</oasis:entry>
         <oasis:entry colname="col5">X</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">27 September</oasis:entry>
         <oasis:entry colname="col2">Houston</oasis:entry>
         <oasis:entry colname="col3">08:39–12:04</oasis:entry>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p id="d1e1825">DISCOVER-AQ sites with Pandora spectrometers overflown by GCAS. The
Pandora ID is a identification number given to each individual Pandora
instrument. Asterisks indicate Pandoras used for MAX-DOAS measurements; all
other Pandoras were used solely for direct-sun (DS) measurements. The mean
GCAS overpass time of Pandora sites is 10:07 LT (earliest:
08:18 LT; latest: 11:51 LT) for morning flights and 15:25 LT (earliest:
12:51 LT; latest: 17:12 LT) for afternoon flights.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.99}[.99]?><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Site</oasis:entry>
         <oasis:entry colname="col2">Latitude</oasis:entry>
         <oasis:entry colname="col3">Longitude</oasis:entry>
         <oasis:entry colname="col4">Pandora ID</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(<inline-formula><mml:math id="M93" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M94" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Channelview</oasis:entry>
         <oasis:entry colname="col2">29.803</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.126</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P26</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Conroe</oasis:entry>
         <oasis:entry colname="col2">30.350</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.425</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P31</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Deer Park</oasis:entry>
         <oasis:entry colname="col2">29.670</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.128</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P32</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Galveston</oasis:entry>
         <oasis:entry colname="col2">29.254</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">94.861</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P34</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Northwest Harris</oasis:entry>
         <oasis:entry colname="col2">30.039</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.674</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P30</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">County</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">La Porte</oasis:entry>
         <oasis:entry colname="col2">29.672</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.065</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P38<inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mo>∗</mml:mo></mml:msup></mml:math></inline-formula>, P39</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Manvel Croix</oasis:entry>
         <oasis:entry colname="col2">29.520</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.392</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P33</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Moody Tower</oasis:entry>
         <oasis:entry colname="col2">29.718</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.341</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P28, P35<inline-formula><mml:math id="M104" display="inline"><mml:msup><mml:mi/><mml:mo>∗</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Smith Point</oasis:entry>
         <oasis:entry colname="col2">29.546</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">94.787</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P8, P29<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mo>∗</mml:mo></mml:msup></mml:math></inline-formula>, P36</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">West Houston</oasis:entry>
         <oasis:entry colname="col2">29.833</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">95.657</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">P18</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p id="d1e2167">Fitting details and fitted parameters used in GCAS trace gas retrievals. “n/a” means not applicable.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Parameter</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> retrieval</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Fitting window</oasis:entry>
         <oasis:entry colname="col2">420.0–465.0 nm</oasis:entry>
         <oasis:entry colname="col3">328.5–356.5 nm</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cross section</oasis:entry>
         <oasis:entry colname="col2"><xref ref-type="bibr" rid="bib1.bibx96" id="text.31"/>, 294 <inline-formula><mml:math id="M111" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><xref ref-type="bibr" rid="bib1.bibx96" id="text.32"/>, 294 <inline-formula><mml:math id="M112" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> cross section</oasis:entry>
         <oasis:entry colname="col2">n/a</oasis:entry>
         <oasis:entry colname="col3"><xref ref-type="bibr" rid="bib1.bibx16" id="text.33"/>, 300 <inline-formula><mml:math id="M114" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cross section</oasis:entry>
         <oasis:entry colname="col2"><xref ref-type="bibr" rid="bib1.bibx8" id="text.34"/>, 218 and 295 K</oasis:entry>
         <oasis:entry colname="col3"><xref ref-type="bibr" rid="bib1.bibx8" id="text.35"/>, 218 and 295 K</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> vapor cross section</oasis:entry>
         <oasis:entry colname="col2"><xref ref-type="bibr" rid="bib1.bibx77" id="text.36"/>, 288 K, 1 <inline-formula><mml:math id="M117" display="inline"><mml:mi mathvariant="normal">atm</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">n/a</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M118" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">BrO</mml:mi></mml:mrow></mml:math></inline-formula> cross section</oasis:entry>
         <oasis:entry colname="col2">n/a</oasis:entry>
         <oasis:entry colname="col3"><xref ref-type="bibr" rid="bib1.bibx104" id="text.37"/>, 228 K</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cross section</oasis:entry>
         <oasis:entry colname="col2"><xref ref-type="bibr" rid="bib1.bibx95" id="text.38"/>, 293 <inline-formula><mml:math id="M121" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><xref ref-type="bibr" rid="bib1.bibx95" id="text.39"/>, 293 <inline-formula><mml:math id="M122" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Undersampling</oasis:entry>
         <oasis:entry colname="col2">
                    <xref ref-type="bibr" rid="bib1.bibx18" id="text.40"/>
                  </oasis:entry>
         <oasis:entry colname="col3">
                    <xref ref-type="bibr" rid="bib1.bibx18" id="text.41"/>
                  </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Ring spectrum</oasis:entry>
         <oasis:entry colname="col2">
                    <xref ref-type="bibr" rid="bib1.bibx20" id="text.42"/>
                  </oasis:entry>
         <oasis:entry colname="col3">
                    <xref ref-type="bibr" rid="bib1.bibx20" id="text.43"/>
                  </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Scaling polynomial</oasis:entry>
         <oasis:entry colname="col2">Fifth order</oasis:entry>
         <oasis:entry colname="col3">Fifth order</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Baseline polynomial</oasis:entry>
         <oasis:entry colname="col2">Fourth order</oasis:entry>
         <oasis:entry colname="col3">Fourth order</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Wavelength shift</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?pagebreak page5945?><p id="d1e2503">Pandoras also operated in multi-axis sky-scanning mode (MAX-DOAS) measuring
lower-tropospheric <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> distribution and tropospheric columns at the
La Porte, Moody Tower and Smith Point sites. Pandora head sensors
sequentially pointed at 1, 2, 3, 4, 6, 8, 10, 15, 20, 30, 40 and 90<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
elevation angles from the horizon with a field of view of 1.6<inline-formula><mml:math id="M125" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>.
Azimuth angles were chosen to ensure an unobstructed view down to the horizon
and were 320<inline-formula><mml:math id="M126" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> from north at La Porte, 45<inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> at Moody Tower and
270<inline-formula><mml:math id="M128" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> at Smith Point. Differential slant column densities of
<inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> within a single scan were calculated using a
zenith sky reference spectrum. A temperature-dependent <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
absorption cross section (linear and constant terms) and Ring, <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cross sections (see Table 3 for references) were used in
the MAX-DOAS fitting window 425–490 nm. The profile inversion was performed
using the maximum a posteriori optimal estimation method <xref ref-type="bibr" rid="bib1.bibx75" id="paren.44"/>
with aerosol and gas weighting functions calculated using  the Vector Linearized Discrete Ordinate Radiative Transfer (VLIDORT) model
<xref ref-type="bibr" rid="bib1.bibx87" id="paren.45"/>. Tropospheric columns were also estimated using a
geometrical approach using <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M135" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns derived
from 15<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> elevation angle measurements when inversions failed.</p>
      <p id="d1e2679">The Pandora dataset contains observations from two Pandora instruments placed
at the Moody Tower site at the University of Houston, 70 <inline-formula><mml:math id="M137" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> above the
surface. We correct for the column in the bottom 70 <inline-formula><mml:math id="M138" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> of the
atmosphere using in situ observations at the base and top of the towers
collected every 5 <inline-formula><mml:math id="M139" display="inline"><mml:mi mathvariant="normal">min</mml:mi></mml:math></inline-formula> by the University of Houston following
<xref ref-type="bibr" rid="bib1.bibx67" id="text.46"/>. The in situ measurements indicated that <inline-formula><mml:math id="M140" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
within these altitudes was usually well mixed at the overpasses. This
correction varies in magnitude from <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.7</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for different GCAS overpasses.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>P-3B aircraft observations</title>
      <p id="d1e2771">The P-3B aircraft carried a suite of in situ instruments in order to profile the
atmosphere during the campaign. Profiles were collected during aircraft
spirals near eight DISCOVER-AQ ground sites, with each site typically
overflown two or three times each day. Depending on the site and flight, the
aircraft typically flew between a lowermost altitude of 0–300 m and an
uppermost altitude of 3.5–5 km. The typical radius of a spiral was 4–5 km.</p>
      <p id="d1e2774"><?xmltex \hack{\newpage}?>The National Center for Atmospheric Research's (NCAR) chemiluminescence
instrument (P-CL) <xref ref-type="bibr" rid="bib1.bibx74" id="paren.47"/> measured in situ <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
concentrations from the P-3B. P-CL observations of <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> have
uncertainties of 0.02 <inline-formula><mml:math id="M146" display="inline"><mml:mi mathvariant="normal">ppbv</mml:mi></mml:math></inline-formula> in precision and 10 % in accuracy.</p>
      <p id="d1e2810">The NCAR Differential Frequency Generation Absorption Spectrometer (DFGAS)
<xref ref-type="bibr" rid="bib1.bibx102 bib1.bibx103" id="paren.48"/> measured in situ <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
concentrations from the P-3B. The DFGAS instrument collects data with a
temporal resolution of 1 s, with a 15 s background zero-air
addition period every 60 to 120 s. This addition captures and removes
both inlet/sample cell <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> outgassing and optical noise.
For a typical spiral, the temporal resolution translates to a vertical
resolution of approximately 5 <inline-formula><mml:math id="M149" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>. The 1 s measurements have a
precision of <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M151" display="inline"><mml:mi mathvariant="normal">ppbv</mml:mi></mml:math></inline-formula> (upper limit) and an estimated accuracy
of 4 % at the 1<inline-formula><mml:math id="M152" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> level.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Model simulations</title>
      <p id="d1e2880">This study uses model-simulated trace gas profiles for radiative transfer
calculations in order to determine vertical column densities from observed
slant column densities. Tropospheric simulations are performed with the
Environmental Protection Agency's (EPA) Community Multiscale Air Quality
(CMAQ) version 5.0.2 modeling system <xref ref-type="bibr" rid="bib1.bibx11" id="paren.49"/> over the campaign
domain at a spatial resolution of <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and a temporal
resolution of 20 min. The model has 45 vertical levels from the surface
to 50 hPa. The model's vertical resolution ranges from 22 <inline-formula><mml:math id="M155" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at the
surface to <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M157" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at an altitude of 2 <inline-formula><mml:math id="M158" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>, further
increasing to <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">650</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M160" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> by the aircraft flight altitude. CMAQ
simulations are driven by offline meteorology from the Advanced Research
Weather and Forecasting (WRF-ARW) model <xref ref-type="bibr" rid="bib1.bibx83" id="paren.50"/> via the
Meteorology-Chemistry Interface Processor (MCIP) <xref ref-type="bibr" rid="bib1.bibx68" id="paren.51"/>.
<xref ref-type="bibr" rid="bib1.bibx56" id="text.52"/> describe the CMAQ and WRF modeling approach used for the
DISCOVER-AQ Texas campaign in detail.</p>
      <p id="d1e2968">Stratospheric <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles used in the study are estimated using
the PRATMO chemical box model <xref ref-type="bibr" rid="bib1.bibx72 bib1.bibx60" id="paren.53"/> from
simulated profiles provided as a function of month, solar zenith angle and
latitude. Stratospheric ozone profiles are from the September 2013 monthly
climatology derived at <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> from the OMI ozone profile
product <xref ref-type="bibr" rid="bib1.bibx54" id="paren.54"/> up to 0.3 hPa.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>GCAS trace gas retrievals</title>
      <p id="d1e3015">The GCAS vertical column density retrieval uses a two-step approach. First,
we derive the slant column density (SCD) by directly fitting a modeled
spectrum to the observed spectrum, starting from a reference spectrum derived
from observations over an unpolluted area. Second, we convert SCD to a
vertical column density (VCD) using an AMF that represents
the<?pagebreak page5946?> path of light through the atmosphere based on the viewing geometry and
radiative transfer calculations.</p>
      <p id="d1e3018">The GCAS trace gas retrieval algorithms used in this paper are derived from
the Smithsonian Astrophysical Observatory (SAO) trace gas algorithms
originally developed for Global Ozone Monitoring
Experiment (GOME), and since applied to GOME-2, SCIAMACHY, OMI,
OMPS and GeoTASO for a range of trace gases <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx17 bib1.bibx82 bib1.bibx65 bib1.bibx13 bib1.bibx99 bib1.bibx33 bib1.bibx34 bib1.bibx67" id="paren.55"/>. These algorithms are also the basis for the TEMPO trace gas
retrieval algorithms. A separate slant column trace gas product at
350 <inline-formula><mml:math id="M163" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M164" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1000 <inline-formula><mml:math id="M165" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> was provided by the GCAS instrument
team at NASA GSFC to the DISCOVER-AQ data archive shortly after the campaign
using the publicly available QDOAS spectral fitting package
(<uri>http://uv-vis.aeronomie.be/software/QDOAS/</uri>, last access: 23 October 2018)
and preliminary calibrated
spectra. This product is not examined in the current study.</p>
      <p id="d1e3048"><xref ref-type="bibr" rid="bib1.bibx67" id="text.56"/> compared preliminary SAO GCAS <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> slant columns
with GeoTASO slant columns within 10 min and 500 m from four coincident
flights during the DISCOVER-AQ Texas campaign (13, 14, 18 and 24 September)
at a resolution of 250 <inline-formula><mml:math id="M167" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M168" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M169" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>. Overall, slant
columns agreed well (<inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.81</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">77</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">320</mml:mn></mml:mrow></mml:math></inline-formula>), with GCAS lower than GeoTASO by
<inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> %. The current GCAS retrieval algorithm used in this study is
similar to the previous algorithm, but the slant column retrieval uses a
separate reference spectrum for each cross-track position and a cross-track
dependent instrument line shape, so that the results no longer require a
cross-track bias correction. The new <inline-formula><mml:math id="M173" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M174" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
products also include improved georegistration.</p>
<sec id="Ch1.S4.SS1">
  <title>Spectral calibration</title>
      <p id="d1e3152">We perform spectral fitting to derive slant columns using
radiometrically calibrated spectra (Level 1B), which are geolocated and
derived from raw (Level 0) data using characterization data collected in the
laboratory before the campaign, as described in detail by
<xref ref-type="bibr" rid="bib1.bibx41" id="text.57"/>. The first-guess wavelength calibration was determined
from spectra collected in the laboratory using mercury–argon, cadmium, neon
and krypton discharge lamps as sources. The pre-flight slit function shape
and width as functions of cross-track position, wavelength and temperature
were also determined using a tunable laser with an integrating sphere. These
laboratory tests indicated the instrument's spectral shift is <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.004</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M176" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> and the change in the slit function's full width at half maximum
(FWHM) is less than 0.0013 <inline-formula><mml:math id="M177" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> within the instrument's thermal
stability range of <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M179" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and nominal operating temperature of
20 <inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Pressure changes within the instrument may also shift the
wavelength calibration through changes in the index of refraction
<xref ref-type="bibr" rid="bib1.bibx42" id="paren.58"/>. These changes are minimized in GCAS and are primarily
due to changes in ambient temperature, as the instrument is backfilled with
gaseous nitrogen and sealed prior to aircraft integration to mitigate
moisture. The impact of wavelength shifts on retrievals is further minimized
through simultaneous fitting of a wavelength shift for each observation as
described in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2.SSS3"/>.</p>
      <p id="d1e3216">We further refine the instrument spectral registration and slit function
calibration using spectra collected during the Texas flights, following our
calibration approach previously applied to GOME, GOME-2, OCO-2, ACAM and
GeoTASO <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx12 bib1.bibx52 bib1.bibx67 bib1.bibx90 bib1.bibx91" id="paren.59"/>.
As a first step in the spectral fitting, we simultaneously derive a
wavelength dispersion and slit function shape by fitting a reference spectrum
to a high-spectral-resolution solar atlas <xref ref-type="bibr" rid="bib1.bibx15" id="paren.60"/>. This is similar
to the approach employed in our satellite retrievals, but, as the airborne
nadir reference spectrum contains atmospheric features (which are not present
in a satellite-observed exo-atmospheric reference), we also simultaneously
fit preliminary amounts of the atmospheric molecular absorbers listed in
Table 3 and the Ring effect<?pagebreak page5947?> (rotational Raman scattering) to account for
these spectral features <xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx67" id="paren.61"/>.</p>
      <p id="d1e3228">We determine a separate wavelength dispersion and slit function shape for
each of the 21 cross-track positions. The wavelength dispersion is determined
by fitting the coefficients in a fifth-order (<inline-formula><mml:math id="M181" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) or seventh-order
(<inline-formula><mml:math id="M182" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) polynomial that represents the wavelength as a function of
detector pixel. For <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, we model the slit function using an
asymmetric super-Gaussian <xref ref-type="bibr" rid="bib1.bibx4" id="paren.62"/>. For <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, we fit
parameters describing the shape and width of an asymmetric Gaussian
<xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx67" id="paren.63"/>. While the super-Gaussian works well for
<inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, it results in a very small increase (<inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> %) in
fitting residuals for <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> over an asymmetric Gaussian, possibly
due to the presence of a double shoulder to one side of the slit function
shape, as measured in the laboratory at wavelengths less than 380 nm
<xref ref-type="bibr" rid="bib1.bibx41" id="paren.64"/>.</p>
      <p id="d1e3323">The retrieved slit function in the <inline-formula><mml:math id="M188" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fitting window is nearly
symmetric and very similar in width to the FWHM <inline-formula><mml:math id="M189" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.58 <inline-formula><mml:math id="M190" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx41" id="paren.65"/> measured in the laboratory. Using in-flight data, the
retrieved FWHM is 0.57 <inline-formula><mml:math id="M191" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> at the nadir center position, expanding to
0.58 <inline-formula><mml:math id="M192" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> at the edges of the swath. The retrieved slit width in the
<inline-formula><mml:math id="M193" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fitting window changes in a similar way but is larger at the
edges (0.57 <inline-formula><mml:math id="M194" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> at swath center, growing to 0.60 <inline-formula><mml:math id="M195" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> at the
leftmost cross-track position (no. 1) and to 0.63 <inline-formula><mml:math id="M196" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> at the rightmost
cross-track position (no. 21)). We estimate the uncertainty in the slit width is
<inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M198" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>, primarily due to temperature fluctuations during
flight. In-flight data show the center detector pixel-to-wavelength
registration for both the <inline-formula><mml:math id="M199" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fitting windows
varies nearly linearly as a function of swath cross-track position across the
left-hand side of the swath, varying by <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M202" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> between cross-track
positions 1 and 11, but remains approximately constant from positions 11 to
21. The retrieved wavelength calibration is stable to <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.002</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M204" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>
after the instrument has thermally stabilized during flight.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Slant column retrieval</title>
<sec id="Ch1.S4.SS2.SSS1">
  <title>Spectral fitting</title>
      <p id="d1e3492">We determine <inline-formula><mml:math id="M205" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> slant columns using
least-squares minimization to directly fit a modeled radiance spectrum
<inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">b</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to our observed radiance spectrum. The modeled spectrum is a
function of pre-determined model parameters <inline-formula><mml:math id="M208" display="inline"><mml:mi mathvariant="bold">b</mml:mi></mml:math></inline-formula> and the retrieved state
vector <inline-formula><mml:math id="M209" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>. The modeled spectrum is represented by

