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  <front>
    <journal-meta><journal-id journal-id-type="publisher">AMT</journal-id><journal-title-group>
    <journal-title>Atmospheric Measurement Techniques</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1867-8548</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-11-6833-2018</article-id><title-group><article-title>BOREAS – a new MAX-DOAS profile retrieval algorithm for aerosols and trace gases</article-title><alt-title>The MAX-DOAS profile retrieval algorithm BOREAS</alt-title>
      </title-group><?xmltex \runningtitle{The MAX-DOAS profile retrieval algorithm BOREAS}?><?xmltex \runningauthor{T. B\"{o}sch et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Bösch</surname><given-names>Tim</given-names></name>
          <email>tim.boesch@iup.physik.uni-bremen.de</email>
        <ext-link>https://orcid.org/0000-0003-4230-8129</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Rozanov</surname><given-names>Vladimir</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Richter</surname><given-names>Andreas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3339-212X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff10">
          <name><surname> Peters</surname><given-names>Enno</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Rozanov</surname><given-names>Alexei</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Wittrock</surname><given-names>Folkard</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Merlaud</surname><given-names>Alexis</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff9">
          <name><surname>Lampel</surname><given-names>Johannes</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7370-9342</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Schmitt</surname><given-names>Stefan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-7742-4990</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>de Haij</surname><given-names>Marijn</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Berkhout</surname><given-names>Stijn</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5447-8868</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Henzing</surname><given-names>Bas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6456-8189</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Apituley</surname><given-names>Arnoud</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8821-6348</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>den Hoed</surname><given-names>Mirjam</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Vonk</surname><given-names>Jan</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7 aff8">
          <name><surname>Tiefengraber</surname><given-names>Martin</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7 aff8">
          <name><surname>Müller</surname><given-names>Moritz</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5284-5425</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Burrows</surname><given-names>John Philip</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1547-8130</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Institute of Environmental Physics, University of Bremen, Bremen, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Royal Netherlands Meteorological Institute (KNMI), De Bilt, the Netherlands</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Institute of Environmental Physics, University of Heidelberg, Heidelberg, Germany</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Royal Belgian Institute for Space Aeronomy (BIRA-IASB), Brussels, Belgium</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Netherlands Organization for Applied Scientific Research (TNO), Utrecht, the Netherlands</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>LuftBlick, Kreith, Austria</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Institute of Atmospheric and Cryospheric Sciences, University of Innsbruck, Innsbruck, Austria</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>Airyx GmbH, Eppelheim, Germany</institution>
        </aff>
        <aff id="aff10"><label>a</label><institution>now at: Institute for Protection of Maritime Infrastructures, Bremerhaven, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Tim Bösch (tim.boesch@iup.physik.uni-bremen.de)</corresp></author-notes><pub-date><day>21</day><month>December</month><year>2018</year></pub-date>
      
      <volume>11</volume>
      <issue>12</issue>
      <fpage>6833</fpage><lpage>6859</lpage>
      <history>
        <date date-type="received"><day>9</day><month>May</month><year>2018</year></date>
           <date date-type="rev-request"><day>25</day><month>June</month><year>2018</year></date>
           <date date-type="rev-recd"><day>12</day><month>November</month><year>2018</year></date>
           <date date-type="accepted"><day>30</day><month>November</month><year>201</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018.html">This article is available from https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018.html</self-uri><self-uri xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018.pdf</self-uri>
      <abstract>
    <p id="d1e299">We present a new MAX-DOAS profiling algorithm for aerosols and trace gases,
BOREAS, which utilizes an iterative solution method including Tikhonov
regularization and the optimal estimation technique. The aerosol profile
retrieval is based on a novel approach in which the absorption depth of
<inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is directly used in order to retrieve extinction coefficient
profiles instead of the commonly used perturbation theory method. The
retrieval of trace gases is done with the frequently used optimal estimation
method but significant improvements are presented on how to deal with wrongly
weighted a priori constraints and for scenarios in which the a priori profile
is inaccurate.</p>
    <p id="d1e313">Performance tests are separated into two parts. First, we address the general
sensitivity of the retrieval to the example of synthetic data calculated with
the radiative transfer model SCIATRAN. In the second part of the study, we
demonstrate BOREAS profiling accuracy by validating the results with the help of
ancillary measurements carried out during the CINDI-2 campaign in Cabauw, the
Netherlands, in 2016.</p>
    <p id="d1e316">The synthetic sensitivity tests indicate that the regularization between
measurement and a priori constraints is insufficient when knowledge of the
true state of the atmosphere is poor. We demonstrate a priori pre-scaling and
extensive regularization tests as a tool for the optimization of retrieved
profiles. The comparison of retrieval results with in situ, ceilometer,
<inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar, sonde and long-path DOAS measurements during the CINDI-2
campaign always shows high correlations with coefficients greater than 0.75.
The largest differences can be found in the morning hours, when the planetary
boundary layer is not yet fully developed and the concentration of trace
gases and aerosol, as a result of a low night-time boundary layer having
formed, is focused in a shallow, near-surface layer.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e337">Aerosols and trace gases play an important role for life on Earth as high
concentrations have adverse impacts on human health and climate. Furthermore,
aerosols impact the Earth's energy budget by radiative forcing. They interact
with solar radiation by scattering and absorption processes.<?pagebreak page6834?> Additionally,
they have an impact on the formation of clouds when acting as cloud
condensation nuclei (CCN). Despite considerable efforts by the scientific
community, uncertainties in aerosol radiative forcing are still high
<xref ref-type="bibr" rid="bib1.bibx42" id="paren.1"/>.</p>
      <p id="d1e343">In addition to aerosols, atmospheric trace gases are of importance in an
increasingly urbanized world as they impact human health, agriculture,
acid deposition and climate (e.g. <xref ref-type="bibr" rid="bib1.bibx25" id="altparen.2"/>). Trace
gases in the troposphere such as nitrogen dioxide and sulfur dioxide
(<inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), nitrous acid (<inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HONO</mml:mi></mml:mrow></mml:math></inline-formula>), formaldehyde
(<inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">HCHO</mml:mi></mml:mrow></mml:math></inline-formula>) and glyoxal (<inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CHOCHO</mml:mi></mml:mrow></mml:math></inline-formula>) need to be measured to assess their
impact on air quality and because their spatial and temporal inhomogeneous
distributions provide information on different emission sources, e.g. the
combustion of fossil fuels, biomass burning and agriculture
<xref ref-type="bibr" rid="bib1.bibx51 bib1.bibx21 bib1.bibx30 bib1.bibx15" id="paren.3"/>.
The separation and identification of anthropogenic from natural sources, as
well as measurements of their temporal variability, improve the understanding
of their effects on climate and life on Earth. The current lack of knowledge
leads to uncertainties in temporal and spatial emission patterns of trace
gases and aerosols and limits our ability to fully understand atmospheric
processes. This results in a need for comprehensive measurements to fill
these gaps.</p>
      <p id="d1e399">For more than 15 years, Multi-Axis Differential Optical Absorption
Spectroscopy (MAX-DOAS) measurements have been used to investigate the
chemical composition of the troposphere
<xref ref-type="bibr" rid="bib1.bibx19 bib1.bibx2 bib1.bibx26 bib1.bibx51 bib1.bibx47 bib1.bibx44" id="paren.4"/>.
This passive remote-sensing method is based on absorption spectroscopy
applied to measurements of scattered sunlight. The advantages of ground-based
MAX-DOAS when compared to satellite observations are the high sensitivity for
the lowermost layers of the troposphere, the high temporal and spatial
resolution of measurements and the lower cost.</p>
      <p id="d1e405">The strength of the absorption signal detected in scattered sunlight depends
on the absorber amounts and their vertical distribution but also on the
length of the light path. In general, this length in a certain altitude layer
is a function of the measurement geometry. Therefore, a set of MAX-DOAS
radiance measurements taken at different elevation angles (lines of sight,
LOSs) contains information about the vertical distribution of trace gases,
which can be retrieved. However, the retrieval of absorber profiles from
MAX-DOAS measurements is an ill-posed problem that needs additional
constraints (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>). Thus, the inversion, which is
applied to retrieve vertical concentration profiles, is done by elaborated
mathematical methods such as optimal estimation (OE). In addition to the
trace gas profile, the aerosol extinction profile needs to be retrieved as
well as it has a non-linear effect on the trace gas retrieval and it is too
variable to be approximated by climatologies. In contrast to the trace gas
retrievals, aerosol retrievals are strongly non-linear, necessitating
iterative inversion schemes such as the Gauss–Newton algorithm or the
Levenberg–Marquardt algorithm <xref ref-type="bibr" rid="bib1.bibx35" id="paren.5"/>.</p>
      <p id="d1e414">Profile retrieval algorithms used in the scientific community are either
inversion algorithms or parameterized approaches. Inversion algorithms
directly link the measurement quantity to the vertical profile of the target
absorber with the help of a forward model
<xref ref-type="bibr" rid="bib1.bibx51 bib1.bibx14 bib1.bibx47 bib1.bibx9 bib1.bibx50 bib1.bibx5 bib1.bibx49" id="paren.6"/>. This
model is usually calculated with a radiative transfer model (RTM), assuming a
selected set of atmospheric conditions. For trace gases, the model also
includes a sensitivity matrix which can be considered derivative of the
measurement quantity with respect to the trace gas concentration for each
altitude level. For aerosols, this sensitivity matrix is normally calculated
via perturbation theory. This perturbation approach is shortly summarized as
follows: by consideration of a trace gas with a well-known vertical
distribution such as the oxygen dimer <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (or short <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>),
the aerosol extinction for each layer is changed gradually and the resulting
modelled observations for different LOSs are compared with measurements until
the iteration converges (e.g. the difference between the measurement and modelled
quantity is small enough).</p>
      <p id="d1e449">Parameterization, on the other hand, means that a forward model, based on a
limited set of parameters, is used to describe the measurement quantity.
Frequently used forward model parameters are integrated values and profile
information such as shape and height of certain absorber layers
<xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx24 bib1.bibx27 bib1.bibx45 bib1.bibx48 bib1.bibx41" id="paren.7"/>.
The forward model results are calculated with an RTM and are least-squares
fitted to the measurements. Generally, look-up tables (LUTs) are
pre-calculated for a set of different scenarios, parameters and geometries
covering all relevant atmospheric conditions, avoiding high computational
efforts during near-real-time calculations.</p>
      <p id="d1e455">Inversion algorithms have the advantage that they are not limited to the
scenarios used when creating the LUT but unrealistic profiles are possible
when the measurement, inversion or regularization (weighting between the
information from measurements and a priori information) is poor. On the
other hand, parameterized approaches evaluate profiles much faster, as the
slow forward model computation was already done when creating the LUT.</p>
      <p id="d1e458">Although efforts to derive concentration profiles from MAX-DOAS
measurements have been made for more than one decade, profiling is still a
difficult task and the results of different algorithms can differ strongly when
the absorber of interest is highly variable and inhomogeneous on spatial and
temporal scales
<xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx46 bib1.bibx10" id="paren.8"/>.
Comparison studies of different profiling algorithms for synthetic as well as
for real data, summarizing the current state of the art and including results
from the algorithm introduced here, will be reported by <xref ref-type="bibr" rid="bib1.bibx11" id="text.9"/> and <xref ref-type="bibr" rid="bib1.bibx43" id="text.10"/>.</p>
      <?pagebreak page6835?><p id="d1e470">The purpose of this study is the introduction of IUP Bremen's new MAX-DOAS
profile retrieval algorithm for aerosols and trace gases BOREAS (Bremen
Optimal estimation REtrieval for Aerosols and trace gaseS), which has been
developed to improve the earlier profile retrieval algorithm
<xref ref-type="bibr" rid="bib1.bibx50" id="paren.11"/>. BOREAS uses a novel approach for the
retrieval of aerosols but a similar optimal estimation technique for the
retrieval of trace gases. In contrast to perturbation-based inversion
algorithms, BOREAS uses the change (from an a priori state) of depth in an
absorption band to get information on the aerosol content which caused this
change. To the authors' knowledge, this approach has never been used within
an operational profiling algorithm and it complements the variety of methods
with another promising technique. In order to improve the standard OE method
for trace gases, a simple way of changing the weighting between a priori and
measurement constraints is introduced by varying a regularization factor so
that oscillations are minimized. Additionally, the usage of a priori
pre-scaling is highlighted as one way of improving the results when the a priori
profile is far away from the real atmosphere.</p>
      <p id="d1e476">The development of BOREAS is aimed at several key properties:
<list list-type="order"><list-item>
      <p id="d1e481">Flexibility: the algorithm should retrieve aerosol and trace gas profiles
from any MAX-DOAS measurement with pre-filtering options for the data.</p></list-item><list-item>
      <p id="d1e485">Accuracy and stability: the algorithm should be stable in terms of varying
atmospheric conditions when retrieving profiles for several years of data. The profiling
results (modelled observation) should fit the measured observations with a high accuracy.</p></list-item><list-item>
      <p id="d1e489">Automation: the retrieval should respond to problematic data/settings
(e.g. low information content, wrong regularization) automatically with an included problem solution scheme.</p></list-item><list-item>
      <p id="d1e493">Fast: the algorithm should be fast enough to allow near-real-time profile
retrievals.</p></list-item></list>
The paper is organized as follows: in the first section, a typical
MAX-DOAS measurement and its information content are shortly described. The
next section focuses on the theoretical background of the retrieval
algorithm. This section is followed by a detailed sensitivity study. The
fourth section is divided into an analysis of synthetic data, a discussion of error
sources and an example of application to real measurements, which shows that
BOREAS is able to retrieve profiles with high reliability and accuracy. The
final section (Sect. 5) concludes and summarizes the results presented in
this study.</p>
</sec>
<sec id="Ch1.S2">
  <title>MAX-DOAS measurements and the DOAS retrieval</title>
      <p id="d1e503">Modern ground-based MAX-DOAS instruments are capable of measuring scattered
sunlight in the ultraviolet (UV) and visible (VIS) spectral range with a full
azimuthal and elevation angle coverage of the hemisphere (see
Fig. <xref ref-type="fig" rid="Ch1.F1"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e510">Schematic representation of typical MAX-DOAS measurement
geometries.</p></caption>
        <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f01.png"/>

