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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">AMT</journal-id><journal-title-group>
    <journal-title>Atmospheric Measurement Techniques</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1867-8548</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-12-3019-2019</article-id><title-group><article-title>Identification of platform exhaust on the RV <italic>Investigator</italic></article-title><alt-title>Identification of platform exhaust on the RV <italic>Investigator</italic></alt-title>
      </title-group><?xmltex \runningtitle{Identification of platform exhaust on the RV \textit{Investigator}}?><?xmltex \runningauthor{R. S. Humphries et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Humphries</surname><given-names>Ruhi S.</given-names></name>
          <email>ruhi.humphries@csiro.au</email>
        <ext-link>https://orcid.org/0000-0002-4864-5321</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>McRobert</surname><given-names>Ian M.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2130-257X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Ponsonby</surname><given-names>Will A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Ward</surname><given-names>Jason P.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Keywood</surname><given-names>Melita D.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9953-6806</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Loh</surname><given-names>Zoe M.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Krummel</surname><given-names>Paul B.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4884-3678</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Harnwell</surname><given-names>James</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Climate Science Centre, CSIRO Oceans and Atmosphere, Aspendale, Australia</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Engineering and Technology Program, CSIRO Oceans and Atmosphere, Hobart, Australia</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Ruhi S. Humphries (ruhi.humphries@csiro.au)</corresp></author-notes><pub-date><day>4</day><month>June</month><year>2019</year></pub-date>
      
      <volume>12</volume>
      <issue>6</issue>
      <fpage>3019</fpage><lpage>3038</lpage>
      <history>
        <date date-type="received"><day>2</day><month>July</month><year>2018</year></date>
           <date date-type="rev-request"><day>17</day><month>September</month><year>2018</year></date>
           <date date-type="rev-recd"><day>6</day><month>May</month><year>2019</year></date>
           <date date-type="accepted"><day>7</day><month>May</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 Ruhi S. Humphries et al.</copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019.html">This article is available from https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019.html</self-uri><self-uri xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e154">Oceans cover over
70 % of the Earth's surface. Ship-based measurements are an important
component in developing an understanding of atmosphere of this vast region. A
common problem that impacts the quality of atmospheric data collected from
marine research vessels is exhaust from both diesel combustion and waste
incineration from the ship itself. Described here is an algorithm, developed
for the recently commissioned Australian blue-water research vessel (RV)
<italic>Investigator</italic>, that identifies exhaust periods in sampled air. The RV
<italic>Investigator</italic>, with two dedicated atmospheric laboratories,
represents an unprecedented opportunity for high-quality measurements of the
marine atmosphere. The algorithm avoids using ancillary data such as wind
speed and direction, and instead utilises components of the exhaust itself –
aerosol number concentration, black carbon concentration, and carbon monoxide
and carbon dioxide mixing ratios. The exhaust signal is identified within
each of these parameters individually before they are combined and an
additional window filter is applied. The algorithm relies heavily on
statistical methods, rather than setting thresholds that are too rigid to
accommodate potential temporal changes. The algorithm is more effective than
traditional wind-based filters in removing exhaust data without removing
exhaust-free data, which commonly occurs with traditional filters. In
application to the current dataset, the algorithm identifies 26 % of the
wind filter's “clean” data as exhaust, and recovers 5 % of data falsely
removed by the wind filter. With suitable testing, the algorithm has the
potential to be applied to other ship-based atmospheric measurements where
suitable measurements exist.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e172">When undertaking atmospheric composition and chemistry measurements, a common
issue that impacts data quality is the ability to effectively identify and
potentially filter out sources of contamination. The most common local
contamination source is often emissions from power generation. Typically,
power generation burns hydrocarbon fuels (such as diesel) and emits a range
of combustion products that are often the target species being measured in
the background atmosphere.</p>
      <p id="d1e175">Identification of periods of contamination is performed via a variety of
methods depending on the contamination source and the target research
question. A commonly used and reasonably reliable method for identification
of local point source contaminants is by simple wind direction and speed
criteria <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx16 bib1.bibx4" id="paren.1"><named-content content-type="pre">e.g.</named-content><named-content content-type="post">and references therein</named-content></xref>. This method aims to capture the exhaust plume diffusion
processes using the two wind measurements as proxies. It is a robust method
in environments where background composition is similar to the contamination
source, such as in urban areas. However, because of the oversimplified
parameterisation, very conservative bounds are often required, which results
in the removal of often significant numbers of contaminant-free data. In
addition, this method assumes relatively uniform flow characteristics and
will fail when atmospheric recirculation results in measurements of
contaminated air from directions outside the specified range.
Figure <xref ref-type="fig" rid="Ch1.F1"/> exemplifies this issue, where cloud
condensation nuclei (CCN) number concentrations are found to be unreasonably
high for the marine dataset used here, even after a wind speed and direction
filter is utilised.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e189">CCN plotted against wind direction (relative to the platform) from
the RV <italic>Investigator</italic> voyage IN2016_V03. Red: all raw data. Blue:
after data are removed when wind speed is less than 5 <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> or
relative wind directions between 90 and 270<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Uncontaminated data are
usually less than 1000 <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> – see
Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F5"/>. Data filtered with just wind
measurements still show clear signs of contamination.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f01.png"/>

      </fig>

      <?pagebreak page3020?><p id="d1e244"><?xmltex \hack{\newpage}?>Depending on the environment, a combination of wind criteria and
in situ composition measurements can be used to help overcome the
recirculation issue. For example, high concentrations of nitrogen oxides
(<inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) produced from combustion processes will react rapidly
with background ozone (<inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), resulting in <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-depleted air,
which will only regenerate hours downwind through <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
chemistry and photolysis processes <xref ref-type="bibr" rid="bib1.bibx17" id="paren.2"/>. The use of
<inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> can improve wind-based filters to help identify recirculation,
depending on the timescale of interest <xref ref-type="bibr" rid="bib1.bibx6" id="paren.3"><named-content content-type="pre">e.g.</named-content></xref>.