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M210" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mfenced open="(" close=")"><mml:mrow><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:msub><mml:mi>I</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mi mathvariant="normal">u</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">u</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>i</mml:mi></mml:munder><mml:msub><mml:mi>b</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E1"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>j</mml:mi></mml:munder><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">λ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:mfenced><mml:mi>j</mml:mi></mml:msup><mml:msubsup><mml:mi>x</mml:mi><mml:mi>j</mml:mi><mml:mi mathvariant="normal">SC</mml:mi></mml:msubsup><mml:mo>+</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>k</mml:mi></mml:munder><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">λ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:msup><mml:mo>)</mml:mo><mml:mi>k</mml:mi></mml:msup><mml:msubsup><mml:mi>x</mml:mi><mml:mi>k</mml:mi><mml:mi mathvariant="normal">BL</mml:mi></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              In this equation, <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is a reference spectrum determined from clean nadir
observations, scaled by a retrieved intensity parameter <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (which
represents reflectivity factors such as surface albedo or clouds). The
derivation of the reference is discussed in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2.SSS2"/>. The
term <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mi mathvariant="normal">u</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> describes a correction for spectral undersampling
<xref ref-type="bibr" rid="bib1.bibx18" id="paren.66"/>, while <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mi mathvariant="normal">r</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> represents the effects of rotational
Raman scattering <xref ref-type="bibr" rid="bib1.bibx20" id="paren.67"/>. The retrieved differential slant columns
are represented by <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. These differential slant columns are the
differences between the slant columns in the nadir observation of interest
and the slant columns in the reference spectrum. Their absorption cross
sections, as listed in Table 3, convolved with the instrument line shape and
corrected for the “<inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> effect” <xref ref-type="bibr" rid="bib1.bibx1" id="paren.68"/>, are included as
<inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. In addition, the retrieval also determines scaling (of order
<inline-formula><mml:math id="M218" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>) and baseline (of order <inline-formula><mml:math id="M219" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>) wavelength-dependent polynomial coefficients
(<inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:msup><mml:mi>x</mml:mi><mml:mi mathvariant="normal">SC</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:msup><mml:mi>x</mml:mi><mml:mi mathvariant="normal">BL</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) that represent low-frequency wavelength-dependent
effects from surface reflectivity, molecular scattering, aerosols and
instrument artifacts.</p>
</sec>
<sec id="Ch1.S4.SS2.SSS2">
  <title>Reference spectrum</title>
      <p id="d1e3876">Each trace gas retrieval uses a reference spectrum determined from nadir
observations over a clean area. We determine a mean reference spectrum for
each of the 21 cross-track positions by averaging 40 spectra at
250 <inline-formula><mml:math id="M222" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M223" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M224" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> resolution for each cross-track position
from a cloud-free and clean area over the Gulf of Mexico during the 6
September afternoon flight. This location and date were chosen after CMAQ
simulations and preliminary retrievals of <inline-formula><mml:math id="M225" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M226" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
predicted relatively low columns of those trace gases. In addition, we found
that the use of a reference collected before the instrument was thermally
stable (within the first <inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> min of a flight) resulted in
cross-track biases in the <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> retrieval. As observations over the
relatively clean Gulf are often collected in the period soon after takeoff,
this constraint limited the availability of a suitable reference to a
reference spectrum taken late in the flight, close to landing, and with a
relatively high solar zenith angle (58<inline-formula><mml:math id="M229" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>).</p>
      <p id="d1e3957">We use a single reference spectrum at each cross-track position for the
entire campaign, instead of a daily or higher-frequency reference, to ensure
that all days during the campaign have the same background correction applied
for the reference spectrum. Due to the use of a nadir reference, the
retrieved differential slant columns must be corrected by the reference
background column derived from the model to produce an effective tropospheric
column (discussed in further detail in Sect. <xref ref-type="sec" rid="Ch1.S4.SS3"/>). We
find that the use of a single reference for the campaign removes day-to-day
relative background biases in the GCAS column that can result from
uncertainties in daily modeled columns and improves the daily consistency of
background <inline-formula><mml:math id="M230" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> in the in situ P-3B <inline-formula><mml:math id="M231" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> comparison
discussed later in Sect. <xref ref-type="sec" rid="Ch1.S6.SS1"/>. The use of a single versus
daily reference spectrum has little effect on the <inline-formula><mml:math id="M232" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> validation.</p><?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page5948?><sec id="Ch1.S4.SS2.SSS3">
  <?xmltex \opttitle{{$\protect\chem{NO_{{2}}}$} and {$\protect\chem{CH_{{2}}O}$} fitting}?><title><inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M234" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> fitting</title>
      <p id="d1e4032">The <inline-formula><mml:math id="M235" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M236" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> slant column density retrievals use the
fitting parameters summarized in Table 3. <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is fit at wavelengths
420–465 <inline-formula><mml:math id="M238" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> with an <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> absorption cross section at
294 <inline-formula><mml:math id="M240" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula>. The <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval also simultaneously fits
<inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at two temperatures, as well as <inline-formula><mml:math id="M243" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> vapor and
<inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which all have spectral absorption features in the
<inline-formula><mml:math id="M245" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> wavelength fitting window. The <inline-formula><mml:math id="M246" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> retrieval is
performed at 328.5–356.5 <inline-formula><mml:math id="M247" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> and simultaneously fits <inline-formula><mml:math id="M248" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M250" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">BrO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Both retrievals also fit the
undersampling correction, Ring spectrum, a fifth-order scaling polynomial and
a fourth-order baseline polynomial. Each retrieval also determines a wavelength
shift that represents the relative difference in the detector pixel to
wavelength registration between the radiance and reference spectra.</p>
</sec>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Conversion to vertical column</title>
      <p id="d1e4236">For air quality applications, we are interested in the vertical column
density, <inline-formula><mml:math id="M252" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula>, of the trace gas (<inline-formula><mml:math id="M253" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) in the
troposphere. The vertical column density can be derived from the slant column
density, <inline-formula><mml:math id="M255" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>, using an air mass factor, <inline-formula><mml:math id="M256" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula>, which describes the mean light
path through the atmosphere, by