      </fig>

      <p id="d1e519">In general, the spectral least-squares fit of absorption cross sections and a
polynomial to the slant optical thickness (logarithm of a Sun-normalized
radiance at a certain LOS, also called slant optical thickness, SOT) <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>ln⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>I</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mi>I</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (DOAS fit) provides integrated concentrations <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> along the
light path <inline-formula><mml:math id="M12" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula>, the slant column densities <inline-formula><mml:math id="M13" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> (or SCD)
<xref ref-type="bibr" rid="bib1.bibx32" id="paren.12"/>. The length of the light path <inline-formula><mml:math id="M14" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> depends on
the Sun's position, the scattering properties of the atmosphere and on the
viewing geometry. For ground-based measurements, the extraterrestrial solar
spectrum <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is usually replaced by an intensity spectrum measured in the
zenith direction <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (reference spectrum) to compensate for
Fraunhofer lines and instrumental issues (e.g. temperature dependent
wavelength shifts). As this zenith spectrum itself is usually contaminated by
the absorber of interest to some extent, the difference between the two SCDs,
<inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> is retrieved and referred to as differential SCD. The differential
optical thickness <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of a certain absorber <inline-formula><mml:math id="M19" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> only, is defined
as
          <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M20" display="block"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>S</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the spectral absorption cross section and
<inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>=</mml:mo><mml:mo mathvariant="italic">{</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">φ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="italic">ϑ</mml:mi><mml:mo mathvariant="italic">}</mml:mo></mml:mrow></mml:math></inline-formula> represents the angular
variables. Here, <inline-formula><mml:math id="M23" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> is the elevation angle (or LOS), <inline-formula><mml:math id="M24" display="inline"><mml:mi mathvariant="italic">φ</mml:mi></mml:math></inline-formula> is the
relative azimuth angle (RAA) between the Sun and viewing azimuth, and <inline-formula><mml:math id="M25" display="inline"><mml:mi mathvariant="italic">ϑ</mml:mi></mml:math></inline-formula>
is the solar zenith angle (SZA).</p>
      <p id="d1e748">When using a single zenith spectrum measured around noon as <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>,
the tropospheric signal in <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is minimized, but for absorbers,
which are also present in the stratosphere, stratospheric absorption
contributes significantly to <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> in the morning and evening. This is
due to diurnal variations in the stratospheric amounts of some absorbers such
as <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and the change in light paths through the stratosphere because
of varying SZA (see e.g. <xref ref-type="bibr" rid="bib1.bibx26" id="altparen.13"/>). To minimize the
stratospheric signal, a reference spectrum measured close in time to the
intensity <inline-formula><mml:math id="M30" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> for a certain geometry is applied. Usually, a scan of
measurements in different elevation angles is followed by a measurement in
the zenith direction<?pagebreak page6836?> so that the whole scan can be fitted with the same reference
spectrum.</p>
      <p id="d1e806">The ratio of slant column density <inline-formula><mml:math id="M31" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> and the vertically integrated absorber
concentration <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mi>V</mml:mi><mml:mo>=</mml:mo><mml:msubsup><mml:mo>∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi>H</mml:mi></mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mtext>d</mml:mtext><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> (vertical column density or VCD,
<inline-formula><mml:math id="M33" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula>) is called the air mass factor, <inline-formula><mml:math id="M34" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula> (AMF).
          <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M35" display="block"><mml:mrow><mml:mi>M</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo><mml:mo>≡</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mi>V</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>
        Generally, this value depends on the radiative transfer through the
atmosphere and on parameters such as SZA, surface albedo, wavelength and the
profiles of aerosols and gaseous absorbers. For trace gases in the boundary
layer, it can, in a first approximation, be described by the geometric air mass
factor
          <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M36" display="block"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mtext>geom</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mi>V</mml:mi></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        assuming that the trace gas layer is located below the last scattering point
<xref ref-type="bibr" rid="bib1.bibx20" id="paren.14"/>. The differential AMF (dAMF), assuming a zenith
reference spectrum, is then <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>M</mml:mi><mml:mo>=</mml:mo><mml:mi>S</mml:mi><mml:mo>/</mml:mo><mml:mi>V</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mtext>ref</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mi>V</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The difference between geometric and true AMF
depends strongly on the wavelength, elevation angle, relative azimuth angle
and aerosols.</p>
      <p id="d1e1000">Because of the altitude-dependent concentration of absorbers, there is a need
for a similar quantity describing the ratio of <inline-formula><mml:math id="M38" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M39" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula> in a certain
layer. The concept of the box air mass factor <inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">M</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (BAMF) introduces
this height dependence by defining the ratio for each altitude layer <inline-formula><mml:math id="M41" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>:
          <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M42" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">M</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Here, <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">M</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> depends on the altitude in contrast to the total AMF
<inline-formula><mml:math id="M44" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula>. Box air mass factors are calculated by radiative transfer models and can
be understood as sensitivity of the partial slant column to the partial
vertical column at a certain altitude. On the other hand, multiplication of a
profile of partial vertical columns with <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">M</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> leads to the
corresponding slant column density.</p>
</sec>
<sec id="Ch1.S3">
  <title>Retrieval algorithm description</title>
      <p id="d1e1112">The profile retrieval algorithm BOREAS was developed in order to retrieve
aerosol and trace gas vertical profiles from MAX-DOAS measurements. The
aerosol retrieval is fully implemented within the RTM SCIATRAN
<xref ref-type="bibr" rid="bib1.bibx38" id="paren.15"/> to decrease computation time for the iterative
minimization scheme. BOREAS is a Python-written analysis script, which calls
<?xmltex \hack{\mbox\bgroup}?>SCIATRAN<?xmltex \hack{\egroup}?> for the aerosol retrieval and for calculations of BAMF
matrices, which are then used within an optimal-estimation-based trace gas
retrieval. A flow chart depicting BOREAS is shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. In
the next subsections, we give an overview of the individual steps of the
algorithm.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e1126">BOREAS analysis flow chart. The algorithm is separated into two
steps. Step 1: aerosol retrieval within a Tikhonov regularization. Step 2:
optimal-estimation-based trace gas retrieval.</p></caption>
        <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f02.png"/>

      </fig>

<sec id="Ch1.S3.SS1">
  <title>Retrieval of aerosol profiles</title>
      <p id="d1e1140">The standard DOAS fit does not provide direct information about aerosols
present in the atmosphere. However, the scattering and absorption properties
of aerosols have an impact on the measured differential slant column density
<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> because scattering processes can significantly
modify the light path. Since the single-scattering albedo <inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> (SSA)
stays more or less constant when the aerosol type does not change over time
and altitude, it is not a quantity to be retrieved in BOREAS and is kept
constant with typical values for the prevalent aerosol type (e.g. urban
pollution: SSA <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.92</mml:mn></mml:mrow></mml:math></inline-formula>). The angular scattering distribution of aerosols
is fully quantified by the scattering phase function. Within BOREAS, we use
the Henyey–Greenstein approximation <xref ref-type="bibr" rid="bib1.bibx16" id="paren.16"/> with
constant values for the asymmetry factor <inline-formula><mml:math id="M49" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula>, which quantifies the amount of
forward and backward scattering (e.g. urban pollution: <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mi>g</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.68</mml:mn></mml:mrow></mml:math></inline-formula>). In this
parameterization, the optical properties of aerosols are fully defined with
<inline-formula><mml:math id="M51" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula>, SSA and an extinction coefficient profile <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The
latter is the retrieval parameter for BOREAS aerosol retrievals. Note that
the usage of measured phase functions will be implemented in BOREAS in the
future, since Henyey–Greenstein is in some situations not an accurate
representation of the atmospheric aerosol scattering distribution.</p>
      <p id="d1e1223">If <inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is known, then the aerosol optical thickness (AOT)
can be determined as <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>aer</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mo>∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi>H</mml:mi></mml:msubsup><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mtext>d</mml:mtext><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>, where the integration is performed over the entire atmosphere. If
the vertical profile of an absorber number density is known, differences
between modelled and measured <inline-formula><mml:math id="M55" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> for this absorber are the result of
differences between the assumed and real aerosol profiles. As observations at
different LOSs have varying sensitivity to the presence of aerosols at
different altitudes, this can be used to retrieve an aerosol profile.</p>
      <p id="d1e1285">Generally, the vertical profiles of species in the troposphere are unknown
because of the temporal and spatial variability of emission sources,
transport and conversion processes. However, the oxygen monomer <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is
in this respect an exceptional species because it only depends on pressure
and temperature. Furthermore, as the oxygen dimer <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration is
proportional to the squared monomer concentration, its profile
exponentially decreases with altitude as well. The <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> slant column
density can easily be determined because <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has spectral absorption
features in the wavelength regions of most DOAS fits. Detailed sensitivity
studies of <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> measurements regarding
changes in atmospheric aerosol properties can be found in
<xref ref-type="bibr" rid="bib1.bibx47" id="text.17"/> and <xref ref-type="bibr" rid="bib1.bibx9" id="text.18"/>.</p>
      <?pagebreak page6837?><p id="d1e1366">In the BOREAS aerosol retrieval algorithm, the difference between modelled
and measured <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> differential slant optical thicknesses
<inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (DSOT) is used to retrieve aerosol
extinction profiles in an iterative process. The measured
<inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is calculated using Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>),
where <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>S</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the DSCD retrieved in the framework of
the standard DOAS fit, and the simulated <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> DSOT (<inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>) is calculated as follows:
            <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M68" display="block"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>ln⁡</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>I</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mtext>ref</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mi>I</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mtext>ref</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are the intensities calculated using SCIATRAN under the
assumption that <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the only absorber. The dependency on the
reference geometry <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is summarized with the index
“ref” and will be neglected from now on. The vertical profiles of pressure
and temperature are used according to the US standard atmosphere model
<xref ref-type="bibr" rid="bib1.bibx28" id="paren.19"/> but can be replaced by measured atmospheric conditions
when available. The aerosol loading is described using an a priori
concentration number density vertical profile <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1678">The inverse problem with respect to the aerosol optical depth is then
formulated as
            <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M74" display="block"><mml:mrow><mml:msup><mml:mfenced close="∥" open="∥"><mml:mrow><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>⟶</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is a polynomial of lower order and its
argument <inline-formula><mml:math id="M76" display="inline"><mml:mi mathvariant="bold">Ω</mml:mi></mml:math></inline-formula> emphasizes that polynomial coefficients depend on
the LOS angle. The assumptions made in this formulation are that (1) the
<inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> absorption derived from the measurements does not depend on the
concentration of other trace gases and (2) that the optical depth in an
atmosphere without other absorbers can be described as the sum of the
<inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> optical depth and a low-order polynomial.</p>
      <p id="d1e1809">Since <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is a
non-linear and complicated functional of <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, an analytical
solution of this minimization problem does not exist. To simplify the
solution of the minimization problem given by Eq. (<xref ref-type="disp-formula" rid="Ch1.E6"/>), let us
consider the variation of DSOT caused by the variation of the aerosol number
density. The variation of DSOT in a linear approximation can be represented
in the form of the following functional Tailor series
<xref ref-type="bibr" rid="bib1.bibx37" id="paren.20"/>:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M81" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E7"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi>H</mml:mi></mml:munderover><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">δ</mml:mi><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mtext>d</mml:mtext><mml:mi>z</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mtext>lin</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

           <?pagebreak page6838?> where<?xmltex \hack{\newpage}?>
            <disp-formula id="Ch1.Ex2"><mml:math id="M82" display="block"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mfenced close="|" open=""><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:msub></mml:mrow></mml:math></disp-formula>
          is a functional derivative of DSOT with respect to the aerosol number density
profile <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> around the initial guess <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
<inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is usually referred to as the weighting function
and <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mtext>lin</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the linearization error.</p>
      <p id="d1e2186">It follows that the weighting function provides a linear relationship between
the variation of DSOT and the variation of an aerosol number density
<inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> around the initial guess <inline-formula><mml:math id="M88" display="inline"><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>. Now inserting
Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>) into Eq. (<xref ref-type="disp-formula" rid="Ch1.E6"/>) and approximating the
integral with a finite sum, we have