However, the problem of false-positive identification remains as long as
measurements of ancillary data are used for identification. Ideally,
identification of contaminated air would use only measurements of species
emitted directly by the source itself in order to minimise false-positive
contaminant identification and maximise the usable data from a dataset.</p>
      <p id="d1e312">In the current study, an exhaust identification algorithm is developed for
application to data collected on board Australia's new marine research vessel
(RV) <italic>Investigator</italic> utilising measurements of species emitted directly
by combustion processes occurring on the ship – namely diesel combustion and
waste incineration. Both combustion processes (hereafter referred to as
“exhaust”) have similar emissions relative to the background atmosphere
<xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx8 bib1.bibx9" id="paren.4"><named-content content-type="post">and references therein</named-content></xref>. Emitted
species include carbon dioxide (<inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), carbon monoxide (<inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>),
<inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, hydrocarbons and high concentrations of
aerosols (condensation nuclei, CN), which include those whose composition is
primarily black carbon (BC) as well as those that can act as CCN.
Measurements of <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC and CN are utilised for the
development of this exhaust identification algorithm as they have clear
signals above the background atmosphere and are measured routinely on the
vessel.</p>
      <p id="d1e373">Figure <xref ref-type="fig" rid="Ch1.F2"/> shows an example period of data from the
vessel that illustrates the different signals resulting from exhaust
influence that must be characterised in the algorithm. Exhaust influence in
CN, <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> data is obvious with striking enhancements
above variable background signals throughout the sample period. BC data are
generally close to zero, with exhaust influence obvious when a signal appears
out of the noise. Strong perturbations over extended periods, such as those
observed on 18 May, are indicative of direct exhaust influence. Smaller
signals, such as those observed in CN data on 19 May, or in BC data on
20 May, indicate a more dilute influence, with sampling likely occurring on
the wavering edge of the exhaust plume.</p>
      <p id="d1e397">Not all measured parameters respond to the exhaust to the same extent, or
necessarily at all. A few examples of this are shown when looking at the
time series of the parameters (Fig. <xref ref-type="fig" rid="Ch1.F2"/>). Generally
when this occurs, a signal is observed in CN data, but is absent in the other
species. This is likely a result of the magnitude of differences in exhaust
signal in each parameter, as well as sensitivity of the measurement
techniques of the different species.
Figure <xref ref-type="fig" rid="App1.Ch1.S1.F5"/> clearly shows the magnitude
differences of the various instruments with exhaust strikes. Exhaust strikes
in CN are observed as perturbations of almost 4 orders of magnitude, while
those in BC, <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are factors of 10, 0.2 and 0.01,
respectively. Being a simple counting instrument, the condensation particle counter (CPC) is sensitive to
particle concentrations down to 1 <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. For the <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements, although precision is high, the flow-through-cell
technique utilised results in physical integration of the sample over a
minute, thereby smoothing out any perturbations. For BC measurements, the
detection limit of the instrument is 0.05 <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> over a
10 min average. At 1 Hz time resolution, we are still able to get a useful
signal (for the current purpose) at 0.01 <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> mass
resolution; however the instrument is clearly missing significant exhaust
influence.</p>
      <p id="d1e495">The RV <italic>Investigator</italic> is a blue-water research vessel capable of
traversing from the ice edge to the Equator. The types of atmospheres it
encounters range from pristine background, to continental (e.g. while
sampling near the coast), to urban environments (e.g. while in port). An
important objective of this algorithm is the ability to distinguish the local
ship exhaust from the atmosphere of interest – a task which becomes
particularly difficult in the more polluted environments such as those
downwind of large urban centres. In this study, the dataset utilised for
development contains influences from urban and background marine regions (as
shown in Figs. <xref ref-type="fig" rid="App1.Ch1.S1.F6"/> and <xref ref-type="fig" rid="App1.Ch1.S1.F7"/>) by
which differentiation from ship exhaust can be achieved. The ship track of
the utilised voyage is shown in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F8"/>.</p>
      <?pagebreak page3021?><p id="d1e507">In this study, an algorithm is developed that produces an exhaust
identification product that is published alongside other publicly available
datasets from this platform. The algorithm aims to accurately identify
exhaust from the ship itself, distinct from other polluted atmospheres such
as urban centres, and minimise false-positive identification in order to
retain as much valuable data from this mobile platform as possible. The
exhaust product is developed utilising a dataset exemplifying the range of
atmospheres that are sampled and is validated by applying it to measurements
of CCN that were measured simultaneously.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Instrumentation</title>
      <p id="d1e518">The RV <italic>Investigator</italic> (schematic shown in
Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F9"/>) is a state-of-the-art research platform
commissioned in 2015 by the Australian government. The vessel is designed for
blue-water research and is capable of spending up to 300 d per year at sea,
with a single voyage up to 60 d and over 10 000 nautical miles. Propulsion
and power are provided by two diesel–electric engines together with three
3000 <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kW</mml:mi></mml:mrow></mml:math></inline-formula>, nine-cylinder diesel engines. Exhaust from diesel
combustion, together with waste incineration, which is emitted from a separate
but co-located flue, provides the largest source of contamination to
atmospheric measurements aboard the platform.</p>
      <p id="d1e534">The vessel has been purpose built with two dedicated atmospheric laboratories
along with a custom-designed air sampling inlet located above the ship's bow,
approximately 18.4 <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> above sea level. The aerosol laboratory is
situated directly underneath the air sampling inlet fore of the anchor well,
such that the distance between sampling and instrumentation, and thus sample
losses, is minimised (total distance to the aerosol laboratory's sampling
manifold is <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>). The aerosol laboratory houses instrumentation
for the measurement of aerosols and the reactive gas ozone. The air chemistry
laboratory is situated further aft in the vessel at the fore of the
superstructure (total distance from main sample inlet to the air chemistry
laboratory's sampling manifold is <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">38</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>), and houses
instrumentation for the measurement of less reactive atmospheric species such
as greenhouse gases and volatile organic compounds.</p>
      <p id="d1e581">The RV <italic>Investigator</italic> houses a range of permanent instrumentation.