                <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M257" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>V</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>S</mml:mi><mml:mi>A</mml:mi></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          In practice, the retrieval algorithm determines a differential slant column
<inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula>, which is the difference between the slant column <inline-formula><mml:math id="M259" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> of the
absorber in the spectrum of interest and the slant column <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">R</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the
reference spectrum. Each of these slant columns is the sum of the slant
column of absorber in the light path above (<inline-formula><mml:math id="M261" display="inline"><mml:mo lspace="0mm">↑</mml:mo></mml:math></inline-formula>) and below
(<inline-formula><mml:math id="M262" display="inline"><mml:mo lspace="0mm">↓</mml:mo></mml:math></inline-formula>) the aircraft, so that
            <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M263" display="block"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi>S</mml:mi><mml:mo>↓</mml:mo></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi>S</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi>S</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>S</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          In terms of the air mass factor and vertical column, the vertical column
below the aircraft can then be expressed as
            <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M264" display="block"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↓</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi><mml:mo>-</mml:mo><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:msup><mml:mi>A</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:msubsup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup><mml:msubsup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup></mml:mrow><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mo>↓</mml:mo></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the vertical columns <inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> are typically determined from a model. Because the
flight altitude of 9 <inline-formula><mml:math id="M268" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> is well above the majority of tropospheric
<inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, we refer to <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↓</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
as the tropospheric and stratospheric trace gas columns. <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> above
the aircraft is dominated by stratospheric <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, varies primarily
by time of day and ranges within <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.3</mml:mn></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.8</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> in the model is more variable, with
the early part of the campaign (4 to 18 September) seeing levels of
<inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mn mathvariant="normal">25</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and the latter
part seeing levels of <inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. For our chosen reference location, the modeled
vertical columns below the aircraft are
<inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for
<inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. The modeled vertical columns
above the aircraft at the reference location are
<inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for
<inline-formula><mml:math id="M293" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
<sec id="Ch1.S4.SS3.SSS1">
  <title>Air mass factor calculation</title>
      <p id="d1e4960">We calculate the air mass factors on a scene-by-scene basis using the
formulation of <xref ref-type="bibr" rid="bib1.bibx69" id="text.69"/> and <xref ref-type="bibr" rid="bib1.bibx58" id="text.70"/> with the VLIDORT
radiative transfer model <xref ref-type="bibr" rid="bib1.bibx88 bib1.bibx87" id="paren.71"/>. In this approach, the
radiative transfer model provides scattering weights <inline-formula><mml:math id="M297" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> as a function of
altitude <inline-formula><mml:math id="M298" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>. The scattering weights describe the sensitivity of the
measurement to the different altitude layers and are a function of the
viewing geometry, ozone profile, aerosol and molecular scattering, and
surface reflectance. These can be used with shape factor <inline-formula><mml:math id="M299" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula>, which is the
normalized partial column <inline-formula><mml:math id="M300" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> of the trace gas at each altitude layer:
              <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M301" display="block"><mml:mrow><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>n</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mo>∫</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mi>n</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            The AMF is defined as
              <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M302" display="block"><mml:mrow><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∫</mml:mo><mml:mi>z</mml:mi></mml:munder><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e5085">The air mass factor below the aircraft <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mo>↓</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is calculated from the
surface <inline-formula><mml:math id="M304" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to the aircraft altitude <inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">ac</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> as

                  <disp-formula id="Ch1.E7" content-type="numbered"><mml:math id="M306" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi>A</mml:mi><mml:mo>↓</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">ac</mml:mi></mml:msub></mml:mrow></mml:munderover><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            while the air mass factor above the aircraft <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:msup><mml:mi>A</mml:mi><mml:mo>↑</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is determined from
the aircraft altitude to the top of the atmosphere at <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">TOA</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, with