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M89" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E8"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo mathsize="2.5em">‖</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced close="∥" open=""><mml:mrow><mml:mo>-</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>L</mml:mi></mml:munderover><mml:mi mathvariant="script">W</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi>P</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>⟶</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            Here, <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M91" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> is the number of altitude levels, and
<inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:mi mathvariant="script">W</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">Ω</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is defined to satisfy the
trapezoidal integration rule.</p>
      <p id="d1e2468">The solution of the minimization problem given by Eq. (<xref ref-type="disp-formula" rid="Ch1.E8"/>) is
performed on a discrete wavelength grid. In fact, only five wavelengths over
the <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> absorption band centred, for example, at 477 nm are used.</p>
      <p id="d1e2484">The minimization problem can be reformulated in the following vector–matrix
form:
            <disp-formula id="Ch1.E9" content-type="numbered"><mml:math id="M94" display="block"><mml:mrow><mml:msup><mml:mfenced open="∥" close="∥"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>⟶</mml:mo><mml:mo movablelimits="false">min⁡</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Here, the vector <inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mo>|</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>N</mml:mi></mml:msub><mml:msup><mml:mo>|</mml:mo><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> has the dimension
<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>⋅</mml:mo><mml:mi>M</mml:mi></mml:mrow></mml:math></inline-formula> and describes the difference between measured and simulated DSOT
at <inline-formula><mml:math id="M97" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> LOS angles and <inline-formula><mml:math id="M98" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula> wavelengths. The <inline-formula><mml:math id="M99" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula>th element of vectors
<inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the differential slant optical depth
of <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at wavelength <inline-formula><mml:math id="M103" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula>, given by

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M104" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E10"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo mathvariant="italic">{</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:msub><mml:mo mathvariant="italic">}</mml:mo><mml:mi>m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>-</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>,</mml:mo><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi>m</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mi>M</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E11"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo mathvariant="italic">{</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi mathvariant="bold-italic">n</mml:mi></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:msub><mml:mo mathvariant="italic">}</mml:mo><mml:mi>m</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">τ</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>-</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where the superscript “<inline-formula><mml:math id="M105" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>” denotes that a polynomial is subtracted. The
state vector <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:math></inline-formula> has the dimension <inline-formula><mml:math id="M107" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> and matrix <inline-formula><mml:math id="M108" display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula>
has the dimension <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>N</mml:mi><mml:mo>⋅</mml:mo><mml:mi>M</mml:mi><mml:mo>)</mml:mo><mml:mo>×</mml:mo><mml:mi>L</mml:mi></mml:mrow></mml:math></inline-formula>; i.e. the matrix consists of
<inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>⋅</mml:mo><mml:mi>M</mml:mi></mml:mrow></mml:math></inline-formula> rows and <inline-formula><mml:math id="M111" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> columns. The <inline-formula><mml:math id="M112" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>th row of matrix <inline-formula><mml:math id="M113" display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> is
then given by

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M114" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E12"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo mathvariant="italic">{</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:msub><mml:mo mathvariant="italic">}</mml:mo><mml:mi>r</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mfenced close="}" open="{"><mml:mrow><mml:msup><mml:mi mathvariant="script">W</mml:mi><mml:mo>-</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:msup><mml:mi mathvariant="script">W</mml:mi><mml:mo>-</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msup><mml:mi mathvariant="script">W</mml:mi><mml:mo>-</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="bold">Ω</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>L</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtext>with</mml:mtext><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi>n</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo><mml:mi>M</mml:mi><mml:mo>+</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            and contains weighting functions for the <inline-formula><mml:math id="M115" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula>th wavelength, <inline-formula><mml:math id="M116" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>th LOS in <inline-formula><mml:math id="M117" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula>
layers.</p>
      <p id="d1e3061">The minimization problem given by Eq. (<xref ref-type="disp-formula" rid="Ch1.E9"/>) is solved by employing an
iterative Tikhonov regularization technique <xref ref-type="bibr" rid="bib1.bibx35" id="paren.21"/>:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M118" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E13"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi><mml:mi>T</mml:mi></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:msub><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>t</mml:mi><mml:mi>T</mml:mi></mml:msubsup><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi><mml:mi>T</mml:mi></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            Here, <inline-formula><mml:math id="M119" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> is the iteration number, <inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the
a priori and measurement covariance matrices, <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the weighting
function matrix calculated using the estimated aerosol number density profile
<inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the first-order derivative matrix with
Tikhonov parameter <inline-formula><mml:math id="M125" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow></mml:math></inline-formula> are the a priori profile and the
representing a priori measurement vector respectively.
Equation (<xref ref-type="disp-formula" rid="Ch1.E13"/>) is solved in the logarithmic space in order to avoid
negative values.</p>
      <p id="d1e3336">There are three criteria to stop the iteration process:
<list list-type="bullet"><list-item>
      <p id="d1e3341">Convergence in parameter space, i.e. the maximum difference between the
components of the state vector at two subsequent iterative steps does not exceed the
selected criterion (e.g. 0.0001 km<inline-formula><mml:math id="M128" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>);</p></list-item><list-item>
      <p id="d1e3357">The root mean square difference between measured and simulated <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
DSOT is less than selected (e.g. 0.001);</p></list-item><list-item>
      <p id="d1e3372">The maximum number of iterations is reached.</p></list-item></list>
In addition to the equations above, here we introduce other quantities which
are useful for describing the retrieval. The gain matrix
            <disp-formula id="Ch1.E14" content-type="numbered"><mml:math id="M130" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold">G</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi><mml:mi>T</mml:mi></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:msub><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>t</mml:mi><mml:mi>T</mml:mi></mml:msubsup><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi><mml:mi>T</mml:mi></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></disp-formula>
          describes the sensitivity of the solution to the measurement. Note that this
formulation also includes the Tikhonov term, leading to differences for
<inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>≠</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, with the definition given in <xref ref-type="bibr" rid="bib1.bibx35" id="text.22"/>.
The averaging kernel <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">A</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">G</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">K</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (AK)
characterizes the sensitivity of the solution to the true state. The trace of
AK quantifies the degrees of freedom of the signal <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mtext>tr</mml:mtext><mml:mo>(</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (DOFs). This quantity is commonly understood as the
number of individual pieces of information which can be retrieved.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e3530">SCIATRAN settings for the calculation of differential slant column
densities.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.95}[.95]?><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:colspec colnum="6" colname="col6" align="center"/>
     <oasis:colspec colnum="7" colname="col7" align="center"/>
     <oasis:colspec colnum="8" colname="col8" align="center"/>
     <oasis:colspec colnum="9" colname="col9" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Trace gases</oasis:entry>
         <oasis:entry colname="col2">Wavelength (nm)</oasis:entry>
         <oasis:entry colname="col3">Albedo</oasis:entry>
         <oasis:entry colname="col4">SZA (<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col5">RAA (<inline-formula><mml:math id="M135" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col6">LOS (<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">Asymmetry factor</oasis:entry>
         <oasis:entry colname="col8">SSA</oasis:entry>
         <oasis:entry colname="col9">Climatology</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M137" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">477</oasis:entry>
         <oasis:entry colname="col3">0.06</oasis:entry>
         <oasis:entry colname="col4">40</oasis:entry>
         <oasis:entry colname="col5">90</oasis:entry>
         <oasis:entry colname="col6">1, 2, 3, 4, 5, 6, 8, 15, 30</oasis:entry>
         <oasis:entry colname="col7">0.68</oasis:entry>
         <oasis:entry colname="col8">0.92</oasis:entry>
         <oasis:entry colname="col9">US standard</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Retrieval of trace gas concentration profiles</title>
      <p id="d1e3679">Compared to aerosols, the inverse problem for trace gases is easier to solve
because, under the assumption of an optically thin atmosphere, the
relationship between trace gas concentration and measured differential slant
column density is linear. Then, the forward model
<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is equal to a set of measurements <inline-formula><mml:math id="M140" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>,
            <disp-formula id="Ch1.E15" content-type="numbered"><mml:math id="M141" display="block"><mml:mrow><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M142" display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula> includes the error of measurement and forward model.
<inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> depends on the retrieval quantity vector
<inline-formula><mml:math id="M144" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> (trace gas concentration profile) and on an additional parameter
vector <inline-formula><mml:math id="M145" display="inline"><mml:mi mathvariant="bold-italic">b</mml:mi></mml:math></inline-formula>. The latter includes quantities which have an<?pagebreak page6839?> impact on
the measurement and are known with some accuracy (e.g. a priori information).</p>
      <p id="d1e3775">From the perspective of MAX-DOAS, this relationship is strongly ill posed as
the number of retrieval parameters is usually much higher than the number of
measurements. Furthermore, as the light paths of two geometrically close
elevation angles traverse similar vertical layers near the surface,
measurements cannot be considered independent. Consequently, the retrieval
parameter vector <inline-formula><mml:math id="M146" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> is not fully constrained by the input vector
<inline-formula><mml:math id="M147" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>, which introduces the need for additional a priori knowledge which
constrains the solution. With the assumption of a Gaussian error
distribution, the OE method is often used to prevent unstable solutions when
dealing with ill-posed problems.  <xref ref-type="bibr" rid="bib1.bibx35" id="paren.23"/>.

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M148" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mi>g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E16"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtext>or</mml:mtext></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold">KS</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi>T</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mi>g</mml:mi><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            Again, <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the covariance matrices,
<inline-formula><mml:math id="M151" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula> is the measurement and <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the a priori profile.
Equation (<xref ref-type="disp-formula" rid="Ch1.E16"/>) is solved in linear space. Negative values
are possible but can be avoided by applying appropriate a priori constraints.
Note that we introduced a scaling factor <inline-formula><mml:math id="M153" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> which gives the possibility of
regulating the weighting between a priori and measurement information. Here,
the matrix <inline-formula><mml:math id="M154" display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> consists of BAMF values for every layer and measuring
geometry (Eq. <xref ref-type="disp-formula" rid="Ch1.E4"/>) instead of weighting functions. The covariance
matrix of measurements has only diagonal elements, which are the absolute
errors of the spectral DOAS fit of this absorber. <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has constant
variances on its diagonal elements but consists of additional non-diagonal
elements based on a Gaussian distribution, which accounts for a possible
correlation of different profile layers <xref ref-type="bibr" rid="bib1.bibx1" id="paren.24"/>.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Results and discussion</title>
      <p id="d1e4060">In this section, we first present and discuss the results of synthetic
sensitivity studies. For this purpose, noise-free differential slant columns
densities of different aerosol and <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> scenarios were simulated with
SCIATRAN. Subsequently, these data sets were used as input for BOREAS, and
the results are compared with the true profiles. In the next subsection, we
discuss the error sources of the retrieval before; in the last section,
the results of data measured during the CINDI-2 campaign (2nd Cabauw
Intercomparison of Nitrogen Dioxide measuring Instruments, 2016) are shown.
These results are validated by comparison with different ancillary
measurements (sondes, lidar, long-path DOAS, ceilometer, AERONET, Pandora and
in situ).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p id="d1e4077">Parameters for aerosol and <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles used in the
synthetic sensitivity study.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.9}[.9]?><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry namest="col2" nameend="col4" align="center" colsep="1">Exponential profiles  </oasis:entry>
         <oasis:entry namest="col5" nameend="col7" align="center">Box profiles  </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry rowsep="1" namest="col2" nameend="col4" align="center" colsep="1">(SH <inline-formula><mml:math id="M158" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1 km) </oasis:entry>
         <oasis:entry rowsep="1" namest="col5" nameend="col7" align="center">(appendix) </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">E1</oasis:entry>
         <oasis:entry colname="col3">E2</oasis:entry>
         <oasis:entry colname="col4">E3</oasis:entry>
         <oasis:entry colname="col5">B1</oasis:entry>
         <oasis:entry colname="col6">B2</oasis:entry>
         <oasis:entry colname="col7">B3</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">AOT</oasis:entry>
         <oasis:entry colname="col2">0.2</oasis:entry>
         <oasis:entry colname="col3">0.6</oasis:entry>
         <oasis:entry colname="col4">1.0</oasis:entry>
         <oasis:entry colname="col5">0.4</oasis:entry>
         <oasis:entry colname="col6">0.4</oasis:entry>
         <oasis:entry colname="col7">0.4</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">VCD (<inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec cm<inline-formula><mml:math id="M160" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">5</oasis:entry>
         <oasis:entry colname="col3">10</oasis:entry>
         <oasis:entry colname="col4">20</oasis:entry>
         <oasis:entry colname="col5">10</oasis:entry>
         <oasis:entry colname="col6">10</oasis:entry>
         <oasis:entry colname="col7">10</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Maximum altitude (km)</oasis:entry>
         <oasis:entry colname="col2">6</oasis:entry>
         <oasis:entry colname="col3">6</oasis:entry>
         <oasis:entry colname="col4">6</oasis:entry>
         <oasis:entry colname="col5">0.5</oasis:entry>
         <oasis:entry colname="col6">1</oasis:entry>
         <oasis:entry colname="col7">2</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e4270">Exponential aerosol profiles for the synthetic sensitivity study.
Also shown is the a priori profile for the aerosol retrieval (dashed line).</p></caption>
        <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f03.png"/>