These instruments are run continuously throughout every voyage of the RV
<italic>Investigator</italic> (except for when instruments are removed for
maintenance or faults) and after data have been calibrated, and quality
assurance and control procedures have been performed, data are made publicly
available. Of particular relevance to this study is the measurement of
<inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC, CN and meteorological measurements. Each of
these parameters will be described in detail in future publications
documenting the ongoing measurements of the vessel; however a brief overview
of these measurements is given here. For this analysis, CCN data are
utilised as an independent parameter by which the exhaust identifier is
tested. The dataset considered in this paper utilised CN and CCN data
captured by instrumentation deployed specifically for this voyage, and thus
will be described separately. It is worth noting that both CN and CCN
instrumentation have more recently become part of the permanent ongoing
instrument suite and will be described in a future publication and made
publicly available alongside other aerosol data from the platform.</p>
      <p id="d1e609">An important outcome of the current work is to make publicly available an
exhaust identification data product that will be published alongside other
atmospheric datasets from the vessel in order to assist data users in their
analyses. For the present paper, the exhaust identification product has
been developed using data from the RV <italic>Investigator</italic> voyage
IN2016_V03 (see <xref ref-type="bibr" rid="bib1.bibx11" id="altparen.5"/>, for voyage track), and data utilised
and produced in this paper are available from
<xref ref-type="bibr" rid="bib1.bibx7" id="text.6"/>.</p>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><?xmltex \opttitle{Carbon monoxide, {$\protect\chem{CO}$}}?><title>Carbon monoxide, <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e637">Mixing ratios of carbon monoxide (<inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>) were measured continuously at
1 <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula> using a mid-infrared (IR) quantum cascade laser spectrometer
(Aerodyne Research Inc, Billerica, MA, USA). A high-vacuum dry scroll pump
(model SH-110, Varian, Lexington, MA, USA) draws air through the
0.5 <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> optical cell maintained at a constant pressure of
6 <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kPa</mml:mi></mml:mrow></mml:math></inline-formula>, and flushed at a rate of
approximately 0.5 <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Mid-IR laser light enters the
astigmatic multi-pass cell, traversing it 238 times, giving an effective path
length of 76 <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. Upon exit from the optical cell, the light impinges
on a thermoelectrically cooled IR detector, allowing a mixing ratio to be
determined via Beer's law. The nominal precision of the <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> measurement
is 60 <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppt</mml:mi></mml:mrow></mml:math></inline-formula> in 1 s (owing to the long-path length and strong
transition of the <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> molecule in the mid-IR). Water vapour is also
measured, allowing for the <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratio to be corrected to a dry
air mixing ratio, without the need to pre-dry the sample.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><?xmltex \opttitle{Carbon dioxide, {$\protect\chem{CO_{2}}$}}?><title>Carbon dioxide, <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e749">Atmospheric mixing ratios of carbon dioxide (<inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are measured
continuously at 1 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula> on board the RV <italic>Investigator</italic> using a
Picarro cavity ring-down spectrometer (model G2301, unit CFADS2315, Picarro
Inc., Santa Clara, CA, USA) that concurrently measures methane (<inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)
and water vapour. Air is drawn through the 35 sccm optical cell held at
constant temperature and pressure (45 <inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and 19 kPa), at a rate
of approximately 0.15 <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The ends of the cell comprise
highly reflective mirrors that recirculate the light supplied by a
near-infrared (NIR) laser through the cavity, resulting in an effective path
length of around 20 <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. Light leaks out of the mirrors, impinging on
a photodetector with a characteristic ring-down time. Carbon dioxide molecules
within the cell also absorb a fraction of the light, modulating the ring-down
time in proportion to their concentration. By scanning<?pagebreak page3022?> the laser off the
absorption peak and remeasuring the ring-down time, the technique becomes
insensitive to fluctuations in laser power. The precision of the <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
measurement is better than 0.05 ppm at a minute average. Data used in this
paper are raw <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dry air mixing ratios (by an empirical correction
using the native water vapour measurement). <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> data are also
available as minute and hourly mean dry air mixing ratios that have been
calibrated and drift corrected through the daily measurement of a reference
tank.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Black carbon, BC</title>
      <p id="d1e861">Black carbon measurements are made using a multiangle absorption photometer
(MAAP model 5012, Thermo Fisher Scientific, Air Quality Instruments,