                  <disp-formula id="Ch1.E8" content-type="numbered"><mml:math id="M309" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi>A</mml:mi><mml:mo>↑</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">ac</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">TOA</mml:mi></mml:msub></mml:mrow></mml:munderover><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="Ch1.S4.SS3.SSS2">
  <title>Radiative transfer calculations</title>
      <p id="d1e5253">We use the radiative transfer algorithm to determine scattering weights in
56 vertical layers. These include the 45 CMAQ layers up to <inline-formula><mml:math id="M310" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">19</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M311" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> and 11 additional layers to 0.3 <inline-formula><mml:math id="M312" display="inline"><mml:mi mathvariant="normal">hPa</mml:mi></mml:math></inline-formula>. We use the MODIS
BRDF (bidirectional reflectance distribution functions) gap-filled MCD43GF
V005 Band 3 product <xref ref-type="bibr" rid="bib1.bibx80 bib1.bibx92" id="paren.72"/> to represent surface
reflectance in the VLIDORT model. This BRDF product is provided at a spatial
resolution of 30 <inline-formula><mml:math id="M313" display="inline"><mml:mi mathvariant="normal">arcsec</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">0.80</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M315" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> in longitude by
0.92 <inline-formula><mml:math id="M316" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> in latitude over Houston) every 8 days, based on 16 days of
MODIS measurements. The MODIS Band 3 product is derived at 470 nm. While
this is close to the <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fitting window, there currently exists<?pagebreak page5949?> no
BRDF climatology at shorter wavelengths. We determine effective BRDFs at
442 <inline-formula><mml:math id="M318" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M319" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and 342 <inline-formula><mml:math id="M320" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M321" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) by scaling
the BRDF functions by the ratio of the <inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">0.5</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">0.5</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> monthly
OMI Earth Surface Reflectance Climatology product (OMLER)
<xref ref-type="bibr" rid="bib1.bibx39" id="paren.73"/> at either 442 or 342 <inline-formula><mml:math id="M323" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> to its value at
470 <inline-formula><mml:math id="M324" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>. These results are typically within 2 %–3 % of the
results derived using a black-sky/white-sky approach to estimate surface
reflectance <xref ref-type="bibr" rid="bib1.bibx61" id="paren.74"/>.</p>
      <p id="d1e5405">Figure <xref ref-type="fig" rid="Ch1.F2"/> shows profiles for (1) a sample polluted
observation at the Moody Tower site in downtown Houston and (2) the reference
spectrum. For the AMF calculation, the shape factors are derived from the
model profiles shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/>a and c and then
applied to the corresponding scattering weights. Differences in the
scattering weights of the reference and Moody Tower observations at higher
altitudes are mainly driven by differences in the solar zenith angles. The
smaller <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> scattering weights near the surface relative to those
of <inline-formula><mml:math id="M326" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> indicate the relatively lower sensitivity of the
observations to near-surface <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. This is due primarily to the
wavelength dependency of the AMF, as stronger Rayleigh scattering and ozone
absorption at shorter wavelengths decreases the measurement sensitivity to
lower altitudes. The AMF is calculated scene by scene for each nadir
observation. The reference spectrum AMFs at the swath center are
<inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:msubsup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.65</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:msubsup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.92</mml:mn></mml:mrow></mml:math></inline-formula> for
<inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:msubsup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.03</mml:mn></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:msubsup><mml:mi>A</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.49</mml:mn></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M333" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p id="d1e5544">Sample mixing ratio (mxr) and scattering weight (<inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>) profiles
used in the GCAS AMF calculations. The reference spectrum profiles are taken
from the 6 September afternoon flight over the Gulf of Mexico at an average
location of 29.126<inline-formula><mml:math id="M335" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 94.818<inline-formula><mml:math id="M336" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W at 17:04 LT (local
time: UTC time <inline-formula><mml:math id="M337" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> 5 h) with SZA <inline-formula><mml:math id="M338" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 58.0<inline-formula><mml:math id="M339" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>and
VZA <inline-formula><mml:math id="M340" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10.5<inline-formula><mml:math id="M341" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. The profiles at the Moody Tower site in downtown
Houston are from the 25 September morning flight at 10:56 LT with
SZA <inline-formula><mml:math id="M342" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 45.0<inline-formula><mml:math id="M343" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>and VZA <inline-formula><mml:math id="M344" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10.7<inline-formula><mml:math id="M345" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. The estimated surface
reflectivities at 442 <inline-formula><mml:math id="M346" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and 342 <inline-formula><mml:math id="M348" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>
(<inline-formula><mml:math id="M349" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) are 0.04 and 0.05 at the reference location and are both
0.07 at Moody Tower. The dashed black line indicates the aircraft flight
altitude.</p></caption>
            <?xmltex \igopts{width=170.716535pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f02.png"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Cloud flagging</title>
      <p id="d1e5703">Only cloud-free measurements are used in this study, and the radiative
transfer calculations assume cloud-free conditions. Unlike the case of
satellite observations with footprints on the order of tens of square
kilometers, GCAS observations are of sufficiently high spatial resolution
that cloudy pixels can be discarded without loss of a significant amount of
data. We flag as cloudy any pixel that has a mean radiance in the
<inline-formula><mml:math id="M350" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fitting window over a threshold of <inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M352" display="inline"><mml:mrow><mml:mi mathvariant="normal">photons</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">nm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">sr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, which is typically only
exceeded in the case of a bright cloud. The Ring scattering parameter
retrieved simultaneously with <inline-formula><mml:math id="M353" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and a color index (the radiance
ratio at wavelengths 320 to 440 nm) are also used to flag less bright pixels
where clouds likely occur <xref ref-type="bibr" rid="bib1.bibx98" id="paren.75"/>.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <title>Trace gas uncertainties</title>
      <p id="d1e5796">Uncertainties in the vertical column density result from uncertainties in (1) the slant column fitting; (2) the air mass factor calculation; and (3) the
modeled reference and stratospheric columns needed for determining the
vertical column below the aircraft using Eq. (<xref ref-type="disp-formula" rid="Ch1.E4"/>).</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S4.SS5.SSS1">
  <title>Slant column uncertainties</title>
      <?pagebreak page5950?><p id="d1e5807">The slant column fitting uncertainty on a single observation is dominated by
the random noise in the spectrum. Over a typical day, the mean fitting
uncertainty in an <inline-formula><mml:math id="M354" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> differential slant column at
250 <inline-formula><mml:math id="M355" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M356" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M357" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> resolution is <inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, including all solar zenith angles in the morning
and afternoon flights. The typical fitting uncertainty in a <inline-formula><mml:math id="M360" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
differential slant column is <inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M362" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
After AMFs are applied, typical mean vertical column precisions are
<inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M364" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M366" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M367" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M368" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. The
precision requirements of the TEMPO instrument are <inline-formula><mml:math id="M369" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M370" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M371" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M372" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M374" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx107" id="paren.76"/>. (Note that
the signal-to-noise ratio is higher at <inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> wavelengths relative to that
at <inline-formula><mml:math id="M376" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> wavelengths for TEMPO, which is the opposite of GCAS.)
<inline-formula><mml:math id="M377" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> in particular is noisy at the provided GCAS spatial resolution
of 250 <inline-formula><mml:math id="M378" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M379" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M380" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, with enhanced <inline-formula><mml:math id="M381" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
columns often on the order of the retrieval precision. GCAS <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
must be spatially averaged to meet the TEMPO precision requirement and to
improve the detection limit in order to observe polluted columns over
Houston. As a result, later in this paper we present <inline-formula><mml:math id="M383" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> maps at
1 <inline-formula><mml:math id="M384" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> resolution, with an effective precision on the order of
<inline-formula><mml:math id="M385" display="inline"><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M386" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. It should be noted that, even at
precisions of <inline-formula><mml:math id="M387" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M388" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M389" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
columns from satellite instruments like OMI typically must be temporally
averaged to resolve local <inline-formula><mml:math id="M390" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> features <xref ref-type="bibr" rid="bib1.bibx57 bib1.bibx106" id="paren.77"><named-content content-type="pre">e.g.,</named-content></xref>.</p>
      <p id="d1e6307">Additional errors in <inline-formula><mml:math id="M391" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> slant column retrievals can also result
from the use of an <inline-formula><mml:math id="M392" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cross section at a single temperature
<xref ref-type="bibr" rid="bib1.bibx5" id="paren.78"/>. The profile-weighted effective temperature of
<inline-formula><mml:math id="M393" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> during the Houston campaign in polluted observations was
typically within a few degrees of the 294 <inline-formula><mml:math id="M394" display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula> cross-section temperature,
resulting in an expected bias within 1 %–2 % in the tropospheric slant
column. The stratospheric slant column may be biased by <inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> % due
to its colder temperature, but the influence of this uncertainty is minimized
by the use of a nadir reference spectrum, resulting in a possible systematic
bias on the order of <inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (an
uncertainty of 1 %–2 % for polluted pixels). Uncertainties in the
laboratory cross sections introduce additional uncertainties in the slant
columns of 2 % for <inline-formula><mml:math id="M398" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx5" id="paren.79"/> and 5 % for
<inline-formula><mml:math id="M399" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx16" id="paren.80"/>. Uncertainties in the differential slant
columns due to uncertainties in the spectral calibration are <inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M402" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M405" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S4.SS5.SSS2">
  <title>Air mass factor uncertainties</title>
      <p id="d1e6526">The air mass factor uncertainties in cloud-free satellite observations are
typically dominated by uncertainties in the surface albedo, trace gas profile
shape and aerosols <xref ref-type="bibr" rid="bib1.bibx5" id="paren.81"/>. A recent study by <xref ref-type="bibr" rid="bib1.bibx55" id="text.82"/>
found an average AMF structural uncertainty of 42 % in polluted
observations and 31 % in unpolluted regions when different retrieval
groups used different inputs to <inline-formula><mml:math id="M406" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> AMF calculations; the most
significant impacts overall were from differences in surface albedo, cloud
parameters and trace gas profile inputs.</p>
      <p id="d1e6546">MODIS BRDF comparisons with aircraft observations of the surface indicate an
uncertainty in the MODIS BRDF product of 20 % for both accuracy and
precision <xref ref-type="bibr" rid="bib1.bibx76" id="paren.83"/> at GCAS spatial resolutions. We estimate the
impact of those uncertainties from the MODIS surface BRDF on our individual
AMFs to be 10 % for polluted observations and 5 % for clean
observations. <xref ref-type="bibr" rid="bib1.bibx101" id="text.84"/> showed that the use of the Lambertian
approximation in the derivation of the MODIS products may result in surface
reflectance underestimation of 0.008 by MODIS in the green bands. This
surface bias on average could cause the GCAS AMF to be underestimated (and
the resulting trace gas column to be overestimated) by <inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> %.</p>
      <p id="d1e6565">The radiative effects of aerosols are not typically included in operational
satellite retrieval trace gas AMFs, except as an implicit component of the
cloud fraction, and we have not included aerosols in the current study. In
reality, the presence of aerosols can increase or decrease the AMF, with
effects depending on aerosol type and altitude <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx50 bib1.bibx21 bib1.bibx43 bib1.bibx62" id="paren.85"/>. When scattering aerosols are in the
boundary layer, for example, the backscattered light path increases the
radiative sensitivity (an enhancement effect), resulting in an increase in
the AMF. Ignoring these aerosols in the radiative transfer calculation will
cause the retrieved column to be overestimated. When scattering aerosols are
aloft, the radiative sensitivity decreases near the surface (a shielding
effect), resulting in a decrease in the AMF. Absorbing aerosols aloft or at
the altitude of the trace gas can decrease the measurement sensitivity by
reducing the number of photons backscattered to the instrument, thereby
reducing the AMF. Even when aerosols are considered, assumptions about
aerosol optical properties and profiles can cause large uncertainties;
<xref ref-type="bibr" rid="bib1.bibx55" id="text.86"/> found different aerosol corrections used by different
research groups introduced an average uncertainty of 50 % for polluted
satellite observations with high aerosol loading.</p>
      <p id="d1e6574">Aerosol optical depth (AOD) measured by the HSRL lidar on the B-200
<xref ref-type="bibr" rid="bib1.bibx79" id="paren.87"/> showed aerosols varying day to day along the flight
track and with altitude during the DISCOVER-AQ Texas campaign. The beginning
of the campaign saw moderate AOD on the order of 0.2–0.3 (532 <inline-formula><mml:math id="M408" display="inline"><mml:mi mathvariant="normal">nm</mml:mi></mml:math></inline-formula>),
often with a smoke plume at altitudes 2–4 <inline-formula><mml:math id="M409" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> which sometimes merged
with aerosols from lower layers later in the day. Observed AODs rose sharply
on 14 September, with AODs in excess of 0.7 in some areas. Aerosol loading
from 18 September onwards was relatively low (<inline-formula><mml:math id="M410" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.15</mml:mn></mml:mrow></mml:math></inline-formula>) and primarily located
near the surface, with AOD occasionally reaching 0.25 at some points along the
flight track. A full assessment of the effects of aerosols on the AMF is
beyond the scope of this paper and the subject of ongoing work, but our
simulations with typical AOD profiles from the HSRL lidar show a potential
overestimation of the column of 10 %–30 % for individual polluted pixels
when scattering aerosols in the planetary boundary layer (PBL) are ignored and a potential 15 %
underestimation of the column when the smoke layer aloft is ignored. These
results are consistent with <xref ref-type="bibr" rid="bib1.bibx50" id="text.88"/>, whose satellite biases are
typically within <inline-formula><mml:math id="M411" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> % due to the neglect of aerosols at these AODs.</p>
      <?pagebreak page5951?><p id="d1e6619"><xref ref-type="bibr" rid="bib1.bibx67" id="text.89"/> previously compared mean profile shapes from the P-CL
observations and the CMAQ simulations for the eight core ground sites during
DISCOVER-AQ Texas; mean differences were typically within 20 % for
individual sites. Individual total column observations can vary by <inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula> %
<xref ref-type="bibr" rid="bib1.bibx67" id="paren.90"/>, with differences mostly resulting from the small-scale
features of <inline-formula><mml:math id="M413" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes, which are difficult to resolve with model
resolution. Previous comparisons of DISCOVER-AQ Texas CMAQ <inline-formula><mml:math id="M414" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
1 <inline-formula><mml:math id="M415" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> simulations with P-3B DFGAS observations showed agreement between
the model and observations for most days of the campaign
<xref ref-type="bibr" rid="bib1.bibx31" id="paren.91"/>. The average of daily mean biases indicated a low
bias of CMAQ relative to DFGAS of <inline-formula><mml:math id="M416" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.44</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.39</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M417" display="inline"><mml:mi mathvariant="normal">ppbv</mml:mi></mml:math></inline-formula> in the PBL and
<inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.32</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.40</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M419" display="inline"><mml:mi mathvariant="normal">ppbv</mml:mi></mml:math></inline-formula> overall (<inline-formula><mml:math id="M420" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">11.8</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15.7</mml:mn></mml:mrow></mml:math></inline-formula> %) over all days,
excluding 25 September: a unique day characterized by very
large <inline-formula><mml:math id="M421" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> levels of up to 25 <inline-formula><mml:math id="M422" display="inline"><mml:mi mathvariant="normal">ppbv</mml:mi></mml:math></inline-formula> as measured by the DFGAS
instrument on the P-3B in the boundary layer over petrochemical facilities
in Houston and up to 33 <inline-formula><mml:math id="M423" display="inline"><mml:mi mathvariant="normal">ppbv</mml:mi></mml:math></inline-formula> downwind over Galveston Bay and Smith
Point later in the day due to photochemical processing
<xref ref-type="bibr" rid="bib1.bibx31" id="paren.92"/>. From P-3B comparisons discussed later in this paper
(Sect. <xref ref-type="sec" rid="Ch1.S6.SS3"/>), we estimate these profile shape
uncertainties typically result in uncertainties in the AMF of 10 % for
<inline-formula><mml:math id="M424" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and 8 % for <inline-formula><mml:math id="M425" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e6786"><xref ref-type="bibr" rid="bib1.bibx85" id="text.93"/> calculated GCAS <inline-formula><mml:math id="M426" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical columns
independently for our derived slant columns and found a mean tropospheric AMF
over all days of <inline-formula><mml:math id="M427" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.26</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.32</mml:mn></mml:mrow></mml:math></inline-formula>. This compares closely with our mean AMF of
<inline-formula><mml:math id="M428" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.29</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>±</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">0.27</mml:mn></mml:mrow></mml:math></inline-formula>. Their inputs included MODIS BRDF for surface reflectance,
GEOS-Chem modeled stratospheric profiles, and an independently run CMAQ
simulation whose aerosol fields were used to determine aerosol optical depths
for input to the VLIDORT model. The similar AMF from a separate study
suggests a low structural uncertainty in AMF calculations using currently
available ancillary information.</p>
</sec>
<sec id="Ch1.S4.SS5.SSS3">
  <title>Modeled column uncertainties</title>
      <p id="d1e6834">Equation (<xref ref-type="disp-formula" rid="Ch1.E4"/>) requires the modeled vertical column below the
aircraft at the reference spectrum location (<inline-formula><mml:math id="M429" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↓</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) and
the modeled vertical columns above the aircraft at the observation location
(<inline-formula><mml:math id="M430" display="inline"><mml:mrow><mml:msup><mml:mi>V</mml:mi><mml:mo>↑</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) and the reference location (<inline-formula><mml:math id="M431" display="inline"><mml:mrow><mml:msubsup><mml:mi>V</mml:mi><mml:mi mathvariant="normal">R</mml:mi><mml:mo>↑</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>).
Systematic uncertainties in the effective slant columns above the aircraft at
the observation and the reference may cancel out to some degree, but small
uncertainties may still propagate to the final vertical column through the
use of different observation and reference times and locations. We estimate
an uncertainty of 30 % in the <inline-formula><mml:math id="M432" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> stratospheric column, based
on PRATMO comparisons with the Optical Spectrograph and InfraRed Imaging
System (OSIRIS) limb sounder <xref ref-type="bibr" rid="bib1.bibx7" id="paren.94"/>. We estimate reference
location tropospheric vertical column uncertainties of 40 % for
<inline-formula><mml:math id="M433" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and 31 % for <inline-formula><mml:math id="M434" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, based on comparisons of the
CMAQ model columns with the P-3B-inferred columns of the four cleanest
spirals during the campaign at the coastal sites Galveston and Smith Point.
An additional uncertainty is added by uncertainty in the reference AMFs, as
discussed in the previous section.</p>
</sec>
<sec id="Ch1.S4.SS5.SSS4">
  <title>Total uncertainties</title>
      <p id="d1e6922">We estimate total uncertainties by error propagation through Eq. (<xref ref-type="disp-formula" rid="Ch1.E4"/>). Total uncertainties in cloud-free tropospheric
<inline-formula><mml:math id="M435" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns at 250 <inline-formula><mml:math id="M436" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M437" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M438" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> resolution
range from 30 % to <inline-formula><mml:math id="M439" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula> % for clean pixels (<inline-formula><mml:math id="M440" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), 20 % to 50 % for moderately polluted pixels
(0.5–<inline-formula><mml:math id="M442" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and 18 % to 30 % for more
heavily polluted pixels (<inline-formula><mml:math id="M444" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M445" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Total
uncertainties in <inline-formula><mml:math id="M446" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns at this spatial resolution vary from
30 % to <inline-formula><mml:math id="M447" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula> % for clean pixels (<inline-formula><mml:math id="M448" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M449" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), 20 % to 50 % for moderately polluted pixels
(1–<inline-formula><mml:math id="M450" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M451" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and 18 % to 40 % for very
polluted pixels (<inline-formula><mml:math id="M452" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M453" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e7197">Tropospheric <inline-formula><mml:math id="M454" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M455" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> vertical columns
measured by GCAS over Houston on 24 September 2013. <inline-formula><mml:math id="M456" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
observations are at <inline-formula><mml:math id="M457" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">250</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M458" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M459" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M460" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>
resolution, and <inline-formula><mml:math id="M461" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns are at <inline-formula><mml:math id="M462" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.01</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M463" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M464" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) resolution. Times are local time.
Black crosses indicate ground sites.</p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f03.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e7329">Same as Fig. <xref ref-type="fig" rid="Ch1.F3"/> but for 25 September
2013.</p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f04.png"/>