      </fig>

<sec id="Ch1.S4.SS1">
  <title>Sensitivity study with synthetic data</title>
      <p id="d1e4285">A synthetic data set of differential slant column densities of <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was created using SCIATRAN's spherical mode including multiple
scattering. The settings in Table <xref ref-type="table" rid="Ch1.T1"/> were chosen to describe
conditions as they can be found in urban areas like the city of Bremen.
Pressure and temperature profiles were taken from a U.S. Standard Atmosphere
<xref ref-type="bibr" rid="bib1.bibx28" id="paren.25"/>. The vertical grid was set to 25 m steps from the
surface up to 6 km, 250 m steps up to 10 km and 1 km steps up to 60 km.
The LOS angles were chosen as a representation of a typical MAX-DOAS
measurement with more angles for the lower elevations, where the sensitivity
is highest. Both the solar zenith angle and relative azimuth angle were kept
constant.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e4317">Retrieval results with a fixed <bold>(a)</bold> and a pre-scaled a priori
profile <bold>(b)</bold> with varying Tikhonov parameters <inline-formula><mml:math id="M163" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> for SNR <inline-formula><mml:math id="M164" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3000.
Small <inline-formula><mml:math id="M165" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values mean less smoothing of the resulting profiles.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f04.png"/>

        </fig>

      <?pagebreak page6840?><p id="d1e4353">The trace gas and aerosol profiles in Table <xref ref-type="table" rid="Ch1.T2"/> (see also
Figs. <xref ref-type="fig" rid="Ch1.F3"/>, <xref ref-type="fig" rid="Ch1.F6"/>, <xref ref-type="fig" rid="App1.Ch1.F1"/>
and <xref ref-type="fig" rid="App1.Ch1.F8"/>) were chosen to assess the BOREAS retrieval capability
under simple (exponential profiles with scale height SH <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> km) and
non-ideal conditions (box profiles, which are not similar to the exponential
a priori profiles). The <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> scenarios did not include aerosols to
avoid the mixture of uncertainties from the trace gas retrieval and
inaccuracies within the aerosol retrieval. The box profiles are shown and
shortly discussed in Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>.</p>
<sec id="Ch1.S4.SS1.SSS1">
  <title>Sensitivity of the aerosol retrieval</title>
      <p id="d1e4395">Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the true exponential extinction coefficient
profiles (see Table <xref ref-type="table" rid="Ch1.T1"/>) with aerosol optical thicknesses of
0.2, 0.6 and 1.0. In addition, an a priori profile is depicted with the same scale height
(SH <inline-formula><mml:math id="M168" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1 km) but with AOT <inline-formula><mml:math id="M169" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.18. In general, an a priori
profile should comprise known information of the true atmosphere. Ancillary
measurements are frequently used to gather information for a mean profile.
Here, we try to evaluate the performance of the algorithm by using an a
priori profile close to the true profile (E1) but also for atmospheres with
highly varying aerosol loads (E2, E3).</p>
      <p id="d1e4416">The retrieval uses vertical grid steps of 50 m for synthetic data because
smaller step widths introduce retrieval noise, whereas larger steps result in
vertical structure being overly smoothed. Since the retrieval tends to
overestimate the upper layers due to missing sensitivity (see
Fig. <xref ref-type="fig" rid="Ch1.F9"/>), a height-dependent a priori variance was used
for the preparation of the a priori covariance matrix <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.
The measurement covariance matrix <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>e</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> consists of a
constant signal-to-noise (SNR) value, which is multiplied with the measurement
for each LOS to get absolute covariances. The Tikhonov parameter is changed
in the first examples to demonstrate the retrieval response to this
parameter. The iterations stop when convergence is reached or after 60 steps.
Convergence in parameter space was set to 0.0001 km<inline-formula><mml:math id="M172" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. In addition,
convergence of the rms of measured and simulated DSOT differences was set to
0.001.</p>
      <p id="d1e4455">On the left side of Fig. <xref ref-type="fig" rid="Ch1.F4"/> the retrieval results for
different Tikhonov parameters <inline-formula><mml:math id="M173" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> are shown. E1, which is close to the a
priori profile (dashed grey line) is retrieved well for all <inline-formula><mml:math id="M174" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values.
In general, smaller Tikhonov parameters give too much weight to the
measurement by reducing smoothing and introducing retrieval noise, which leads
to oscillations. Large values smooth the solution in the direction of the a
priori profile. When the true atmosphere is far away from the a priori
profile, the algorithm does not perform satisfyingly. For E2, strong
smoothing (large <inline-formula><mml:math id="M175" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values) leads to more or less straight lines in
which insufficient curvature can be found, whereas weak (or no) smoothing
means the beginning of oscillations indicated by the reduction of the bottom
extinction. No parameter value is able to retrieve the proper bottom
extinction. This can be found in the same way for E3, where all results show a
clear lack of accuracy. This is not surprising as the a priori profile cannot
be understood as the best guess or median of the atmosphere any more.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p id="d1e4484">True and retrieved AOT for SNR <inline-formula><mml:math id="M176" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3000 and <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula> with and
without a priori pre-scaling, including relative differences to the true
profile in brackets.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">AOT</oasis:entry>
         <oasis:entry colname="col2">True value</oasis:entry>
         <oasis:entry colname="col3">Fixed a priori</oasis:entry>
         <oasis:entry colname="col4">Result</oasis:entry>
         <oasis:entry colname="col5">Scaled a priori</oasis:entry>
         <oasis:entry colname="col6">Result</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">E1</oasis:entry>
         <oasis:entry colname="col2">0.2</oasis:entry>
         <oasis:entry colname="col3">0.18</oasis:entry>
         <oasis:entry colname="col4">0.183 (<inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8.6</mml:mn></mml:mrow></mml:math></inline-formula> %)</oasis:entry>
         <oasis:entry colname="col5">0.161</oasis:entry>
         <oasis:entry colname="col6">0.179 (<inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10.4</mml:mn></mml:mrow></mml:math></inline-formula> %)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">E2</oasis:entry>
         <oasis:entry colname="col2">0.6</oasis:entry>
         <oasis:entry colname="col3">0.18</oasis:entry>
         <oasis:entry colname="col4">0.439 (<inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">26.9</mml:mn></mml:mrow></mml:math></inline-formula> %)</oasis:entry>
         <oasis:entry colname="col5">0.493</oasis:entry>
         <oasis:entry colname="col6">0.535 (<inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10.6</mml:mn></mml:mrow></mml:math></inline-formula> %)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">E3</oasis:entry>
         <oasis:entry colname="col2">1.0</oasis:entry>
         <oasis:entry colname="col3">0.18</oasis:entry>
         <oasis:entry colname="col4">0.626 (<inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">37.4</mml:mn></mml:mrow></mml:math></inline-formula> %)</oasis:entry>
         <oasis:entry colname="col5">0.847</oasis:entry>
         <oasis:entry colname="col6">0.895 (<inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">11.1</mml:mn></mml:mrow></mml:math></inline-formula> %)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e4681">Variation of the relative difference in AOT and bottom extinction
(BOT) compared to the true value as a function of SNR and Tikhonov
parameter, colour coded for scenario E3 with a priori pre-scaling.</p></caption>
            <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f05.png"/>

          </fig>

      <p id="d1e4690">Several authors have already highlighted retrieval problems from MAX-DOAS
measurements under highly variable (in time and space) atmospheric conditions
<xref ref-type="bibr" rid="bib1.bibx45 bib1.bibx46 bib1.bibx48 bib1.bibx10" id="paren.26"><named-content content-type="pre">e.g.</named-content></xref>.
Nevertheless, studies that focus on improvements of the regularization
<xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx13" id="paren.27"/> or a priori
information
<xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx5 bib1.bibx15" id="paren.28"/> are rare
with respect to MAX-DOAS retrievals. Here, we use a priori pre-scaling to
cope with strong deviations of the true atmosphere from the a priori
estimate. For this purpose, the BOREAS aerosol retrieval is started on a
reduced vertical and spectral grid from a zero profile (all a priori
extinction values were set to be zero) as a priori information. In Eq. (15),
the a priori profile <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is set to 0 but the remaining terms stay unchanged
in order to retrieve a reliable AOT value without limiting the solution by a
certain profile shape. Since the retrieval works directly on <inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
absorption, aerosol optical thickness is in general the most<?pagebreak page6841?> reliable
retrieval quantity. The AOT from this pre-calculation is used to scale the a
priori profile for the main run by calculating a scaling factor from the
initial a priori AOT and the new value, which is applied to all initial
extinction coefficients before the main inversion. Note that the only a
priori information used both within the pre-run and within the main run is
the Tikhonov parameter. This method performs well when the a priori shape is
similar to the true atmospheric profile shape (right side of
Fig. <xref ref-type="fig" rid="Ch1.F4"/>). However, no improvement is found when the shape
of the a priori profile deviates strongly from the true atmospheric condition
but no deterioration is found either (see box profiles in Appendix A). On the
right-hand side of Fig. <xref ref-type="fig" rid="Ch1.F4"/>, clear improvements can be
seen in both the overall shape and bottom extinction. Nevertheless, the profiles
tend to deviate more strongly at the surface, especially when the aerosol load is
higher, which was also found by <xref ref-type="bibr" rid="bib1.bibx9" id="text.29"/>. The relative
differences in retrieved AOT are high for the unscaled retrieval but can be
significantly reduced with a priori pre-scaling (see
Table <xref ref-type="table" rid="Ch1.T3"/>). Further improvements could be made by
increasing the allowed number of iterations together with stronger
convergence criteria (not shown), but the average retrieval time would
increase as well.</p>
      <p id="d1e4736">A comparison of all three profiles and their optimal <inline-formula><mml:math id="M186" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> ranges with and
without pre-scaling indicates that each combination of a priori and true
profile has a specific optimal Tikhonov parameter which might differ strongly
between each scenario. In addition, the SNR is another quantity
which has a large impact on the retrieval. In general, SNR values might
differ strongly throughout a day, because dynamic ranges of exposure and
integration times are frequently used to operate the CCD in the ideal
saturation range when the number of photons might differ strongly (e.g. due
to different viewing geometries). In Fig. <xref ref-type="fig" rid="Ch1.F5"/> we varied SNR
(as a representation of the measurement error) and the Tikhonov parameter
<inline-formula><mml:math id="M187" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> from 500 to 5000 and from 0.25 to 30 respectively to find the best
parameter range for the optimization of AOT and the bottom extinction (BOT).
The figure shows results for the strong aerosol scenario E3 (E1, E2 and the
box scenarios are shown in the appendix). The relative
differences to the true value are colour coded with bright spots, indicating better retrievals.</p>
      <p id="d1e4755">For scenario E3, high <inline-formula><mml:math id="M188" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> (or low SNR) values apply too much smoothing
(not enough weight on the measurement), which ends in strong AOT <inline-formula><mml:math id="M189" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> BOT
underestimations of the retrieval results. Furthermore, there is an ideal
range of SNR values for <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> where the AOT relative difference is
<inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> %. In this specific SNR <inline-formula><mml:math id="M192" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M193" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> range, the bottom values
do not show the best results. On the other hand, BOT values are optimized for
<inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>≤</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> for SNR <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2500</mml:mn></mml:mrow></mml:math></inline-formula> and SNR <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3000</mml:mn></mml:mrow></mml:math></inline-formula> where the AOT
does not have the lowest difference. As a consequence, due to unequal
vertical sensitivity, the choice of a priori constraints and parameterization, in
some cases<?pagebreak page6842?> either AOT or the shape of the profile can be optimized. Stable
solutions for the optimization of both profile characteristics could not be
identified in the range of parameterization, regularization and convergence.
As a result, a reasonable compromise for optimum values with respect to both
AOT and BOT would be in the range SNR <inline-formula><mml:math id="M197" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2000–3000 with low Tikhonov
values <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>≤</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula>. Note that the SNR range between 3500 and 4000
has larger relative deviations than the surrounding settings which could not
be found for other scenarios. This is assumed to be either a unique solution,
where the range of settings leads to poor retrieval results, or a numerical
instability.</p>
      <p id="d1e4868">In contrast to this pragmatic approach, the so-called <inline-formula><mml:math id="M199" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula>-curve approach
<xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx7" id="paren.30"/> was found to be insufficient as
it already assumes good regularization; i.e. the data residual and the
parameter norm (<inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:mfenced close="∥" open="∥"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>) can be
described well by a specific regularization parameter
<xref ref-type="bibr" rid="bib1.bibx13" id="paren.31"/>, which was not found for the application of
MAX-DOAS profiling.</p>
</sec>
<sec id="Ch1.S4.SS1.SSS2">
  <title>Sensitivity of the trace gas retrieval</title>
      <p id="d1e4908">The optimal-estimation-based trace gas profile retrieval faces similar
problems to the regularization difficulties discussed for the aerosol
retrieval in the previous section. In many studies, an a priori variance of a
fixed percentage of the a priori profile is used in combination with the differential
slant column density errors from the DOAS fit to constrain the
solution <xref ref-type="bibr" rid="bib1.bibx10" id="paren.32"><named-content content-type="pre">e.g.</named-content></xref>. Here, we show that this
is an insufficient approach, since the fitting errors might be too small,
giving too much weight to the measurement when the <inline-formula><mml:math id="M201" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration
is high and the a priori profile is not a good estimate of the true
atmosphere.</p>
      <p id="d1e4927">Again, a priori pre-scaling is used to achieve a better estimate of the true
atmospheric conditions. In contrast to the aerosol retrieval, which needed a
pre-run for a better first guess, the trace gas a priori pre-scaling is
achieved using the 30<inline-formula><mml:math id="M202" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> elevation angle measurement. In the geometric
approximation (see Eq. <xref ref-type="disp-formula" rid="Ch1.E3"/>), the differential AMF is 1, which
leads to <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>S</mml:mi><mml:mn mathvariant="normal">30</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mi>V</mml:mi></mml:mrow></mml:math></inline-formula>. This vertical column density <inline-formula><mml:math id="M204" display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula> is used as a
pre-scaling value for the a priori profile.</p>
      <p id="d1e4965">The different <inline-formula><mml:math id="M205" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> exponential profiles, based on the parameters in
Table <xref ref-type="table" rid="Ch1.T2"/>, are shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/> together
with the a priori profile (box profiles can be found in
Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>). Note that we used an a priori profile close to
E2. These profiles are a good representation of the daily variability in an
urban region, where high <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are found during phases
of commuter traffic (rush hours) in the morning and late afternoon and low
<inline-formula><mml:math id="M207" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> loads are found in between.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p id="d1e5010">Exponential <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles for the synthetic sensitivity
study. Also shown is the a priori profile for the aerosol retrieval (dashed
line).</p></caption>
            <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f06.png"/>