Franklin, MA, USA). The MAAP collects aerosol on a glass fibre tape that gets
irradiated with 670 <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:math></inline-formula> light. Photodetectors measure the light
transmission and reflection in the forward and back hemispheres,
respectively, and after inversion, report black carbon concentrations in real
time. The inversion algorithm takes into account multiple-scattering
processes inside the aerosol sample and between the sample and the filter
matrix and utilises a carbon mass absorption coefficient of
6.6 <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The detection limit of the instrument was calculated
by choosing an exhaust-free period (midnight 23 April to
18:00 UTC (for all times) 25 April) in the deep Southern Ocean, where sources of BC
are absent other than the platform exhaust. At 1 <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula>, the detection
limit was calculated to be 0.05 <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The choice of an
appropriate threshold must be performed carefully with this detection limit
in mind, and is discussed further in Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Aerosol number concentration, CN</title>
      <p id="d1e929">Number concentrations of condensation nuclei larger than 3 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:math></inline-formula> (CN)
were measured continuously at 1 <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula> using a condensation particle
counter (CPC model 3776, TSI Inc., Shoreview, MN, USA). The CPC works by drawing
the aerosol sample continuously through a chamber of supersaturated
1-butanol,
which condenses onto particles larger than 3 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:math></inline-formula>, growing them to
sizes (above 1 <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) which can be counted individually by a simple
optical particle counter. Sample flow rate is regulated by a critical orifice
at 1.5 <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. This flow rate was checked every few days at the
instrument inlet using an external flowmeter (Sensidyne Gilibrator, St.
Petersburg, FL, USA) and flow rates were found not to deviate beyond 1 %.
Although flow calibrations were not necessary for this algorithm, the software
used for filtering the data simultaneously performs flow calibrations, so
calibrated data are used here. Data are also filtered for periods of
instrument zeros and the disconnection of the instrument from the sampling
line. Note that for voyages after September 2016, a permanent CPC (model
3772, TSI, Shoreview, MN, USA), measuring CN larger than 10 <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:math></inline-formula>, was
installed on the platform (described in detail in future publications) and is
used as the CN data stream.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><?xmltex \opttitle{Cloud condensation nuclei, {$\protect\chem{CCN}$}}?><title>Cloud condensation nuclei, <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CCN</mml:mi></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e1008">Number concentrations of cloud condensation nuclei (CCN) were measured
continuously at 1 <inline-formula><mml:math id="M63" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula> using a continuous-flow streamwise
thermal-gradient CCN counter (CCNC, model CCN-100, Droplet Measurement
Technologies, Longmont, CO, USA). The instrument was situated at
approximately the same distance from the inlet as the CPC, connected to the
manifold using a combination of stainless-steel and flexible conductive
tubing. The instrument was configured to run continuously at 0.5 %
supersaturation, which after pressure calibrations, was found to equate to
0.5504 % supersaturation. The flow rate of the instrument was set to the
standard 0.5 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Flows were checked weekly using an external
flowmeter (Sensidyne Gilibrator, St. Petersburg, FL, USA) and concentrations
were corrected in post-processing procedures based on actual flow rates
(maximum of 2 % flow deviation). Data were quality controlled by removal
of periods during which maintenance was performed and calibrated for pressure
and flow rates.</p>
</sec>
<sec id="Ch1.S2.SS6">
  <label>2.6</label><title>Meteorological data</title>
      <p id="d1e1044">Meteorological data were measured continuously whilst the ship was underway.
Meteorological measurements include air temperature, relative humidity,
barometric pressure, solar radiation, precipitation, sea surface temperature,
wind speed and direction. Of particular interest to the exhaust filtering
algorithm are measurements of wind speed and direction. Dual wind monitors
(Marine Wind Monitor, model 05106, R.M. Young Company, Traverse City,
Michigan, USA) are affixed to the vessel's foremast at a height of
24 <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the water line, each offset from the ship's centreline by
<inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, one to starboard and the other to port. The measurable
wind speed range of the wind monitors is 0–100 <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> %), with an azimuth range of 0–355<inline-formula><mml:math id="M70" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>;
relative to ship centre line; the 5<inline-formula><mml:math id="M73" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> dead zone of which is directed
aft). An ultrasonic two-axis anemometer (WindObserver II, Gill Instruments,
Lymington, Hampshire, UK) is also affixed to the foremast 21 <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from
the water line and <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> to port from the ship's centreline.