          </fig>

</sec>
</sec>
</sec>
<sec id="Ch1.S5">
  <title>Vertical column results</title>
      <p id="d1e7349">Retrieved GCAS columns in the Houston area during the campaign show enhanced
<inline-formula><mml:math id="M465" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> amounts over central Houston (close to Moody Tower), in the
vicinity of the Houston Ship Channel industrial area (Pandora sites
Channelview, Deer Park and La Porte) and sometimes along the more suburban
flight track to the west of and over Manvel Croix, which is the case for
morning overpasses on 6 and 13 September <xref ref-type="bibr" rid="bib1.bibx67" id="paren.95"/>. Individual
<inline-formula><mml:math id="M466" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes can also often be observed from single industrial sites
and stacks. Emissions estimates using GCAS and CMAQ indicate the highest
source regions for <inline-formula><mml:math id="M467" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the Houston metropolitan area
(145 t day<inline-formula><mml:math id="M468" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>),
where mobile sources dominate; the Houston Ship Channel region
(54 t day<inline-formula><mml:math id="M469" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), where many petrochemical plants are concentrated; and, to a lesser
extent, the Texas City area (17 t day<inline-formula><mml:math id="M470" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), which is home to petroleum refining
and petrochemical processing facilities <xref ref-type="bibr" rid="bib1.bibx85" id="paren.96"/>.</p>
      <p id="d1e7428">Figures <xref ref-type="fig" rid="Ch1.F3"/> and <xref ref-type="fig" rid="Ch1.F4"/>
show examples of retrieved <inline-formula><mml:math id="M471" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M472" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> tropospheric
vertical columns for two consecutive days during the campaign and illustrate
both the day-to-day and hourly variabilities observed in <inline-formula><mml:math id="M473" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M474" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns. In general, the largest <inline-formula><mml:math id="M475" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns are
seen in morning flights during all days of the campaign, with the peak
columns varying with overpass time and meteorological conditions. The day of 24 September is typical of columns measured during the campaign in terms of
magnitude. The 25 September flights show the largest pollution episode of the
campaign.</p>
      <p id="d1e7495">Formaldehyde observations are noisier, but enhanced <inline-formula><mml:math id="M476" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns
are clearly observable on some days when data are spatially averaged. In
particular, 4 and 25 September show the largest <inline-formula><mml:math id="M477" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
enhancements, with peak values on the order of <inline-formula><mml:math id="M478" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M479" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> at 1 <inline-formula><mml:math id="M480" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> resolution. Figure <xref ref-type="fig" rid="Ch1.F4"/> shows the significant enhancement in
<inline-formula><mml:math id="M481" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> near the Houston Ship Channel industrial area on 25 September.
Several other days exhibit enhanced background over land, with the largest
values of <inline-formula><mml:math id="M482" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns on these days to the north of Houston over
the Conroe region, potentially from biogenic sources as well as transport of
<inline-formula><mml:math id="M483" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and its precursors. These days with large background
<inline-formula><mml:math id="M484" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> highlight the importance of using the clean reference over the
water, where background <inline-formula><mml:math id="M485" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> is typically lower than over land.</p>
      <p id="d1e7635">The month of September 2013 was relatively dry over Houston, and B-200
flights typically occurred on dry days with little cloud cover. <xref ref-type="bibr" rid="bib1.bibx49" id="text.97"/> and
<xref ref-type="bibr" rid="bib1.bibx56" id="text.98"/> describe the overall meteorological conditions present
during the campaign as well as detailed meteorological conditions on certain
days. In the early part of September, the area saw little influence from
strong synoptic weather systems, with winds mostly light and northeasterly in
the early morning, shifting clockwise to southeasterly in the afternoons and
resulting in the transport of clean marine air over Houston. The days of 11–14 September were characterized by winds from the northeast, parallel to the
coastline. A cold front passed over Houston with northerly transport on<?pagebreak page5953?> 24 September, while 26 September saw stagnant conditions overnight, followed by
a sea breeze.</p>
      <p id="d1e7645">The 25 September pollution episode has been previously examined in several
model and in situ measurement studies <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx49 bib1.bibx84 bib1.bibx31 bib1.bibx59 bib1.bibx70" id="paren.99"/>. This day saw a light morning land
breeze which removed pollutants from the Ship Channel to Galveston Bay. A
later bay breeze then brought pollutants from the bay back to land. In the
mid-morning, the prevailing winds were northwesterly over most of the city,
with northeasterly winds observed at the Houston Ship Channel. When combined
with the bay breeze, these winds set up a convergence zone, trapping
pollutants from the Ship Channel region. In combination with a suspected
emissions event <xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx85" id="paren.100"/>, these meteorological
conditions produced very high levels of ozone, <inline-formula><mml:math id="M486" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M487" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
and related species. <inline-formula><mml:math id="M488" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns on this day are largest in the
morning flight, while <inline-formula><mml:math id="M489" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns are largest in the afternoon.
GCAS is likely measuring both directly emitted <inline-formula><mml:math id="M490" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and secondary
<inline-formula><mml:math id="M491" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> produced from other precursors.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e7731">GCAS tropospheric <inline-formula><mml:math id="M492" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns measured near DISCOVER-AQ
ground sites in the area of downtown Houston on 25 September 2013. P-3B
flight tracks are shown in white. Pandora direct-sun <inline-formula><mml:math id="M493" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
tropospheric columns (total column <inline-formula><mml:math id="M494" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> minus modeled <inline-formula><mml:math id="M495" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
above the aircraft) are shown in filled circles. Black lines represent the
line of sight of each Pandora intersecting the bottom 2 <inline-formula><mml:math id="M496" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> of the
atmosphere. The largest <inline-formula><mml:math id="M497" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column observed by GCAS on this day was
<inline-formula><mml:math id="M498" display="inline"><mml:mrow><mml:mn mathvariant="normal">16</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M499" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The <inline-formula><mml:math id="M500" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> precision
at this resolution is <inline-formula><mml:math id="M501" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M502" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
Periodic cross-track gaps in the data are due to write-to-disk intervals of
the instrument. During these periods, the instrument does not acquire data,
thus producing small gaps in coverage.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f05.jpg"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e7882">GCAS tropospheric <inline-formula><mml:math id="M503" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns measured near DISCOVER-AQ
ground sites in the area of downtown Houston on 25 September 2013. P-3B
flight tracks are shown in white. <inline-formula><mml:math id="M504" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns are spatially
averaged on a <inline-formula><mml:math id="M505" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.01</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> grid (<inline-formula><mml:math id="M506" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M507" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>). The <inline-formula><mml:math id="M508" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> precision at this resolution is <inline-formula><mml:math id="M509" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">7</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M510" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f06.jpg"/>