          </fig>

      <p id="d1e5031">Figure <xref ref-type="fig" rid="Ch1.F7"/> depicts the profiling results without a priori
pre-scaling on the left side and with pre-scaling on the right side.
Different regularization ratios are achieved by varying parameter <inline-formula><mml:math id="M209" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> in
Eq. (<xref ref-type="disp-formula" rid="Ch1.E16"/>), which varies the measurement error by <inline-formula><mml:math id="M210" display="inline"><mml:msqrt><mml:mi>g</mml:mi></mml:msqrt></mml:math></inline-formula>. The
retrieval is done on the same vertical grid as in the previous section with
similar variances for the a priori covariance matrix. In contrast to a
constant SNR, we use variances in the range of typical DOAS
fit errors of <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> for the measurement covariance matrix, which can be
understood as the standard approach of the MAX-DOAS profiling community. For
small elevation angles and high <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations, the relative
<inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> error is often lower than 1 % and sometimes even lower than
0.3 %, indicating a high reliability in the measurement but neglecting
errors due to pointing inaccuracies of the telescope or horizontal
inhomogeneities which affect the profiling result but not the measurement.</p>
      <p id="d1e5086">The results again show the importance of pre-scaling. Whereas the E2 scenario
is well retrieved for all <inline-formula><mml:math id="M214" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> ranges without pre-scaling, the other scenarios
tend to oscillate or underestimate the profile. Note that the standard
regularization ratio (<inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:mi>g</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>) does not lead to satisfying results for E3.
Applying pre-scaling leads to more accurate profiles, especially for E3.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e5110">Retrieval results with a fixed <bold>(a)</bold> and a pre-scaled a priori
profile <bold>(b)</bold> with <inline-formula><mml:math id="M216" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> factors. Small <inline-formula><mml:math id="M217" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> values mean less measurement
weighting for the resulting profiles.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f07.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e5141">Retrieval errors for E1–E3 of the synthetic aerosol <bold>(a)</bold>
and <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> study <bold>(b)</bold>. Aerosol results are shown for
SNR <inline-formula><mml:math id="M219" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3000 and Tikhonov parameter <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>. Trace gas errors are
depicted without additional regularization (<inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:mi>g</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>). Pre-scaling was used.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f08.png"/>

          </fig>

      <p id="d1e5199">The specific optimal <inline-formula><mml:math id="M222" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> range for each scenario depends not only on the a
priori profile and the true atmosphere but also on the variance values, their
height dependencies and the definition of off-diagonal elements. However, the
quantification of this optimal range is a difficult task for real data due to
the lack of knowledge about the true atmosphere. Manual variations of <inline-formula><mml:math id="M223" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> as
well as iterative approaches are conceivable. Possible criteria for finding
the best <inline-formula><mml:math id="M224" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> values are, for example, the rms between measurement and retrieval
quantity or ancillary measurements. Here, we used fixed values which were
chosen to decrease oscillations while maintaining the best surface
concentration.</p>
</sec>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Discussion of error sources and information content</title>
      <?pagebreak page6843?><p id="d1e5230">The total error of both aerosol and trace gas retrieval can be separated into
three different error sources <xref ref-type="bibr" rid="bib1.bibx35" id="paren.33"/>.

                <disp-formula id="Ch1.E17" content-type="numbered"><mml:math id="M225" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>tot</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>sm</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>fw</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>ns</mml:mtext></mml:msub></mml:mrow></mml:math></disp-formula>

          The first error term describes the smoothing error <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>sm</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">I</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">I</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>
which can be understood as error for the averaging kernel smoothed estimate
of the true state of the atmosphere. <inline-formula><mml:math id="M227" display="inline"><mml:mi mathvariant="bold">A</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M228" display="inline"><mml:mi mathvariant="bold">I</mml:mi></mml:math></inline-formula> are the
averaging kernel and identity matrix respectively. The second term of
<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>tot</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the forward model error <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>fw</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>,
which is hard to quantify in real retrievals, because it needs the true state
of the atmosphere. For near-linear problems, this error source can be
neglected, when the forward model parameters are well estimated. The last
error is called the retrieval noise <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>ns</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">GS</mml:mi><mml:mtext>e</mml:mtext></mml:msub><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M232" display="inline"><mml:mi mathvariant="bold">G</mml:mi></mml:math></inline-formula>: gain matrix; see
e.g. Eq. <xref ref-type="disp-formula" rid="Ch1.E14"/>) and denotes the uncertainty of the retrieved profile
due to measurement errors.</p>
      <p id="d1e5380">Figure <xref ref-type="fig" rid="Ch1.F8"/> shows smoothing, retrieval and total error for
the above-mentioned scenarios of the aerosol retrieval (left) and the trace
gas retrieval (right).</p>
      <?pagebreak page6844?><p id="d1e5385">The total errors for both aerosol and trace gas retrieval are dominated by
the smoothing error with negligibly small retrieval noise. This shows that
the measurement itself can be considered a small error source in contrast
to the generally limited information content of MAX-DOAS measurements. Note
that the error components of the <inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile show small oscillations,
which also indicates that larger constraints are needed. For the aerosol
retrieval, the largest errors can be found at an altitude at which the
sensitivity is low, with an additional increase near the surface. The errors
are nearly zero for higher altitudes because of the height-dependent
variances, which were chosen in order to reduce possible retrieval
instabilities in altitude regimes where the sensitivity is lowest. In
general, <inline-formula><mml:math id="M234" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> also shows larger errors for higher altitudes but the
surface error is dominant here, indicating a reduced sensitivity or poor
parameterization. The errors for <inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> km are close to zero because the
smallest a priori covariance is used as a boundary condition for the highest
altitudes, where the sensitivity is low.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p id="d1e5424">Averaging kernels of the aerosol retrievals for scenarios E1–E3
(first three figures on the left side). Also shown are the area and FWHM of
the AK on the right side. FWHM values are depicted on their nominal heights
(coloured) and on the height of their individual peaks (black).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f09.png"/>

        </fig>

      <p id="d1e5434">For the quantification of the vertical sensitivity of the retrieval,
Fig. <xref ref-type="fig" rid="Ch1.F9"/> shows the averaging kernels AK (see
Eq. <xref ref-type="disp-formula" rid="Ch1.E14"/> and text) for the aerosol scenarios E1–E3 calculated for a
Tikhonov parameter <inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn></mml:mrow></mml:math></inline-formula> and SNR <inline-formula><mml:math id="M237" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3000. We used a small
<inline-formula><mml:math id="M238" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> to demonstrate the general vertical sensitivity rather than the
smoothed one. Larger <inline-formula><mml:math id="M239" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values would lead to peaks at lower altitudes
with slightly reduced peak sizes. Within an ideal retrieval, the AK matrix
should be equal to the identity matrix <xref ref-type="bibr" rid="bib1.bibx35" id="paren.34"/>. Then,
delta peaks in every layer would indicate a perfect sensitivity of the
retrieval to the true state of the atmosphere. For MAX-DOAS retrievals, AK
are much broader, with peaks close to the surface. Here, the sensitivity is
highest and the kernels for a certain layer show correlations with
neighbouring layers due to the finite width of each kernel. The comparison of
AK for E1–E3 reveals that, besides the surface kernel, all peaks are reduced
in size and width for higher aerosol loads. This demonstrates the smaller
sensitivity due to both an insufficient a priori estimate and the additional
aerosol load, which reduces the general number of photons scattered into the
light path (for specific geometries, e.g. RAA <inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">90</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M241" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>). The area of
the AK should ideally be 1 over a large range of altitudes. Here, we find
that only within the first kilometre is the overall sensitivity high. Note
that, especially for E2 and E3, the surface area value is much smaller than 1
due to the negative area of the lowermost kernels for higher altitudes.
Negative kernel values indicate that an additional aerosol load in this
altitude would decrease the retrieved solution close to the surface. The
full width at half maximum (FWHM)
of averaging kernels are a measure of the vertical retrieval resolution with
the lowest values close to the surface. In the right-hand-side plot of
Fig. <xref ref-type="fig" rid="Ch1.F9"/> we show FWHM at the nominal altitudes (coloured
lines) and the altitudes of their individual maxima (black lines). The
calculation was done by using the individual AK instead of the FWHM of fitted
Gaussian distributions. The limited vertical extent of the black curves
indicate that a theoretical vertical resolution with values between 500 m
and 1 km is available for all kernel levels, but the specific sensitivity
for all layers lies within the lowest kilometre.</p>
      <p id="d1e5498">The trace of the averaging kernel matrix (degrees of freedom,
DOFs) is often discussed as if it
is the number of independent pieces of information for a retrieval.
<xref ref-type="bibr" rid="bib1.bibx13" id="text.35"/> already pointed out that this number is not
necessarily a strict limitation of the retrieval and might differ strongly
depending on the regularization.</p>
      <p id="d1e5504">In Fig. <xref ref-type="fig" rid="Ch1.F10"/>, we depicted the rms between measured and
retrieved <inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> and the DOFs for scenario E3. Giving the retrieval more freedom will increase
the degrees of freedom and decrease the rms, which might be understood as
more information is used for a better measurement assimilation. However, in
Sect. <xref ref-type="sec" rid="Ch1.S4.SS3.SSS1"/>, we already demonstrated that profiles with high
DOFs and low rms might oscillate.
DOFs only state the maximum number
of independent pieces of information for the current regularization
parameters without considering if the retrieved profiles are optimal.
Therefore, we do not use this quantity for the description of retrieval
results.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e5534">Rms between measured and simulated <inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> and the
matching degrees of freedom (DOFs)
for the specific retrievals for different SNR and <inline-formula><mml:math id="M246" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values.</p></caption>
          <?xmltex \igopts{width=472.315748pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f10.png"/>

        </fig>

      <p id="d1e5571">In Fig. <xref ref-type="fig" rid="Ch1.F11"/>, we show the averaging kernel, area and FWHM
of the <inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval for scenarios E1–E3. Similar conclusions can be
drawn as for the aerosol retrieval for the shape and altitude variation of
AK. The area is closer to 1 for all altitudes, which is due to the missing
smoothing of the Tikhonov term. The FWHM again shows a lower vertical
sensitivity for higher layers. On the other hand, the FWHM curves at their
specific peak heights (black) show a larger vertical spread in comparison to
the aerosol curves, which indicates a larger sensitivity for higher altitudes
in the <inline-formula><mml:math id="M248" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval. The DOFs for the trace gas retrieval lie in the range between 2.3 and 3.2
but decrease significantly when applying values of <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:mi>g</mml:mi><mml:mo>≠</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p id="d1e5613">Averaging kernels of the <inline-formula><mml:math id="M250" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals for scenarios E1–E3
(first three figures on the left side). Also shown are the area and FWHM of
the AK on the right side. FWHM values are depicted at their nominal heights
(coloured) and at the heights of their individual peaks (black).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f11.png"/>