The ultrasonic anemometer measures wind speed in the range
0–65 <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (0.01 <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> resolution and <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> %
at 12 <inline-formula><mml:math id="M80" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and azimuth range of 0–359<inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (1<inline-formula><mml:math id="M82" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
resolution and <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> % at 12 <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Wind sensors are
calibrated annually by Ecotech Australia to the reference standard ISO
17713-1:2007.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Exhaust identification</title>
      <p id="d1e1280">The primary task of the algorithm is that of distinguishing between two
distinctly different signals in our data. Because of the magnitude of the
difference, a first pass of the exhaust<?pagebreak page3023?> identification is simply an
application of outlier detection algorithms. However, on closer inspection,
the variability of the exhaust signal due to variations in source strength,
dilution and plume location sampling, as well as the shear length of time
that the exhaust can influence measurements (from seconds to days), makes many
of the more well-known detection algorithms unsuitable to this problem. This
is discussed more in Appendix Sect. <xref ref-type="sec" rid="App1.Ch1.S1"/>
where a number of algorithms, including fast Fourier transform, <inline-formula><mml:math id="M85" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score and
modified <inline-formula><mml:math id="M86" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score, double exponential smoothing, and histogram methods, were
tested and found to be unsuitable. Hence this complicates the goal of the
algorithm to differentiate between these two distinct but varying signals
(i.e. exhaust and ambient in a range of environments).</p>
      <p id="d1e1299">Exhaust identification is performed primarily utilising the intersection
between four parameters commonly emitted in fossil fuel combustion processes,
namely <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC and CN. Figure <xref ref-type="fig" rid="Ch1.F2"/>
shows the variability of these species during periods of exhaust influence
and within background air (defined here as not influenced by exhaust from the
measurement platform, the RV <italic>Investigator</italic>). Distinct signals are
observed in all four variables; however it is important to note that not all
signals respond simultaneously. This concept is discussed in detail later in
the paper.</p>
      <p id="d1e1326">Because of the differences in their exhaust responses, identification is
performed on each of the parameters separately at 1 <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">Hz</mml:mi></mml:mrow></mml:math></inline-formula>, after which
they are combined (aligned by time) and an additional window filter is
applied to remove neighbouring values that are not captured completely by the
parameters themselves. Each instrument connected to the
<italic>Investigator</italic>'s sampling system will also exhibit temporal variations
in their responses to exhaust strikes due to differences in residence and
detector response times. Because of this, it is impossible to create a single
exhaust identification product that can be applied to every instrument that
collects data on this platform. To effectively achieve a perfectly exhaust-free dataset for each instrument without removing substantial data that
are
free from exhaust, identification should ideally be performed on each dataset
individually. Nevertheless, the creation of this exhaust identifier product
is useful in that it creates a first-pass filter that identifies the vast
majority of the exhaust influence. With this in mind, a relatively
conservative approach is adopted in order to strike a balance between not
identifying periods of exhaust influence, and the false-positive
identification of background data as exhaust. Since the product is not used
to filter published datasets, but instead is published alongside other data,
it is left to the end user to determine whether more stringent criteria
should be applied to specific datasets than the relatively conservative
approach adopted here.</p>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>BC threshold filter</title>
      <p id="d1e1347">In the background atmosphere, BC is generated from combustion sources such as
fossil fuel burning and biomass burning <xref ref-type="bibr" rid="bib1.bibx15" id="paren.7"/>. Moreover,
the lifetime of BC is on the order of days <xref ref-type="bibr" rid="bib1.bibx3" id="paren.8"/> and combined with
transport dilution, seeing elevated values beyond the instrument sensitivity
is rare. This is illustrated in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F7"/> where the
baseline trend observed in CN during a period of urban influence (26 May) is
absent in the BC data. Consequently, a set threshold value can be utilised
for BC, whereby any data above this threshold are identified as exhaust.</p>
      <p id="d1e1358">The threshold for exhaust was determined by selecting numerous periods when
background air was being measured without exhaust influence, and selecting
the maximum value during these periods. For the dataset being utilised for
this paper, a value of 0.07 <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> was chosen, which is
suitable for remote locations and above the detection limit.
Figure <xref ref-type="fig" rid="Ch1.F2"/> shows one such period when the ship was
located southeast of New Zealand in the deep Southern Ocean. For most
voyages undertaken by this vessel this BC limit is suitable; however when the
scientific questions are concerned with air masses downwind of major pollution
sources, such as urban centres or significant biomass burning events, this
limit should be increased. This is illustrated in
Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F7"/> where the first week of June shows increased
baseline values of CN and also BC due to the vessel coming into and out of
the port in Wellington, New Zealand. If these periods were of particular
interest, and the data loss from the standard limit was unacceptable, a new
increased limit would need to be determined by choosing a period
representative of the scientific outcome. Alternate statistical methods, such
as choosing a limit based on the 95th percentile or similar scheme, are not
generally suitable for the choice of the limit since these generally rely on
“outlier”-type data, rather than what is observed here.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><?xmltex \opttitle{Variance filter for {$\protect\chem{CO}$}, {$\protect\chem{CO_{2}}$} and CN}?><title>Variance filter for <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and CN</title>
      <p id="d1e1413">In contrast to BC, <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and CN all have persistent,
non-zero background signals in the atmosphere and consequently a simple
threshold filter cannot be utilised. For these datasets, the variability is
characterised on each dataset and outliers in the positive direction are
identified as exhaust. As discussed by <xref ref-type="bibr" rid="bib1.bibx10" id="text.9"/>, the robust
statistical parameters of median and median absolute deviation (MAD) are
useful in the detection of outliers since they are relatively insensitive to
outliers compared to the mean and standard deviation (SD) that are commonly
utilised.</p>
      <?pagebreak page3024?><p id="d1e1438">For a univariate dataset <inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the MAD is defined as the
median of the absolute deviations from the data's median:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M96" display="block"><mml:mrow><mml:mi mathvariant="normal">MAD</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">median</mml:mi><mml:mo>(</mml:mo><mml:mo>|</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="normal">median</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>)</mml:mo><mml:mo>|</mml:mo><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          It is well established that for normally distributed data (such as is being
explored here for data without exhaust), the median and mean are equivalent.