      </fig>

</sec>
<sec id="Ch1.S6">
  <title>Comparisons with coincident measurements</title>
      <p id="d1e8012">In this section, we compare GCAS observations from all days with coincident
observations from Pandoras and the P-3B aircraft. Figures <xref ref-type="fig" rid="Ch1.F5"/> and <xref ref-type="fig" rid="Ch1.F6"/> show
enlarged views of <inline-formula><mml:math id="M511" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M512" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> observations over the
downtown and Ship Channel regions of Houston on 25 September, along with
coincident Pandora ground site observations and the P-3B flight track nearest
in time. These figures illustrate the typical coverage of P-3B spirals
relative to GCAS swaths, as well as the air mass measured in the bottom 2 <inline-formula><mml:math id="M513" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> of the atmosphere by Pandora DS ground-based instruments.</p>
<sec id="Ch1.S6.SS1">
  <title>P-3B airborne in situ measurements</title>
      <p id="d1e8055">We compare the retrieved GCAS <inline-formula><mml:math id="M514" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M515" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns with
columns derived from in situ observations on the P-3B aircraft. The P-3B
profiles are converted into column amounts below the top flight altitude
(usually 3.5–5 km) using mixing ratios and pressure/temperature profiles
measured on board the P-3B aircraft. Comparisons between GCAS and P-3B
columns are shown in Fig. <xref ref-type="fig" rid="Ch1.F7"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e8086">Columns derived from in situ measurements of
<bold>(a)</bold> <inline-formula><mml:math id="M516" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from the chemiluminescence instrument and
<bold>(b)</bold> <inline-formula><mml:math id="M517" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> from the DFGAS instrument on the P-3B aircraft
compared with vertical columns measured by the GCAS instrument, over 9
days during the DISCOVER-AQ Texas campaign. Each GCAS vertical column is the
mean of all retrieved cloud-free GCAS columns below the aircraft within
5 <inline-formula><mml:math id="M518" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> and 1 <inline-formula><mml:math id="M519" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula> of its coincident P-3B spiral center. GCAS air
mass factors are determined using modeled CMAQ profiles. The solid line
represents the 1 : 1 ratio. The dotted line represents the reduced major
axis linear regression. Error bars represent the uncertainty in the GCAS mean
column due to retrieval noise from the observations used to calculate a mean
column (typically several hundred at 250 <inline-formula><mml:math id="M520" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M521" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M522" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>
resolution); in the case of <inline-formula><mml:math id="M523" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, this uncertainty is generally
negligible due to low relative error. Column precisions for P-3B observations
are approximately <inline-formula><mml:math id="M524" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M525" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M526" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and <inline-formula><mml:math id="M527" display="inline"><mml:mrow><mml:mn mathvariant="normal">6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M528" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M529" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>). Uncertainties from spatial variability and measurement
accuracy are discussed in the text.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f07.png"/>

        </fig>

<sec id="Ch1.S6.SS1.SSS1">
  <title>P-3B and GCAS column preparation</title>
      <p id="d1e8266">Each P-3B column is calculated by integrating the <inline-formula><mml:math id="M530" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or
<inline-formula><mml:math id="M531" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> partial columns derived from observed mixing ratios over the
altitude of the spiral. The lowest altitude of each P-3B spiral varies by
location. At Deer Park, Galveston and West Houston, the mean minimum spiral
altitude is <inline-formula><mml:math id="M532" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula>–40 <inline-formula><mml:math id="M533" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, while Conroe and Smith Point spirals
typically go as low as <inline-formula><mml:math id="M534" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">130</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M535" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>. At Channelview, Manvel Croix and
Moody Tower, the lowest spiral altitude is typically <inline-formula><mml:math id="M536" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">300</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M537" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>. To
determine the <inline-formula><mml:math id="M538" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile below the lowest P-3B altitude, we
estimate the P-3B mixing ratio below the aircraft following
<xref ref-type="bibr" rid="bib1.bibx44" id="text.101"/>, by extrapolating the mixing ratio at the lowest aircraft
altitude to the surface using the vertical gradient from the CMAQ model at
altitudes below the spiral. A large source of error from these extrapolations
is the inhomogeneity of the trace gas field, which is particularly strong for
<inline-formula><mml:math id="M539" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (see Fig. <xref ref-type="fig" rid="Ch1.F5"/> for example), as the
lowest mixing ratio could be measured in or out of an area of high
<inline-formula><mml:math id="M540" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and is then extended to the ground. <xref ref-type="bibr" rid="bib1.bibx44" id="text.102"/>
estimated errors in the DISCOVER-AQ Maryland P-3B <inline-formula><mml:math id="M541" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns of
generally less than 20 % from extrapolation of the <inline-formula><mml:math id="M542" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile
below <inline-formula><mml:math id="M543" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">300</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M544" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, assuming a factor-of-2 error in the
extrapolation. <inline-formula><mml:math id="M545" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> DFGAS mixing ratios below the spiral are
extrapolated to the ground from the lowest mixing ratio in the bottom 100 <inline-formula><mml:math id="M546" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> of the spiral, as described by <xref ref-type="bibr" rid="bib1.bibx32" id="text.103"/>. As <inline-formula><mml:math id="M547" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
gradients near the surface tend to be smaller than those of <inline-formula><mml:math id="M548" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
the extrapolation error is also likely less significant. P-3B <inline-formula><mml:math id="M549" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
columns calculated with an extrapolated model gradient and a direct
extrapolation vary by about 5 %.</p>
      <p id="d1e8488">The GCAS column for the P-3B comparison is calculated by averaging all GCAS
columns within 1 <inline-formula><mml:math id="M550" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula> and 5 <inline-formula><mml:math id="M551" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> of a spiral center. We exclude
spirals where there are fewer than 30 GCAS observations within the coincident
area; most spirals typically include hundreds of GCAS pixels. The modeled
<inline-formula><mml:math id="M552" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column above the top P-3B spiral altitude is subtracted from
the retrieved GCAS tropospheric <inline-formula><mml:math id="M553" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column (<inline-formula><mml:math id="M554" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M555" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> on average). Comparisons of CMAQ and P-3B
<inline-formula><mml:math id="M556" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles in the free troposphere (3–5 km) suggest a mean
absolute error of 70 % in the free troposphere (CMAQ is 10 % higher
than the P-3B on average). If we assume similar discrepancies above the
highest P-3B altitude, this may lead to an uncertainty of <inline-formula><mml:math id="M557" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M558" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in the GCAS column from the
removal of the column above the P-3B.</p>
      <p id="d1e8607">Free-tropospheric <inline-formula><mml:math id="M559" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> in the model is much larger than that
observed by the in situ instrument during several early flights during the
4–14 September period, possibly due to the transport of too much boundary
layer air in the model <xref ref-type="bibr" rid="bib1.bibx31" id="paren.104"/>. The mean absolute error from
CMAQ versus P-3B between 3 and 5 km is 40 %, with much larger biases of
<inline-formula><mml:math id="M560" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula> % on certain days. We find its removal introduces daily
background biases that reduce the overall correlation between P-3B and GCAS
observations; as a result, we do not remove the modeled <inline-formula><mml:math id="M561" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> above
the spiral from the GCAS results in these comparisons. This results in an
uncertainty on the order of 1–<inline-formula><mml:math id="M562" display="inline"><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M563" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
depending on the flight.</p>
</sec>
<sec id="Ch1.S6.SS1.SSS2">
  <?xmltex \opttitle{{$\protect\chem{NO_{{2}}}$}}?><title>
            <inline-formula><mml:math id="M564" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e8700">The overall correlation between the P-3B P-CL and GCAS <inline-formula><mml:math id="M565" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
measurements is very good (<inline-formula><mml:math id="M566" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.89</mml:mn></mml:mrow></mml:math></inline-formula>). The two instruments also agree well
in magnitude, with GCAS slightly lower than the P-3B at larger <inline-formula><mml:math id="M567" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
columns by <inline-formula><mml:math id="M568" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> %. At<?pagebreak page5954?> background levels, GCAS overestimates the P-3B
columns by <inline-formula><mml:math id="M569" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1.6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M570" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. This
background offset is most likely due to a combination of uncertainties
introduced by the GCAS stratospheric correction and the modeled tropospheric
background column in the reference spectrum in Eq. (<xref ref-type="disp-formula" rid="Ch1.E4"/>),
with a possible contribution from the uncertainty in the column below the
minimum P-3B spiral altitude.</p>
</sec>
<?pagebreak page5955?><sec id="Ch1.S6.SS1.SSS3">
  <?xmltex \opttitle{{$\protect\chem{CH_{{2}}O}$}}?><title>
            <inline-formula><mml:math id="M571" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
          </title>
      <p id="d1e8808">The agreement between the P-3B DFGAS and GCAS <inline-formula><mml:math id="M572" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns is also
reasonably good (<inline-formula><mml:math id="M573" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.54</mml:mn></mml:mrow></mml:math></inline-formula>), with GCAS on average 8 % larger than
DFGAS. There appears to be little background offset bias influence from the
reference spectrum, although the GCAS columns are likely overestimated by
some small amount as the <inline-formula><mml:math id="M574" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> above the P-3B has not been removed,
as discussed previously. Large columns are often seen at Deer Park and
Channelview near industrial facilities, and at Conroe and West Houston
(likely from biogenic sources as well as transport from the industrial
regions).</p>
</sec>
</sec>
<sec id="Ch1.S6.SS2">
  <?xmltex \opttitle{Pandora {$\protect\chem{NO_{{2}}}$} column measurements}?><title>Pandora <inline-formula><mml:math id="M575" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column measurements</title>
      <p id="d1e8871">Figures <xref ref-type="fig" rid="Ch1.F8"/> and <xref ref-type="fig" rid="Ch1.F9"/>
show comparisons of GCAS tropospheric columns with Pandora <inline-formula><mml:math id="M576" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
columns derived from both DS and MAX-DOAS scattered light
retrievals, by day and by site. Figure <xref ref-type="fig" rid="Ch1.F10"/>
shows the Pandora measurements at four sites as a function of time, and GCAS
coincidences with those observations. In the case of the Pandora DS
observations, we have estimated the tropospheric Pandora column by
subtracting the modeled <inline-formula><mml:math id="M577" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> above the GCAS instrument (typically
<inline-formula><mml:math id="M578" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M579" display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M580" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) from the closest
Pandora observation in time within 3 min. The uncertainty in the
stratospheric <inline-formula><mml:math id="M581" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column in our model is estimated at 30 % (see
Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS3"/>). In the case of MAX-DOAS comparisons, we
compare a single GCAS observation over each site with the closest MAX-DOAS
observation within 20 <inline-formula><mml:math id="M582" display="inline"><mml:mi mathvariant="normal">min</mml:mi></mml:math></inline-formula>. For the comparison with DS observations, we
have determined the GCAS observation from the mean of GCAS ground pixels
intersected by the Pandora line of sight in the bottom 2 <inline-formula><mml:math id="M583" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> of the
atmosphere (shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/>). This helps to
minimize the influence of the Pandora viewing geometry on the comparison. For
instance, GCAS consistently measures large columns over the Deer Park site,
with some of the largest <inline-formula><mml:math id="M584" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> often to the north of the site;
however, when viewing the sun directly, Pandora always looks south into
cleaner air. The use of a GCAS <inline-formula><mml:math id="M585" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> amount determined along the
Pandora DS line of sight reduces the influence of these biased site locations
on the results, with an overall reduction in the GCAS-versus-Pandora bias of
20 %. There remain, however, several sites with an obvious difference in
GCAS versus Pandora DS measurements, despite considering the field of view.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e8999">Pandora direct-sun <inline-formula><mml:math id="M586" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> tropospheric columns vs. GCAS
<inline-formula><mml:math id="M587" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> tropospheric columns by day for cloud-free observations over
Houston during DISCOVER-AQ Texas 2013. The Pandora columns are the total
<inline-formula><mml:math id="M588" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns measured by Pandora minus the colocated modeled
stratospheric <inline-formula><mml:math id="M589" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns used in the GCAS analysis. All
correlations are statistically significant at the <inline-formula><mml:math id="M590" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.001</mml:mn></mml:mrow></mml:math></inline-formula> level except
for those of 14 (<inline-formula><mml:math id="M591" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.09</mml:mn></mml:mrow></mml:math></inline-formula>) and 27 (<inline-formula><mml:math id="M592" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) September. The solid line
represents the 1 : 1 ratio. The dotted line represents the reduced major
axis linear regression.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f08.png"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F9" specific-use="star"><caption><p id="d1e9091">Pandora <inline-formula><mml:math id="M593" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> tropospheric columns from direct-sun and
MAX-DOAS observations vs. GCAS <inline-formula><mml:math id="M594" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> tropospheric columns by site for
cloud-free observations over Houston during DISCOVER-AQ Texas 2013. The
Pandora direct-sun columns are the total <inline-formula><mml:math id="M595" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns measured by
Pandora minus the colocated modeled stratospheric <inline-formula><mml:math id="M596" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns used
in the GCAS analysis. The solid line represents the 1 : 1 ratio. The dotted
lines represent the reduced major axis linear regressions.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f09.png"/>