        </fig>

      <p id="d1e5633">In addition to the above mentioned errors and resolution properties, further
error sources and problems should be noted. For real measurements, the true
meteorological conditions are mostly unknown. <xref ref-type="bibr" rid="bib1.bibx49" id="text.36"/>
pointed out that wrong <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles might lead to strong deviations
between retrieved and true aerosol profiles. Furthermore, we did not implement
the instruments field of view (FOV) in the retrieval because it will increase
run time. However, larger differences can be expected for
concentrations and extinctions in the lowermost layers, when parts of the FOV
might gather photons reflected on the Earth's surface. Additionally, we assume a
linearity between measurement and concentration, which might be inaccurate for
high aerosol loads and <inline-formula><mml:math id="M252" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations when the telescope points
to the horizon.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Retrieval of profiles during the CINDI-2 campaign</title>
      <p id="d1e5667">The 2nd Cabauw Intercomparison of Nitrogen Dioxide Measuring Instruments
campaign (CINDI-2) took place in Cabauw (the Netherlands) from
25 August to 7 October 2016 and was funded by the European Space Agency (ESA)
and the participating research groups. The campaign goals were the
characterization of differences between <inline-formula><mml:math id="M253" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements by various
instruments and approaches, and the evaluation of the resulting data sets for
the validation of the Copernicus satellite, Sentinel 5 Precursor (S5P). Over
40 different instruments operated by 30 groups from all over the world
provided an outstanding ensemble of data sets for this task. The campaign was
a successor of CINDI, which was held in Cabauw from 16 to 24 June 2009
<xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx30 bib1.bibx52" id="paren.37"><named-content content-type="pre">see
e.g.</named-content></xref>.</p>
      <p id="d1e5686">The measurement site Cabauw is located in a rural region dominated by
agriculture but is surrounded by four of the largest cities in the
Netherlands (Rotterdam, Amsterdam, Den Haag and Utrecht). Thus, depending on
the wind direction, long-range transport from highly industrialized areas<?pagebreak page6845?> is
likely, which results in high-pollution events. Here, 3 of the 5
investigated days show a more or less steady wind from south-easterly
directions, with a change in wind direction in the evening of 15 September
(see Fig. <xref ref-type="fig" rid="Ch1.F12"/>). On 23 September, the wind came from the west, whereas
1 day later the wind came mostly from southerly directions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><caption><p id="d1e5693">Wind speed and direction for the investigated days
<xref ref-type="bibr" rid="bib1.bibx4" id="paren.38"/> resampled to 5 min values from 06:00 to
17:00 UTC.</p></caption>
          <?xmltex \igopts{width=213.395669pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f12.png"/>

        </fig>

      <p id="d1e5705">In this study, the instrumental set-up for the validation of aerosol and
trace gas profiles consists of in situ and remote-sensing instruments.
Near-surface concentration and extinction values are provided by a ceilometer,
<inline-formula><mml:math id="M254" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar, long-path DOAS (LP DOAS) and in situ samplers (ICAD, CAPS,
NAQMN). Integrated values are provided by Pandora and AERONET direct Sun
instruments. Besides the MAX-DOAS measurements, the only routinely retrieved
profiling information comes from ceilometer and <inline-formula><mml:math id="M255" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar data. In
addition, three <inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sondes were launched on one of the days
investigated here (15 September 2016).</p>
      <p id="d1e5742">The profile validation is realized on 2 cloud-free days
(13–14 September 2016) and 3 days with broken clouds (15 September and
23–24 September 2016). The operators of MAX-DOAS instruments were asked to
perform elevation scans at the beginning of each hour and at 11:15 and
11:45 UTC every day. The ancillary measurements introduced in the following
subsections were resampled or averaged in this time interval to prevent
discrepancies due to time lags between two observations. Each scan took
around 8 min and consisted of the following elevation angles: 1,
2, 3, 4, 5, 6, 8, 15 and 30<inline-formula><mml:math id="M257" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. The telescope pointed towards the westerly direction
with a viewing azimuth angle of 107<inline-formula><mml:math id="M258" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> from the south.</p>
      <p id="d1e5763">In this section, BOREAS retrievals were performed on data from the IUPB
MAX-DOAS instrument on a 100 m step width vertical grid from the surface up
to 4 km. The aerosol retrieval uses the a priori pre-scaling option with an
exponential a priori profile described by a 1 km scale height and an<?pagebreak page6846?> aerosol
optical thickness of 0.18. The asymmetry factor and single-scattering albedo were
chosen to be 0.92 and 0.68 respectively. The SNR was set to 2500 with a
Tikhonov parameter of 2. The a priori variance decreased with altitude
from 1.5 at the surface to 0.01 at 4 km. This definition was chosen to
improve the profiling results for lower altitudes, where the main aerosol
load/concentration can be expected, and in order to suppress instabilities at
the upper grid boundary, where the sensitivity is lowest. The trace gas
retrieval again uses a priori pre-scaling with an exponentially decreasing
profile with a scale height of 1 km and a vertical column density of
<inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:mn mathvariant="normal">9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molecules cm<inline-formula><mml:math id="M260" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The a priori covariance matrix uses
the same variances as the aerosol retrieval but includes Gaussian distributed
side diagonal elements to account for correlations between individual layers
<xref ref-type="bibr" rid="bib1.bibx1" id="paren.39"/>. The measurement covariance matrix for
<inline-formula><mml:math id="M261" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> consists of the total differential slant column error on the
diagonal elements only. Vertical profiles of pressure and temperature were
created by taking the mean of 16 different sonde measurements taken during
the years 2013–2015 in De Bilt (the Netherlands).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><caption><p id="d1e5809"><bold>(a)</bold> Time series of AERONET (blue) and BOREAS AOT (red).
Small triangles show the original AERONET measurement, small dots with
connecting lines depict the resampled data. Grey areas indicate clouds.
<bold>(b)</bold> Scatter plot of both data sets including parameters of the
orthogonal regression and Pearson's correlation coefficient.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f13.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><caption><p id="d1e5825"><bold>(a)</bold> Time series of BOREAS (red), ceilometer (green) and
NAQMN in situ (blue) and near-surface aerosol parameters. Small triangles
show the original hourly NAQMN measurements; small dots with connecting lines
depict the resampled data. Green squares show ceilometer near-surface
extinction values evaluated by averaging the 10–50 m coefficients. Grey
areas indicate clouds. <bold>(b)</bold> Scatter plot including parameters of the
orthogonal regression and Pearson's correlation coefficients.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f14.png"/>

        </fig>

<sec id="Ch1.S4.SS3.SSS1">
  <title>Validation of aerosol retrievals</title>
</sec>
<sec id="Ch1.S4.SS3.SSSx1" specific-use="unnumbered">
  <title>Instrumentation for the aerosol validation</title>
      <p id="d1e5851">Aerosol profiles were validated using three different instruments. The
retrieved AOT was compared with values from an AERONET station (AErosol
RObotic NETwork,
<xref ref-type="bibr" rid="bib1.bibx6 bib1.bibx18" id="altparen.40"/>). The level 2
AOT at 440 nm was scaled with the Angström exponent from the ratio
440 nm/675 nm to calculate the AOT at 477 nm (see
Fig. <xref ref-type="fig" rid="Ch1.F13"/>). Due to measurement intervals varying between 4
and 30 min, we decided to resample the AERONET signal. The errors from
AERONET instruments are usually in the range of 0.01 (VIS, IR) to 0.02 (UV)
<xref ref-type="bibr" rid="bib1.bibx39" id="paren.41"/>. Here, we used a constant error of 0.01.</p>
      <p id="d1e5862">The bottom extinction coefficient of the retrieved aerosol profiles was
compared with in situ PM<inline-formula><mml:math id="M262" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> concentrations from the National Air Quality
Monitoring Network (NAQMN) operated by the Dutch National Institute for
Public Health and the Environment (RIVM). The NAQMN measurement site
Wielsekade is located at a distance of around 900 m from the MAX-DOAS
station. The site is listed as a regional background station and the
PM<inline-formula><mml:math id="M263" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> measurement principle is beta attenuation (Thermo Fisher Scientific
FH62I-R). The instrument provides data on 1 min intervals but only the
hourly values are validated by RIVM. These hourly values were resampled on
the MAX-DOAS times and the minute values were used to calculate the errors as
standard deviation for the data points shown (see
Fig. <xref ref-type="fig" rid="Ch1.F14"/>).</p>
      <p id="d1e5885">Furthermore, we used AERONET-scaled ceilometer near-surface extinction as a
further validation data set. The ceilometer (CHM15k Nimbus) was operated by
the Royal<?pagebreak page6847?> Netherlands Meteorological Institute (KNMI) and sampled
backscattering signals every hour at a wavelength of 1064 nm. The integrated
backscattering signal was divided by the 1020 nm AERONET AOD to get a
conversion factor which was applied to the backscattering signal for the
conversion into extinction coefficients. This new ceilometer profile was
again scaled with AERONET AOT at 477 nm. The error is expressed as the
standard deviation calculated from the temporal and vertical averaging.</p>
</sec>
<sec id="Ch1.S4.SS3.SSSx2" specific-use="unnumbered">
  <title>Comparison of aerosol retrieval parameters</title>
      <p id="d1e5894">Figure <xref ref-type="fig" rid="Ch1.F13"/> shows the time series and the scatter plot of
AERONET- and BOREAS-derived AOT. The BOREAS data were filtered for profiles
which reached the iteration limit during the retrieval. Grey areas indicate
clouds within the specified time period.</p>
      <p id="d1e5899">In the scatter plot, BOREAS error bars were calculated by integrating the
total error (Eq. <xref ref-type="disp-formula" rid="Ch1.E17"/>) vertically. On the first 2 cloud-free
days, the temporal variability shows a similar pattern with a slight offset
between the instruments, most likely introduced by an underestimation of the
AOT by BOREAS. Due to the limited sensitivity of MAX-DOAS profiling for
higher altitudes (see Fig. <xref ref-type="fig" rid="Ch1.F9"/>), elevated aerosols do
not contribute to BOREAS AOT but can be measured by direct Sun instruments
like AERONET Sun photometers.</p>
      <p id="d1e5906">In the evening, the results of both instruments vary more. Different reasons
for this finding are possible. First, a developing planetary boundary layer
(PBL) might exceed the vertical extension where BOREAS has sufficient
sensitivity. Second, when pointing towards the Sun, saturation of the CCD
becomes a problem, leading to low integration times, which decrease SNR and
fitting quality. In addition, RTM calculations might introduce uncertainties
at high SZA, when the aerosol load is high and the light path is strongly
increased. Furthermore, the aerosol phase function used leads to
uncertainties, as the forward scattering peak might be underestimated by the
Henyey–Greenstein parameterization. The other days show a higher variability
due to an increase in cloudy scenes. Note that, especially in the morning and
around noon, clouds may influence the instruments in various ways because of
their different azimuthal viewing directions. The BOREAS profile retrieval
cannot be considered reliable when one or several elevation angles point at
clouds during the measurements, as intensity and light path vary in
unpredictable ways. This might also lead to large iteration numbers<?pagebreak page6848?> or to no
convergence at all. On 15 September, the temporal patterns of the two
instruments differ strongly. Although the extinction values around noon agree
well, AERONET's AOT decrease before and the
increase afterwards cannot be found this strongly by BOREAS. Especially in
the evening, both curves deviate, indicating highly variable atmospheric
conditions, which might also be introduced by a change in wind direction (see
Fig. <xref ref-type="fig" rid="Ch1.F12"/>). The aerosol load on the last 2 days is much lower
because of rainfall in the time between 16 and 22 September. In the morning
of 23 September, several profiles were discarded due to exceeded iteration
limits.</p>
      <p id="d1e5911">The correlation coefficient of 0.83 is high and shows the general good
agreement on 3 of 5 days. The regression line indicates the above-mentioned small underestimation of the AOT by BOREAS.</p>
      <p id="d1e5915">Figure <xref ref-type="fig" rid="Ch1.F14"/> shows the comparison of near-surface aerosol
values. Extinction coefficients from BOREAS and the ceilometer are depicted
together with PM<inline-formula><mml:math id="M264" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> concentrations of the NAQMN in situ instrument. Note
that the <inline-formula><mml:math id="M265" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis for PM<inline-formula><mml:math id="M266" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> concentrations was chosen to match the
results of BOREAS on 14 September. The NAQMN in situ sampler and BOREAS
show a good temporal agreement within the first 3 days. Only in the
morning hours of the 13 and 15 September, do data from the two instruments show
a larger spread. This deviation is most likely due to the insufficient
vertical resolution of MAX-DOAS profile retrievals when the PBL has not yet
evolved and near-surface aerosol loads are dominant (see
Figs. <xref ref-type="fig" rid="Ch1.F9"/> and <xref ref-type="fig" rid="Ch1.F15"/> for further details). On
15 September, early morning clouds might also have an impact on the
deviation. Again, a larger variability for BOREAS results can be found for
the last 2 days, when the retrieval was influenced by broken clouds. The in
situ instruments show a smoother daily variation here. The ceilometer bottom
extinction shows a good agreement with BOREAS and NAQMN on the first day and
an underestimation on the second day. On 15 September, bottom values are
influenced by thick clouds which might interfere with the backscattering
signal of altitude ranges below the clouds (see
Fig. <xref ref-type="fig" rid="Ch1.F16"/>). The day 23 September shows more variability than the
first 2 days but this can be found for the other instruments as well.</p>
      <p id="d1e5952">The correlation of BOREAS bottom extinctions with data from both validation
instruments is high, indicating good agreement on cloud-free days. The
correlation with ceilometer near-surface values is high as well but the
regression line shows a general underestimation of ceilometer near-surface
values in comparison to BOREAS.</p>
      <p id="d1e5955">Figure <xref ref-type="fig" rid="Ch1.F15"/> shows the aerosol layer height found by the ceilometer
for all days. Especially during the first 3 days, an upward-extending PBL
can be identified from noon to the late afternoon. Only on 15 September, does a
more or less stable residual PBL seems to exist in the morning hours. The
other days show high variability in the morning with layer heights from 200
to 600 m with more or less individual high signals, which might be produced
by smaller clouds at higher altitudes: 24 September shows a stable layer
around 200 m and a diffuse developing PBL in the afternoon.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><caption><p id="d1e5962">Ceilometer aerosol layer height within the planetary boundary
layer.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f15.png"/>