The same can be said for the MAD and the SD provided a standard factor is
applied <xref ref-type="bibr" rid="bib1.bibx14" id="paren.10"><named-content content-type="post">and references therein</named-content></xref> such that
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M97" display="block"><mml:mrow><mml:mi mathvariant="normal">SD</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.4826</mml:mn><mml:mo>×</mml:mo><mml:mi mathvariant="normal">MAD</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e1530">To identify the exhaust, the data point in question must be assessed to
determine if it is within an acceptable range that represents the background
atmosphere. Defining this acceptable range deserves thoughtful consideration.
Given the variability of <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and CN in the background
atmosphere, a predefined range would not be fit for purpose. This
circumstance lends itself naturally to the use of a rolling window. For this
algorithm, numerous statistical parameters (median, MAD and SD) are
calculated on a detrended, centred rolling 5 min window. Although
variable, the 5 min width of this rolling window is chosen here so that
there are enough data for statistical robustness, yet short enough to capture
real changes in atmospheric state.</p>
      <p id="d1e1553">It is important to note that when the fraction of outliers dominates
(<inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> %) a sample (or window), median-based statistics also become
sensitive to outliers. This will happen when, for example, the rolling window
is sampling during an exhaust period that persists longer than half the
window period. To get a statistical dataset that represents the background
atmosphere to which raw data can be compared, alternative values must be
sought during these periods when all calculated statistics are affected.</p>
      <p id="d1e1566">The first step in this process is to identify periods when median-based
statistics are affected in the rolling window. Comparing the rolling SD
(<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and MAD (<inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) could be effective for
identifying these periods since one is sensitive to outliers while the other
is not, respectively. However, since the exhaust could represent up to
100 % of the sample window, the rolling MAD (<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and SD
(<inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) could be similar, ruling out comparing these two
parameters as a method for identification. To overcome this, a single MAD
value (<inline-formula><mml:math id="M105" display="inline"><mml:mrow class="unit"><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) that is representative of the background atmosphere is
sought to which we can compare <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1636">Analysis of CN, <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> data shows that
<inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are generally tightly grouped, but have a small fraction
of large outliers, as shown in Figs. <xref ref-type="fig" rid="App1.Ch1.S1.F10"/>,
<xref ref-type="fig" rid="App1.Ch1.S1.F11"/> and <xref ref-type="fig" rid="App1.Ch1.S1.F12"/>. Choosing the median
of this <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> dataset, <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="unit"><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, yields the value
representative of the background atmosphere to which <inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can be
compared and exhaust-affected median statistics can be replaced. Time periods
with <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SD</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> larger than 3 times <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="unit"><mml:msub><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are then flagged
and values during these periods are replaced with values obtained by linear
interpolation with neighbouring values, yielding new datasets,
<inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msubsup><mml:mi>M</mml:mi><mml:mi>i</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi>i</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, that represent the
rolling median and MAD without influence from exhaust. Having obtained
statistical datasets reasonably free from exhaust influence, exhaust can be
identified in the raw data such that
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M117" display="block"><mml:mrow><mml:mi>x</mml:mi><mml:mo>&gt;</mml:mo><mml:msubsup><mml:mi>M</mml:mi><mml:mi>i</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msubsup><mml:mo>+</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:msubsup><mml:mi mathvariant="normal">MAD</mml:mi><mml:mi>i</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msubsup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M118" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> is the raw <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or CN data.</p>
      <p id="d1e1814">The algorithm only identifies positive deviations as exhaust, ignoring
negative outliers. This is done because the exhaust can only add signal to
the background for these three parameters at this range and at this high
frequency. Inclusion of the lower limit could erroneously identify exhaust
time periods which are simply instrument zeros or calibrations that may not
have been removed from the datasets prior to their use in the algorithm.</p>
      <p id="d1e1817">The use of uncalibrated and uncorrected <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and CN data is
acceptable within the algorithm so long as periods of instrument calibrations
in the positive direction are removed from the datasets prior to use (only
positive since the exhaust influence on these parameters are all in this
direction). This is because the algorithm is sensitive to high-frequency
changes like exhaust strikes or instrument zeros, rather than lower-frequency
variations, such as instrument drifts, and takes no account for the absolute
value of the signal.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Window filter</title>
      <p id="d1e1847">Once identified by either <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC or CN, separate
data streams are aligned on the time dimension and a combined exhaust
identifier is created such that exhaust is present if detected by any of the
four parameters. To this dataset, a window filter is applied. This rolling
filter sums the number of exhaust points in the window. If this sum is larger
than 10 % of the number of points in the window, then all data points within
that window are labelled as exhaust. The 10 % threshold is important
because variations in one of the three parameters (arising from the use of
raw data streams) could mistakenly identify a time period as exhaust without
verification from either sustained exhaust identification or other
parameters. Additionally, this 10 % threshold, together with the choice
of the window width (here set to 20 min), creates a buffer that accounts for
differences in residence times of atmospheric samples in the sample lines and
in the instruments themselves (the greenhouse gas measurements are
approximately 40 <inline-formula><mml:math id="M125" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> downstream of the aerosol measurements, resulting
in time differences on the order of seconds, compared to the window width,
which is several orders of magnitude larger).</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Results and discussion</title>
      <p id="d1e1886">Figure <xref ref-type="fig" rid="Ch1.F2"/> shows a subset of data to illustrate the
exhaust filter when applied to the CCN dataset. CCN are used here as an
independent dataset to test the exhaust filter algorithm and ensure its
applicability beyond the parameters used in the algorithm itself. In
addition, exhaust strikes are easily visible in the CCN dataset, making it
useful for this purpose.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e1893">A 4 d subset of the data from the 2016 voyage used to illustrate the
algorithm, with filtered data (black) shown atop the raw data (red). Panel
<bold>(a)</bold> shows the unfiltered CCN data along with data after the full
filter is applied. Panels <bold>(b)</bold> to <bold>(e)</bold> show the filter
parameters as both raw and with their individual filters applied. The green
line in <bold>(d)</bold> represents the BC limit of 0.07 <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
utilised. All data are raw instrument output without calibrations to aid in
rapid dissemination of the exhaust identification product. Timestamps are
UTC. Note that <inline-formula><mml:math id="M127" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axes are limited in range to reveal baseline values (full
data shown in Figs. <xref ref-type="fig" rid="App1.Ch1.S1.F6"/> and <xref ref-type="fig" rid="App1.Ch1.S1.F7"/>).