        </fig>

      <p id="d1e9145">Overall, GCAS tropospheric <inline-formula><mml:math id="M597" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is larger than Pandora
(GCAS<inline-formula><mml:math id="M598" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>Pandora <inline-formula><mml:math id="M599" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.50 for DS and 1.33 for MAX-DOAS), although the spatial
correlations are very good at <inline-formula><mml:math id="M600" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.85</mml:mn></mml:mrow></mml:math></inline-formula> (DS) and <inline-formula><mml:math id="M601" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.94</mml:mn></mml:mrow></mml:math></inline-formula> (MAX-DOAS).
A background offset of <inline-formula><mml:math id="M602" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M603" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is
seen between GCAS and the Pandora DS measurements, similar to that seen in
the P-3B comparisons. Again, this is most likely from uncertainties in the
modeled stratospheric correction and reference spectrum correction, with a
possible contribution from the Pandora reference as well. More surprisingly,
GCAS <inline-formula><mml:math id="M604" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is 50 % (DS) and 33 % (MAX-DOAS) larger at high
<inline-formula><mml:math id="M605" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e9262">Tropospheric <inline-formula><mml:math id="M606" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns from Pandora direct-sun (DS) and
MAX-DOAS observations as a function of time between 4 and 27 September at
Deer Park, La Porte, Moody Tower and Smith Point sites, and GCAS coincidences
with those observations, as well as stratospheric <inline-formula><mml:math id="M607" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from a model
at Pandora DS measurements. Pandora DS tropospheric columns are derived by
removing the modeled stratosphere from the retrieved Pandora total columns.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/5941/2018/amt-11-5941-2018-f10.png"/>