          </fig>

      <p id="d1e5971">The underlying extinction coefficient profiles for the above-discussed bottom
extinction and AOT values can be seen in Fig. <xref ref-type="fig" rid="Ch1.F16"/>. In
the top row, temporal and vertically averaged ceilometer profiles are
depicted. In the middle row, these data were smoothed to the MAX-DOAS vertical
resolution by the application of BOREAS averaging kernels
(<inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>new</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>apri</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>ceilo</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>apri</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>); see <xref ref-type="bibr" rid="bib1.bibx36" id="altparen.42"/>). The
first day shows a good agreement between BOREAS and ceilometer near-surface
extinction with a small offset between the curves. In the morning, both
instruments find the aerosol load mainly located in the lowermost layers.
Beginning around noon, the PBL starts developing with a maximum height of
2 km in the afternoon found by the ceilometer. BOREAS cannot resolve this
increasing PBL as well as the averaged ceilometer but the AK smoothed data
indicate that the reason might be limited sensitivity to the top boundary
of the PBL.</p>
      <p id="d1e6016">On 15 September, the averaged ceilometer data show high and thick clouds in
the morning and a rising PBL in the afternoon. In the AK-smoothed data, these
clouds cannot be identified any more. BOREAS introduces elevated aerosol
layers which can be understood as a retrieval artefact due to these cloudy
scenes. In the afternoon, BOREAS finds an upward expansion in the PBL similar
to the ceilometer, with the exception of the last profile, which was influenced
by the telescope pointing towards the Sun. BOREAS extinction values are
smaller in the PBL, which is a consequence of the already explained
underestimation of BOREAS AOT to AERONETs AOT, which was used for the
backscatter signal scaling.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16" specific-use="star"><caption><p id="d1e6021">Comparison of aerosol extinction coefficient profiles from BOREAS
and ceilometer for 13 September 2016 <bold>(a)</bold> and
15 September 2016 <bold>(b)</bold>.</p></caption>
            <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f16.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS3.SSS2">
  <title>Validation of nitrogen dioxide profiles</title>
</sec>
<sec id="Ch1.S4.SS3.SSSx3" specific-use="unnumbered">
  <?xmltex \opttitle{Instrumentation for the {$\protect\chem{NO_{2}}$} validation}?><title>Instrumentation for the <inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> validation</title>
      <p id="d1e6060">Several instruments were used for the validation of BOREAS nitrogen dioxide
profiling results. The VCD results were<?pagebreak page6849?> validated with the
help of a Pandora instrument (no. 128) operated by LuftBlick
<xref ref-type="bibr" rid="bib1.bibx17" id="paren.43"/> and a <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar from RIVM. In addition, three
<inline-formula><mml:math id="M270" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sondes launched on 15 September by KNMI were also used.</p>
      <p id="d1e6088">The Pandora instrument was used with its direct Sun capability to retrieve
total nitrogen dioxide columns on hourly time steps (see
Fig. <xref ref-type="fig" rid="Ch1.F17"/>). Since the measurement time did not match to
BOREAS scans, Pandora values were resampled. The stratospheric column was
subtracted based on the approach of <xref ref-type="bibr" rid="bib1.bibx23" id="text.44"/> by using
OMI stratospheric columns during the Cabauw overpass (L2 OVP,
<xref ref-type="bibr" rid="bib1.bibx29" id="altparen.45"/>). The data were quality filtered and the errors were
provided by LuftBlick and are based on <xref ref-type="bibr" rid="bib1.bibx17" id="text.46"/>.</p>
      <p id="d1e6102">The <inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar <xref ref-type="bibr" rid="bib1.bibx3" id="paren.47"/> did not measure as frequently
as Pandora and MAX-DOAS instruments but performed several measurements on
15 September. One lidar scan took approximately 30 min with the
temporal midpoints of the scans on a non-regular temporal grid which
necessitated resampling. The scan was done on different elevation angles
which enabled the retrieval of vertical profiles with altitude points up to
2.5 km. For the VCD calculation, these profiles were vertically integrated.
Errors were provided by the RIVM team and Gaussian error propagation was
applied for the calculation of VCD errors. In addition to the remote-sensing
instrument, <inline-formula><mml:math id="M272" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sondes were launched on 15 September around
05:15, 08:04 and 10:25 UTC. The sondes provide <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VMR as well as
pressure, temperature and altitude data for the conversion to concentrations,
which were vertically integrated up to 4 km.</p>
      <p id="d1e6141">Near-surface concentration validation was done with the help of in situ
(NAQMN, ICAD, CAPS) and remote-sensing instruments (lidar and LP DOAS). The
in situ samplers NAQMN, CAPS and ICAD were operated by RIVM, the Royal
Belgian Institute for Space Aeronomy (BIRA-IASB) and the Institute of
Environmental Physics in Heidelberg (IUPH) respectively. In addition to the
aerosol bottom concentration, NAQMN also provided <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations
(Teledyne API 200E; see Sect. <xref ref-type="sec" rid="Ch1.S4.SS3.SSS1"/> for details on data
handling). IUPH and BIRA-IASB created a common <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in situ data set
from IUPHs ICAD (Iterative CAvity DOAS, <xref ref-type="bibr" rid="bib1.bibx34" id="altparen.48"/>) and BIRAs
CAPS (Environment SA, AS32M-CAPS, Cavity Attenuated Phase Shift,
<xref ref-type="bibr" rid="bib1.bibx22" id="altparen.49"/>). This joint data set filled gaps in the
individual measurement series and fixed a scaling issue for CAPS. BIRA-IASB
operated two different CAPS instruments, which were installed at the 27 and
200 m levels of the Cabauw measurement tower. The joint
ICAD/CAPS data set as well as the
200 m CAPS data were averaged over 15 min time steps. For both instruments
(ICAD/CAPS) an error of 1 ppb was
assumed.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F17" specific-use="star"><caption><p id="d1e6177"><bold>(a)</bold> Time series of Pandora, lidar and BOREAS <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
VCD. Blue diamonds show the original Pandora measurements and green squares
show the lidar data points. Small dots with connecting lines depict the
resampled data sets of Pandora and lidar. BOREAS is shown as red circles.
Grey areas indicate clouds. The plot includes orange triangles as a
representation of the integrated <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sondes measurements with the
ascent and descent separated into different triangles with the edge at the
top or bottom respectively. <bold>(b)</bold> Scatter plot of the data sets
including parameters of the orthogonal regression and Pearson's correlation
coefficients.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f17.png"/>

          </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F18" specific-use="star"><caption><p id="d1e6215"><bold>(a)</bold> Time series of in situ and remote-sensing <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
near-surface concentrations. Triangles show in situ instruments for NAQMN
(bright blue, triangles pointing upwards) and for ICAD/CAPS (dark blue,
triangles pointing downwards). In addition, on 13 September 2016, CAPS at the
200 m level is depicted as green triangles with the edge up and the mean
values of both CAPS with the edge to the side (yellow). The <inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar
is plotted as green squares and the LP DOAS as different-sized circles in
shades of magenta (lowest altitude as smallest circle). BOREAS is shown as
large red circles. <bold>(b)</bold> Scatter plot of the data sets including
parameters of the orthogonal regression and Pearson's correlation
coefficients.</p></caption>
            <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f18.png"/>

          </fig>

      <p id="d1e6251">In addition to the in situ instruments, a long-path DOAS (LP DOAS) provided
by IUPH <xref ref-type="bibr" rid="bib1.bibx33" id="paren.50"/> was used for the validation. Four
reflectors attached at different altitude levels of the measurement tower
(12.7, 47, 107 and 207 m) provided unique and well-defined light paths which
enabled the calculation of concentration on several altitudes. The
instruments' elevation measurements led to profiles every 30 min. Errors
were calculated by the IUPH team.</p>
      <p id="d1e6257">Nitrogen dioxide profiles were provided only by the <inline-formula><mml:math id="M280" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar and
sonde launches. The LP DOAS did not cover enough altitude levels for a
comparison. The conversion from trace gas VMR to concentrations for all
data sets was done with the meteorological data from the CESAR observatory
<xref ref-type="bibr" rid="bib1.bibx4" id="paren.51"/>.</p>
</sec>
<?pagebreak page6850?><sec id="Ch1.S4.SS3.SSSx4" specific-use="unnumbered">
  <?xmltex \opttitle{Comparison of {$\protect\chem{NO_{2}}$} retrieval parameters}?><title>Comparison of <inline-formula><mml:math id="M281" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval parameters</title>
      <p id="d1e6292">Figure <xref ref-type="fig" rid="Ch1.F17"/> depicts the comparison of VCD for different
instruments. The agreement with Pandora is good on all days with larger
deviations in the morning and on 15 September in general with the exception
around noon. Deviations in the morning might be (similarly to the AERONET
comparison) due to spatial differences in the <inline-formula><mml:math id="M282" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> distribution, when
Pandora points to the east and MAX-DOAS to the west. This argument is
supported by the lidar measurement on 15 September that agreed well with
BOREAS and shared the same azimuthal viewing direction. In the afternoon of
that day, BOREAS VCD increased faster than Pandora and lidar, with a strong
overestimation for the last profile at 16:00 when the Sun was low. Here, we
can exclude horizontal gradients as a reason for the differences, because of the
same viewing direction of lidar and MAX-DOAS. On the same day, <inline-formula><mml:math id="M283" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
sondes proved that the BOREAS VCD was correct only during the ascent (triangle with edge at
the top) of the second launch. The matching descent (triangle with
edge at the bottom) for the first flight was approximately 38 km in the
north-westerly direction between Amsterdam and Rotterdam and agrees more with
Pandora columns, indicating differences due to azimuthal viewing directions.
The strong differences in VCD for ascent and descent of the first and second
sonde launches show high temporal and spatial variability of the
<inline-formula><mml:math id="M284" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration, which is supported by all remote-sensing
instruments.</p>
      <p id="d1e6330">The correlation with Pandora is slightly better than with lidar but the
regression parameter shows that Pandora VCDs are higher than those from
BOREAS, whereas the lidar regression is closer to 1.</p>
      <p id="d1e6333">In Fig. <xref ref-type="fig" rid="Ch1.F18"/>, near-surface <inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are
depicted. Both in situ data sets (NAQMN and
ICAD/CAPS) agree well with each
other and show larger differences only in the morning of 14 September. The LP
DOAS profiles at 12.7 and 47 m show similar concentrations to the in situ
instruments. Differences in the morning of the first 2 days between the<?pagebreak page6851?> lower
and the higher LP DOAS values indicate a strong vertical inhomogeneity, which
was also found for the aerosols (see Sect. <xref ref-type="sec" rid="Ch1.S4.SS3.SSS1"/>).</p>
      <p id="d1e6351">BOREAS surface concentrations agree very well with all data sets except
during the morning hours. On 13 September, in addition to the
ICAD/CAPS data at the 27 m level
(blue), the 200 m points are shown (green). The anti-correlated behaviour in
the morning hours confirms the strong inhomogeneity and proves that nitrogen
dioxide was mainly concentrated close to the surface at that time. The mean
values of both CAPS instruments (yellow line) show a better agreement with
BOREAS than the 27 and 200 m data.</p>
      <p id="d1e6355">It seems that BOREAS cannot fully resolve this thin near-surface layer and
retrieves rather smooth profiles instead of sharp concentration peaks (see
also the discussion about vertical sensitivity in Sect. <xref ref-type="sec" rid="Ch1.S4.SS2"/>).
This is again in agreement with the LP DOAS results on 24 September, where
the 200 m level LP DOAS finds similar concentrations to BOREAS. Note that
the <inline-formula><mml:math id="M286" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar has a finer resolution within the lowest 100 m, which
might be the reason it depicts similar concentration numbers to the other
instruments in the morning hours of 15 September. As a rough estimation of
the thickness of the individual thin layers in the morning, we divided BOREAS
VCD by the ICAD/CAPS concentration
and found that the layer height lies around 200 m (06:00–08:00), 300 m
(09:00) and 400 m (10:00) on 13 September. The mean AK FWHM for the surface
layer on that day is 214 m, indicating that the lowermost layer can be
resolved only from around 09:00 UTC where the curves approach each other. A
good agreement is found at 10:00 UTC when the concentration is focused in a
layer twice as thick as BOREAS surface resolution.</p>
      <p id="d1e6371">The correlations are high for all instruments with the highest value for
NAQMN and the <inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lidar. The in situ instruments show similar
correlations, but a slight underestimation of BOREAS can be found with slopes
between 1.22 and 1.44.</p>
      <p id="d1e6385">Figure <xref ref-type="fig" rid="Ch1.F19"/> depicts <inline-formula><mml:math id="M288" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles for BOREAS, lidar
and sondes on 15 September. Similarly to the aerosol profile comparison,
averaging kernels were applied to lidar and sondes measurements. The vertical
profiles of the unsmoothed lidar show the previously discussed high vertical
inhomogeneity. We can clearly identify a high concentration close to the
surface and another elevated <inline-formula><mml:math id="M289" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> layer with altitudes varying between
100 and 500 m. The unsmoothed sondes agree well with the lidar measurements
only at the ascent of the second launch. After the application of averaging
kernels, the two distinct layers with high concentrations are smoothed to one
layer with <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrated at the surface, again indicating a lower
vertical sensitivity of MAX-DOAS profiling. In addition, smoothed and
unsmoothed lidar find larger concentrations for altitudes over 500 m before
08:00 UTC, which was not found by BOREAS and the sonde profiles.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F19"><caption><p id="d1e6425">Comparison of <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration profiles from BOREAS,
lidar and sonde measurements for 15 September 2016.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f19.png"/>