Exhaust signal for <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC and CN extends up to
<inline-formula><mml:math id="M130" display="inline"><mml:mn mathvariant="normal">800</mml:mn></mml:math></inline-formula> <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M132" display="inline"><mml:mn mathvariant="normal">490</mml:mn></mml:math></inline-formula> <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M134" display="inline"><mml:mn mathvariant="normal">10</mml:mn></mml:math></inline-formula> <inline-formula><mml:math id="M135" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M137" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, respectively.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f02.png"/>

      </fig>

      <p id="d1e2047">Although not 100 % effective, the algorithm removes the vast majority of
exhaust influence and its effectiveness, particularly compared to other
methods, is clearly apparent (Fig. <xref ref-type="fig" rid="Ch1.F2"/>). It is clear
from Fig. <xref ref-type="fig" rid="Ch1.F3"/>, where each parameter of the<?pagebreak page3025?> filter is
applied separately, that none of the parameters are capable of entirely
capturing the exhaust influence individually. The CN filter is the most
effective, presumably because the exhaust signal is orders of magnitude
higher than background values and the response time is rapid. Nevertheless, a
significant fraction of exhaust periods make it through the CN filter. When
all parameters are used together, the exhaust filter improves dramatically,
although a small fraction of exhaust values remain. The application of the
window removes most of the remaining exhaust-affected data, resulting in a
dataset that can be confidently used in subsequent analyses of the background
atmosphere.</p>
      <p id="d1e2055">Figure <xref ref-type="fig" rid="App1.Ch1.S1.F13"/> shows different combinations of
the individual filters to demonstrate the effectiveness of each filter.
Combining both Figs. <xref ref-type="fig" rid="Ch1.F3"/> and
<xref ref-type="fig" rid="App1.Ch1.S1.F13"/> indicates that CN is the most
effective parameter, followed by BC, <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M139" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. By itself,
CN removes the vast majority of the exhaust influence, but alone is
incomplete. While this suggests that a simple filter utilising CN and only
one of the other three parameters could be used to produce a similarly
effective filter, in practice, having all three measurements (i.e. BC,
<inline-formula><mml:math id="M140" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M141" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) provides important redundancy. Currently, if
problems occur with the CN measurements, the effectiveness of the exhaust
filter is significantly reduced, as shown by
Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F13"/>h. Given the importance of the CN
data to being able to effectively identify exhaust, instrumental redundancy
for CN measurements is an important feature of the platform that is currently
being implemented.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e2107">CCN data (linear scale) with the different steps of the algorithm
applied separately: panel <bold>(a)</bold> shows unfiltered data, panels
<bold>(b)</bold> to <bold>(e)</bold> show single-parameter filters, panel
<bold>(f)</bold> shows the combination of the four parameters, and panel
<bold>(g)</bold> shows the full filter, which includes all parameters and the
application of a window removal. Note the change in scale of the <inline-formula><mml:math id="M142" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis in
the final panel.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f03.png"/>

      </fig>

      <p id="d1e2139">Interestingly, there are some periods which still show short periods of
exhaust in the filtered CCN data, as shown in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F14"/>.
Here, the exhaust is easily identified by the CN filter algorithm; however
after applying the exhaust to the time-synchronised CCN data, the exhaust
signal is delayed in the CCN data by about 10 <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula>, presumably due to
the longer residence time of the CCN instrument. It is possible to alter the
algorithm in such a way that the 20 <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> window applies to any period
identified as exhaust (rather than having the threshold described in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>); however this has the immediate ramification of
large losses of data that would otherwise be classified as background, which
would be unacceptable for this purpose. Instead, this exhaust identifier has
been designed to be used as an initial step, and if more stringent
bounds are required by the end user, a more strict window filter can be
applied at that time. In addition, individual datasets should be analysed for
any remaining exhaust to account for differences in residence time and
sampling regimes.</p>
      <p id="d1e2162">Application of the algorithm to other atmospheric datasets is an important
verification step beyond that of CCN, which is a very similar measurement to
that of CN measurements. In Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F15"/>, aerosol size
distributions, measured using a scanning mobility particle sizer (GRIMM SMPS
model 5.420 with M-DMA installed, GRIMM Aerosol Technik, Ainring, Germany),
are shown as raw data, as well as with both the wind-based filter and the
exhaust algorithm applied. Both filter methods are effective at removing much
of the exhaust influence; however the exhaust algorithm shows distinct
advantages for more accurate exhaust identification, recovering more
exhaust-free data and removing exhaust-laden data compared with the
wind filter.</p>
      <p id="d1e2167">Comparison of the algorithm to the traditional wind-based filter shows
significant advantages. When applied to this dataset, the algorithm is able
to recover 5 % (1 h) of data that the wind filter identified as exhaust,
and removes 26 % (37 h) of data that the wind filter identified as
clean. This is shown most clearly in
Fig. <xref ref-type="fig" rid="Ch1.F4"/> (also apparent in
Figs. <xref ref-type="fig" rid="App1.Ch1.S1.F16"/> and <xref ref-type="fig" rid="App1.Ch1.S1.F17"/>). Data
recovery is obvious in this figure from data present between relative wind
directions of 90 and 270<inline-formula><mml:math id="M145" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, while the high concentrations observed
outside these ranges, which are exhaust signal, is removed by the algorithm.