        </fig>

</sec>
<?pagebreak page5957?><sec id="Ch1.S6.SS3">
  <title>AMF from P-3B profiles</title>
      <p id="d1e9299">In order to assess the dependence of the GCAS observations on the profile
uncertainty, we also apply the P-3B profiles in place of model profiles in
the GCAS AMF calculations and compare the new GCAS columns with the P-3B and
Pandora columns. When the spiral profiles are applied to the GCAS
observations within their vicinity, the use of the observed profiles lowers
the overall slope of GCAS tropospheric <inline-formula><mml:math id="M608" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns by 4 %
(P-3B) and 2 % (Pandora) and the <inline-formula><mml:math id="M609" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns by 2 % (P-3B)
as compared with coincident observations. The <inline-formula><mml:math id="M610" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> correlations with
the P-3B and Pandora remain the same, but the correlation increases to
<inline-formula><mml:math id="M611" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.62</mml:mn></mml:mrow></mml:math></inline-formula> for P-3B <inline-formula><mml:math id="M612" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. Individual coincident observations can
change by as much as <inline-formula><mml:math id="M613" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> % to <inline-formula><mml:math id="M614" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula> % for <inline-formula><mml:math id="M615" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (mean change of
<inline-formula><mml:math id="M616" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> %) and <inline-formula><mml:math id="M617" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> % to <inline-formula><mml:math id="M618" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula> % for <inline-formula><mml:math id="M619" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (mean change of
<inline-formula><mml:math id="M620" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> %). The largest mean changes for a single day occur at the Deer
Park site in the Pandora comparisons, where the GCAS <inline-formula><mml:math id="M621" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column on
25 September is reduced by 15 % on average.</p>
</sec>
<sec id="Ch1.S6.SS4">
  <title>Discussion of coincident measurement comparisons</title>
      <p id="d1e9477">Overall, the GCAS observations correlate well spatially and temporally with
the P-3B and Pandora observations. The GCAS observations also show agreement
in magnitude with the P-3B-inferred <inline-formula><mml:math id="M622" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M623" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> columns
well within the measurement uncertainties. The GCAS <inline-formula><mml:math id="M624" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
observations are significantly higher than those of the Pandora direct-sun
instruments by 50 %. They are also higher than the Pandora MAX-DOAS by 33 %,
although there are fewer coincidences with the MAX-DOAS observations, and
there is good agreement at the La Porte site.</p>
      <p id="d1e9515">Differences between GCAS and the P-3B primarily result from errors in the
GCAS AMF (surface reflectance, aerosols and profile shape); the inability of
the P-3B to capture profiles of near-surface gases below 300 <inline-formula><mml:math id="M625" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> near
the Channelview, Manvel Croix and Moody Tower sites; and spatial variability
and P-3B sampling. Much of the variability observed in individual spirals in
the <inline-formula><mml:math id="M626" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column comparison in Fig. <xref ref-type="fig" rid="Ch1.F7"/> is due
to the large radius of the P-3B spiral, which can mean the P-3B sometimes
flies in and out of <inline-formula><mml:math id="M627" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> plumes, as seen in Fig. <xref ref-type="fig" rid="Ch1.F5"/>.</p>
      <p id="d1e9551">The differences between GCAS and Pandora <inline-formula><mml:math id="M628" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are much larger. GCAS
<inline-formula><mml:math id="M629" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns could be influenced by several uncertainties that can
result in cumulative biases in the AMF calculation (again, primarily from
errors in surface reflectance, aerosols and profile shape). Different factors
likely dominate the uncertainties at different sites; some sites are located
at locations with very inhomogeneous surface reflectance (Smith Point and
Moody Tower), and some at locations with large uncertainties in profile shape.
The slope is also dominated by the larger polluted measurements on
25 September, which was a day with complicated meteorology, a morning boundary
layer of <inline-formula><mml:math id="M630" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M631" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> (according to HSRL data) and uncertain
emissions <xref ref-type="bibr" rid="bib1.bibx85" id="paren.105"/>.</p>
      <?pagebreak page5958?><p id="d1e9596"><xref ref-type="bibr" rid="bib1.bibx85" id="text.106"/> also found a large difference between GCAS and Pandora
observations during the Texas campaign. By using a Bayesian inversion to
constrain the MODIS BRDF, they reduced the overestimation of GCAS relative to
Pandora by 23 % through a 0.023 increase in surface albedo, broadly
consistent with studies that have found a low bias in MODIS surface
reflectance <xref ref-type="bibr" rid="bib1.bibx101 bib1.bibx78" id="paren.107"/> at short wavelengths. The
exclusion of aerosols in our AMF calculation may cause the AMF to be
underestimated (and therefore the vertical column to be overestimated) in
some cases, particularly where scattering aerosols are in the lowest part of
the boundary layer (see discussion in Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS2"/>). We find
that the GCAS vertical columns at Pandora coincidences are reduced on average
by 10 % when the air mass factor is calculated using the nearest HSRL
aerosol optical thickness profiles below the aircraft for scattering
aerosols. In the previous section, we saw there is likely a small <inline-formula><mml:math id="M632" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> %
bias in the GCAS column from the use of CMAQ-modeled <inline-formula><mml:math id="M633" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile
shapes in measurements coincident with Pandora. Therefore, while profile
shape may contribute to large errors on individual observations, it is
unlikely to produce a large bias in the GCAS observations overall.</p>
      <p id="d1e9628">Differences in the GCAS and Pandora slant column retrievals themselves may
also play a role, including the wavelength fitting region and atmospheric
temperature assumptions. Previous comparisons of Pandora DS total column
<inline-formula><mml:math id="M634" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations with other ground-based observations have shown
good agreement <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx100" id="paren.108"/>. In contrast, <xref ref-type="bibr" rid="bib1.bibx40" id="text.109"/>
compared a year of Pandora zenith sky stratospheric <inline-formula><mml:math id="M635" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> slant
columns with those from a zenith-looking UV–Vis spectrometer (DOAS M07) from
the Network for the Detection of Atmospheric Composition Change (NDACC) using
different retrieval settings and found Pandora underestimated the NDACC
instrument by 7 %–40 %. The Pandora slant column product used in our study
was produced assuming a fixed effective temperature of 264 K, which could
result in a low bias in the retrieved Pandora slant column of 10 %
<xref ref-type="bibr" rid="bib1.bibx86" id="paren.110"/>.</p>
      <p id="d1e9662">Despite the sources of uncertainty on the GCAS columns, it should be noted
that a large reduction in the GCAS vertical columns from the use of different
AMF inputs resulting in better agreement with the Pandora columns would mean
a significant underestimation by GCAS of both the <inline-formula><mml:math id="M636" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M637" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> P-3B columns. Recent comparisons of Pandora DS <inline-formula><mml:math id="M638" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
columns and <inline-formula><mml:math id="M639" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> inferred from the P-3B P-CL instrument for the four
DISCOVER-AQ campaigns (Maryland, California, Texas and Colorado) show the
P-3B agrees well with Pandora DS measurements for all campaigns except Texas,
where Pandora <inline-formula><mml:math id="M640" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is significantly underestimated (Sungyeon Choi,
personal communication). Previous airborne comparisons with the GeoTASO
instrument during DISCOVER-AQ Texas on four relatively unpolluted or cloudy
days (13, 14, 18, 24 September) also suggested airborne <inline-formula><mml:math id="M641" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> larger
than Pandora <xref ref-type="bibr" rid="bib1.bibx67" id="paren.111"/>.</p>
</sec>
</sec>
<sec id="Ch1.S7" sec-type="conclusions">
  <title>Conclusions</title>
      <p id="d1e9744">We have presented trace gas retrievals of <inline-formula><mml:math id="M642" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M643" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
from the GCAS instrument during the DISCOVER-AQ Texas 2013 campaign. In these
retrievals, we first use a spectral fit to derive slant column densities from
nadir spectra, in combination with reference spectra measured over a clean
area. We then convert those slant columns to vertical columns using
tropospheric trace gas profiles from the CMAQ model and surface reflectance
from the MODIS BRDF product. At a spatial resolution of
250 <inline-formula><mml:math id="M644" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M645" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 500 <inline-formula><mml:math id="M646" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, the <inline-formula><mml:math id="M647" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> product has a mean
precision of <inline-formula><mml:math id="M648" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M649" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, and the
<inline-formula><mml:math id="M650" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> product has a mean precision of <inline-formula><mml:math id="M651" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M652" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. In order to meet TEMPO precision requirements, and
to detect enhanced <inline-formula><mml:math id="M653" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> during the DISCOVER-AQ Texas campaign, we
recommend <inline-formula><mml:math id="M654" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> be spatially averaged to 1 <inline-formula><mml:math id="M655" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>.
Uncertainties in <inline-formula><mml:math id="M656" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> polluted observations are dominated by air
mass factor uncertainties, which result primarily from uncertainties in
surface reflectance, aerosol loading and trace gas profile shape. These air
mass factor uncertainties also play a role in individual <inline-formula><mml:math id="M657" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
uncertainties but can be similar in magnitude to uncertainties from spectral
fitting noise.</p>
      <p id="d1e9943">Comparisons between GCAS and P-3B and Pandora observations show GCAS data are
very well correlated with these coincident measurements, but in some cases
they show differences in magnitude. GCAS columns agree well with those inferred
from P-3B in situ profiles for both <inline-formula><mml:math id="M658" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M659" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.89</mml:mn></mml:mrow></mml:math></inline-formula>; GCAS<inline-formula><mml:math id="M660" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>P-3B
slope <inline-formula><mml:math id="M661" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.90 and intercept <inline-formula><mml:math id="M662" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M663" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and
<inline-formula><mml:math id="M664" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M665" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.54</mml:mn></mml:mrow></mml:math></inline-formula>; GCAS<inline-formula><mml:math id="M666" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>P-3B slope=1.08 and
intercept <inline-formula><mml:math id="M667" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M668" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). The use of P-3B
profiles instead of modeled profile shapes results in a mean difference of
2 %–4 % in GCAS columns in comparisons with coincident observations. GCAS
is higher than Pandora MAX-DOAS tropospheric <inline-formula><mml:math id="M669" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns but shows
excellent spatial agreement (<inline-formula><mml:math id="M670" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.94</mml:mn></mml:mrow></mml:math></inline-formula>; GCAS<inline-formula><mml:math id="M671" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>Pandora slope <inline-formula><mml:math id="M672" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.33 and
intercept <inline-formula><mml:math id="M673" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M674" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>); these differences in
magnitude, however, remain within the bounds of GCAS systematic error
estimates in the AMF. The largest discrepancies in magnitude are seen between
GCAS and Pandora direct-sun observations, although spatial correlations are
very good (<inline-formula><mml:math id="M675" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.85</mml:mn></mml:mrow></mml:math></inline-formula>; GCAS<inline-formula><mml:math id="M676" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>Pandora slope <inline-formula><mml:math id="M677" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.50 and
intercept <inline-formula><mml:math id="M678" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M679" display="inline"><mml:mrow><mml:mi mathvariant="normal">molecules</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). As both Pandora and
GCAS are key instruments in planned TEMPO validation activities, there is
clearly a need to resolve these differences in magnitude to ensure reliable
validation studies. Further opportunities for comparisons over different
geographic areas and pollution regimes exist in other campaigns.</p>
      <p id="d1e10231">Since DISCOVER-AQ Texas in 2013, the airborne GCAS and GeoTASO instruments
have been deployed in the DISCOVER-AQ Colorado field campaign (2014),
KORUS-AQ field campaign (2016), GOES-R validation campaign (2017), Lake
Michigan Ozone Study (2017) and Long Island Sound Tropospheric Ozone Study
(2018). These data are currently under study and offer further opportunities
to examine the effects of surface characterization, profile shape,<?pagebreak page5959?> aerosols,
viewing geometries and trace gas heterogeneity on ground, airborne and
satellite remotely sensed trace gas columns.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e10238">The GCAS and P-3B <inline-formula><mml:math id="M680" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M681" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">HO</mml:mi></mml:mrow></mml:math></inline-formula> data and
Pandora direct-sun <inline-formula><mml:math id="M682" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns are publicly available from the
DISCOVER-AQ data archive at
<uri>http://www-air.larc.nasa.gov/missions/discover-aq/discover-aq.html</uri>
(last access: 23 October 2018) <xref ref-type="bibr" rid="bib1.bibx64" id="paren.112"/>. The archived GCAS data
also include coincident model profiles for each observation.</p>
  </notes><notes notes-type="authorcontribution">

      <p id="d1e10285">CRN performed the slant column retrievals, air mass
factor calculations and instrument comparisons, and wrote the manuscript.
CRN, XL and KC initiated and designed the research. SJJ and MGK collected and
calibrated the GCAS spectra. HAK assisted in the analysis of spectra and
slant column retrievals. GGA provided the radiative transfer model and guided
interpretations. MBFC, CPL and KEP provided the CMAQ model simulations. AF,
DR, JW, PW and AJW collected and provided the P-3B in situ aircraft data. JRH
and ES provided the Pandora data. LMJ provided in situ data for correcting
Pandora observations at Moody Tower. All authors contributed to
interpretations and edited the manuscript.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e10291">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e10297">This study was supported under NASA grants NNX14AR69G and NNX17AE09G. MODIS
MCD43GF V005 data were provided by the MODIS remote-sensing group at the
University of Massachusetts Boston. We thank Amir Souri for helpful
discussions.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: Michel Van Roozendael <?xmltex \hack{\newline}?>
Reviewed by: two anonymous referees</p></ack><ref-list>
    <title>References</title>

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    <!--<article-title-html>Nitrogen dioxide and formaldehyde measurements from the GEOstationary Coastal and Air Pollution Events (GEO-CAPE) Airborne Simulator over Houston, Texas</article-title-html>
<abstract-html><p>The GEOstationary Coastal and Air Pollution Events (GEO-CAPE)
Airborne Simulator (GCAS) was developed in support of NASA's decadal survey
GEO-CAPE geostationary satellite mission. GCAS is an airborne push-broom
remote-sensing instrument, consisting of two channels which make
hyperspectral measurements in the ultraviolet/visible (optimized for air
quality observations) and the visible–near infrared (optimized for ocean
color observations). The GCAS instrument participated in its first intensive
field campaign during the Deriving Information on Surface Conditions from
Column and Vertically Resolved Observations Relevant to Air Quality
(DISCOVER-AQ) campaign in Texas in September 2013. During this campaign, the
instrument flew on a King Air B-200 aircraft during 21 flights on 11 days to
make air quality observations over Houston, Texas. We present GCAS trace gas
retrievals of nitrogen dioxide (NO<sub>2</sub>) and formaldehyde
(CH<sub>2</sub>O), and compare these results with trace gas columns derived
from coincident in situ profile measurements of NO<sub>2</sub> and
CH<sub>2</sub>O made by instruments on a P-3B aircraft, and with NO<sub>2</sub>
observations from ground-based Pandora spectrometers operating in direct-sun
and scattered light modes. GCAS tropospheric column measurements correlate
well spatially and temporally with columns estimated from the P-3B
measurements for both NO<sub>2</sub> (<i>r</i><sup>2</sup> = 0.89) and CH<sub>2</sub>O
(<i>r</i><sup>2</sup> = 0.54) and with Pandora direct-sun (<i>r</i><sup>2</sup> = 0.85) and scattered light
(<i>r</i><sup>2</sup> = 0.94) observed NO<sub>2</sub> columns. Coincident GCAS columns agree
in magnitude with NO<sub>2</sub> and CH<sub>2</sub>O P-3B-observed columns to
within 10&thinsp;% but are larger than scattered light Pandora tropospheric
NO<sub>2</sub> columns by 33&thinsp;% and direct-sun Pandora NO<sub>2</sub>
columns by 50&thinsp;%.</p></abstract-html>
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