          </fig>

</sec>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p id="d1e6454">In this study, we introduced BOREAS, a new profiling algorithm for MAX-DOAS
measurements. BOREAS retrieves aerosol extinction coefficient profiles around
<inline-formula><mml:math id="M292" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> absorption bands from the oxygen dimers differential slant column
densities. In contrast to existing inversion algorithms, which are based on
perturbation theory, BOREAS directly minimizes the difference between modelled and
measured optical depth by varying aerosol extinction coefficient profiles in
an iterative Tikhonov regularization scheme. In addition, trace gas
concentration profiles are retrieved via optimal estimation using the aerosol
properties determined in the first step. For both retrieval parts, we
introduced a priori pre-scaling as a simple method for improving results
under variable atmospheric conditions.</p>
      <?pagebreak page6852?><p id="d1e6468">The retrieval performance was demonstrated on the example of synthetic data
calculated with SCIATRAN and with real measurements taken during the
CINDI-2 campaign in Cabauw 2016. The synthetic scenarios were chosen to work
as a stress test for BOREAS. One fixed a priori profile was used for the
retrieval of different large aerosol loads and <inline-formula><mml:math id="M293" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations.
The results are good when the scenario is relatively close to the a priori
profile but fails for strong loads and concentrations. In a comprehensive
variation of parameters we showed that, in non-ideal situations, either the
shape/near-surface value or the integrated quantity can be optimized. The
information content of a MAX-DOAS scan with degrees of freedom between
<inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula> is not enough for a perfect retrieval.
Furthermore, the frequently utilized assumption of using the trace gas errors
from DOAS fits only as measurement variance was found to be insufficient
since the regularization ratio might be wrongly weighted. We suggest a manual
change in measurement errors or an iterative approach for finding the best
ratio.</p>
      <p id="d1e6502">In the second part of this study, BOREAS retrieval results from measurements
of the IUPB MAX-DOAS instrument during the CINDI-2 campaign were validated
with ancillary measurements. The agreement for all parameters was good with
correlations equal or higher than 0.75. Systematic offsets or deviations
depending on geometry, atmospheric condition and investigated air mass
indicate limitations due to the specific measurement characteristics, which
were also found in earlier MAX-DOAS profiling studies. The correlation with
AERONET AOT is 0.83 with an underestimation by BOREAS, leading to a
regression slope of 1.30. The bottom value correlation is 0.75 for the
ceilometer near-surface extinction and 0.81 for NAQMN in situ measurements.
The total column of <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> shows a good agreement with Pandora and
lidar with correlations of 0.86 and 0.79 respectively. In contrast to the
underestimation of BOREAS integrated aerosol, Pandora nitrogen dioxide
columns are overestimated, especially in the morning hours. The correlations
for near-surface <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are high with values larger
than 0.84. Stronger deviations between BOREAS and in situ instruments were found in the
morning. This was explained by the limited vertical resolution of BOREAS,
while in the morning the highest concentrations are found close to the
surface.</p>
      <p id="d1e6527">As a conclusion, BOREAS profiling capabilities are strong, which was proven by
high correlations with all validating instruments. Discrepancies were found
due to different azimuthal viewing directions of the instruments and the
limited vertical resolution of MAX-DOAS profiling when aerosol load or
concentration is close to the surface in layers thinner than the BOREAS
vertical resolution. A comparison of BOREAS results to the performance of other
MAX-DOAS profiling algorithms will be discussed in two upcoming papers
<xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx43" id="paren.52"/>.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e6537">The profiling data are available upon request (contact
persons are Tim Bösch and Andreas Richter). The individual data sets of
ancillary instruments are available from the individual PIs upon
request.</p>
  </notes><?xmltex \hack{\clearpage}?><app-group>

<?pagebreak page6853?><app id="App1.Ch1.S1">
  <title>Additional plots and retrieval of box profiles</title>
<sec id="App1.Ch1.S1.SS1">
  <title>Additional aerosol scenarios and plots</title>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F1"><caption><p id="d1e6556">Box aerosol profiles for the synthetic sensitivity study. Also
shown is the a priori profile for the aerosol retrieval (dashed line).</p></caption>
          <?xmltex \hack{\hsize\textwidth}?>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f20.png"/>

        </fig>

      <p id="d1e6567">The retrieval results for the box scenarios in Fig. <xref ref-type="fig" rid="App1.Ch1.F1"/> are
shown in Fig. <xref ref-type="fig" rid="App1.Ch1.F2"/> for different Tikhonov parameters
and SNR <inline-formula><mml:math id="M298" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3000. A priori pre-scaling leads to a
clear improvement only for scenario B3 since the bottom extinction is reached. For B2 and B3, the
resulting profile shapes change slightly, which indicates the above-mentioned
lack of improvements through pre-scaling, when the a priori profile shape
differs strongly from the true atmosphere. Nevertheless, since exponential
profiles are improved a lot and box profiles show no degradation, we highly
recommend the usage of better and more flexible a priori profiles.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F2"><caption><p id="d1e6583">Retrieval results with a fixed <bold>(a)</bold> and a pre-scaled a priori
profile <bold>(b)</bold> with varying Tikhonov parameters <inline-formula><mml:math id="M299" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> for
SNR <inline-formula><mml:math id="M300" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3000. Small <inline-formula><mml:math id="M301" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values mean less smoothing of the resulting
profiles.</p></caption>
          <?xmltex \hack{\hsize\textwidth}?>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f21.png"/>

        </fig>

<?xmltex \hack{\newpage}?><?xmltex \hack{\vspace*{16.2cm}}?><?xmltex \floatpos{th!}?><fig id="App1.Ch1.F3" specific-use="star"><caption><p id="d1e6626">Variation of SNR and Tikhonov parameter with the
relative differences in AOT and bottom extinction compared to the true value, colour
coded for scenario B1 with a priori pre-scaling.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f22.png"/>

        </fig>

      <?xmltex \floatpos{th!}?><fig id="App1.Ch1.F4" specific-use="star"><caption><p id="d1e6637">Same as Fig. <xref ref-type="fig" rid="App1.Ch1.F3"/> but for scenario B2.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f23.png"/>

        </fig>

      <?xmltex \floatpos{th!}?><fig id="App1.Ch1.F5" specific-use="star"><caption><p id="d1e6650">Same as Fig. <xref ref-type="fig" rid="App1.Ch1.F3"/> but for scenario B3.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f24.png"/>

        </fig>

      <p id="d1e6661">Figures <xref ref-type="fig" rid="App1.Ch1.F3"/>–<xref ref-type="fig" rid="App1.Ch1.F5"/> show the SNR and
Tikhonov variation for the three aerosol box profiles. One can see that for
B2 the smallest <inline-formula><mml:math id="M302" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values lead to the best bottom value, whereas for
scenario B1 these values would result in an overestimation. Also the optimal
SNR <inline-formula><mml:math id="M303" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M304" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> range for the AOT differs strongly for all box profiles,
which again shows that regularization should be considered a flexible
choice of parameters, depending on the specific atmospheric conditions.</p>
      <p id="d1e6689">Figures <xref ref-type="fig" rid="App1.Ch1.F6"/> and <xref ref-type="fig" rid="App1.Ch1.F7"/> show the
SNR and Tikhonov variation for the exponential profiles E1 and E2. Note that for
E1 all parameter combinations lead to good profiling results because the a
priori profile is close to the true atmosphere. In comparison to E3, E2 shows
a better adaptation of AOT with a coincidently similar performance for the
bottom extinction.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F6" specific-use="star"><caption><p id="d1e6699">Same as Fig. <xref ref-type="fig" rid="Ch1.F5"/> but for scenario E1.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f25.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F7" specific-use="star"><caption><p id="d1e6712">Same as Fig. <xref ref-type="fig" rid="Ch1.F5"/> but for scenario E2.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f26.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page6855?><sec id="App1.Ch1.S1.SS2">
  <?xmltex \opttitle{Additional {$\protect\chem{NO_{2}}$} scenarios and plots}?><title>Additional <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> scenarios and plots</title>
      <p id="d1e6743">Figure <xref ref-type="fig" rid="App1.Ch1.F8"/> shows the box <inline-formula><mml:math id="M306" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> scenarios, which are
retrieved for different <inline-formula><mml:math id="M307" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> values in Fig. <xref ref-type="fig" rid="App1.Ch1.F9"/>. The
standard regularization ratio for <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:mi>g</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> is again found to be oscillating
without reaching the proper bottom concentrations for E2 and E3. Higher <inline-formula><mml:math id="M309" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula>
factors show an improvement for both the fixed a priori and pre-scaled initial
guess.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.F8"><caption><p id="d1e6790">Box <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles for the synthetic sensitivity study. Also
shown is the a priori profile for the aerosol retrieval (dashed line).</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f27.png"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="App1.Ch1.F9" specific-use="star"><caption><p id="d1e6812">Retrieval results with a fixed <bold>(a)</bold> and a pre-scaled a priori
profile <bold>(b)</bold> with <inline-formula><mml:math id="M311" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> factors. Small <inline-formula><mml:math id="M312" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> values mean less measurement
weighting for the resulting profiles.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/11/6833/2018/amt-11-6833-2018-f28.png"/>

        </fig>

<?xmltex \hack{\clearpage}?>
</sec>
</app>
  </app-group><notes notes-type="competinginterests">

      <p id="d1e6848">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e6854">This study was supported by the University of Bremen and by the FP7 Project
Quality Assurance for Essential Climate Variables (QA4ECV), no. 607405.
Participation of the University of Bremen in the CINDI-2 campaign received
funding from ESA via RFQ/3-14594/16/I-SBo. The authors would like to thank
the CINDI-2 team for excellent support on site. Furthermore, we thank
François Hendrick and Marc Allaart for the provision of mean pressure and
temperature profiles used within the BOREAS retrieval of CINDI2
data.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>The article processing charges
for this open-access <?xmltex \hack{\newline}?> publication were covered by the University of
Bremen.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>Edited by: Michel Van
Roozendael<?xmltex \hack{\newline}?> Reviewed by: three anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>BOREAS – a new MAX-DOAS profile retrieval algorithm for aerosols and trace gases</article-title-html>
<abstract-html><p>We present a new MAX-DOAS profiling algorithm for aerosols and trace gases,
BOREAS, which utilizes an iterative solution method including Tikhonov
regularization and the optimal estimation technique. The aerosol profile
retrieval is based on a novel approach in which the absorption depth of
O<sub>4</sub> is directly used in order to retrieve extinction coefficient
profiles instead of the commonly used perturbation theory method. The
retrieval of trace gases is done with the frequently used optimal estimation
method but significant improvements are presented on how to deal with wrongly
weighted a priori constraints and for scenarios in which the a priori profile
is inaccurate.</p><p>Performance tests are separated into two parts. First, we address the general
sensitivity of the retrieval to the example of synthetic data calculated with
the radiative transfer model SCIATRAN. In the second part of the study, we
demonstrate BOREAS profiling accuracy by validating the results with the help of
ancillary measurements carried out during the CINDI-2 campaign in Cabauw, the
Netherlands, in 2016.</p><p>The synthetic sensitivity tests indicate that the regularization between
measurement and a priori constraints is insufficient when knowledge of the
true state of the atmosphere is poor. We demonstrate a priori pre-scaling and
extensive regularization tests as a tool for the optimization of retrieved
profiles. The comparison of retrieval results with in situ, ceilometer,
NO<sub>2</sub> lidar, sonde and long-path DOAS measurements during the CINDI-2
campaign always shows high correlations with coefficients greater than 0.75.
The largest differences can be found in the morning hours, when the planetary
boundary layer is not yet fully developed and the concentration of trace
gases and aerosol, as a result of a low night-time boundary layer having
formed, is focused in a shallow, near-surface layer.</p></abstract-html>
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