From the time series case study of Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F16"/>,
it can be seen that many of the<?pagebreak page3026?> exhaust signals missed by the wind filter are
those on the edges of a large exhaust period, or simply just small exhaust
strikes that might occur when the ship is turning.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e2190">As in Fig. <xref ref-type="fig" rid="Ch1.F1"/>, but with the addition of CCN data
filtered using the algorithm described in this paper. The algorithm is
significantly more effective than the traditional wind-based filter.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f04.png"/>

      </fig>

</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e2210">A ship exhaust identification algorithm is described that utilises only
components of the combustion exhaust, rather than commonly utilised ancillary
data such as wind speed and direction. <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC and CN data
are used as exhaust indicators and together with surrounding time-window
removal, a robust exhaust identification method results. Statistical methods
feature heavily in the algorithm in order to avoid, as much as possible,
cut-off thresholds that can be subjective. The algorithm exhibits
significantly improved performance compared to more traditional filters,
identifying all of the exhaust periods (26 % of data identified as clean
by wind filters were identified as exhaust by this algorithm), as well as
recovering data falsely identified by other overzealous or indiscriminate
methods (the algorithm recovered 5 % of data that wind-based filters
removed), thereby optimising usable data. The algorithm is applied directly
to data from the RV <italic>Investigator</italic> for which it was specifically
developed and the resulting data product will be made available alongside
other publicly available data from the research platform.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e2239">Input data and the exhaust product calculated for the
sample data utilised in this paper are available at
<ext-link xlink:href="https://doi.org/10.4225/08/5b39a08a00bb5" ext-link-type="DOI">10.4225/08/5b39a08a00bb5</ext-link> <xref ref-type="bibr" rid="bib1.bibx7" id="paren.11"/>. Please
contact the author for access to code.</p>
  </notes><?xmltex \hack{\clearpage}?><app-group>

<?pagebreak page3027?><app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Outlier detection algorithms</title>
      <p id="d1e2259">Due to the magnitude of differences between the exhaust air and ambient air,
exhaust can in the first instance be treated as outliers to the ambient data.
The caveat to this is that not infrequently, the exhaust is itself the
dominant influence in the data, making the ambient data itself the outlier.
This makes the application of traditional outlier detection algorithms
difficult, and is ultimately the reason why a specialised algorithm was
developed for operational deployment. During the development stages though, a
number of methods were tested.</p>
      <p id="d1e2262">Outlier detection methods are classified into six broad groups
<xref ref-type="bibr" rid="bib1.bibx1" id="paren.12"/>, which include extreme value analysis, probabilistic and
statistical models, linear models, proximity-based models, information
theoretic models and highly dimensional outlier detection. Not all of these
groups apply to the time series data being considered here.</p>
      <p id="d1e2268">Fast Fourier transform (FFT) is a method commonly used to filter outliers
from the frequency domain. This is commonly utilised in data that have some
level of periodicity or seasonality. Unfortunately, at the short timescales
and spatial locations being considered for this application, ambient data do
not contain enough periodicity to be able to utilise this method effectively.
Nevertheless, an algorithm was tested which utilised standard FFT functions
in Python's NumPy library. Figure <xref ref-type="fig" rid="App1.Ch1.S1.F18"/>b shows the
effectiveness of the FFT algorithm, which was found to be useful for removing
some spikes in data caused by exhaust, but struggled during periods of
extended exhaust influence.</p>
      <p id="d1e2273">Generally speaking, environmental data are normally distributed. The
distributions of the data can be used to identify an exhaust population, and
all the major exhaust influence can be confidently removed using a simple
threshold filter. The threshold here becomes very clear when measuring in
pristine background conditions, but can become difficult to establish in
urban or continental air masses where ambient and exhaust air compositions
converge. Figure <xref ref-type="fig" rid="App1.Ch1.S1.F18"/>c shows the data resulting from
applying this informed threshold followed by a window filter that identifies
data periods within 20 min of an exhaust period as exhaust. Reasonable
exhaust removal is achieved compared to other outlier detection methods;
however significant exhaust influence remains.</p>
      <p id="d1e2279">The <inline-formula><mml:math id="M148" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>-score method is a way of describing data relative to its statistical
parameters. In the standard implementation, the <inline-formula><mml:math id="M149" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score of a particular
data point is calculated relative to its mean and standard deviation. This
obviously has issues if outliers are a dominant feature in a dataset since
the outliers significantly affect the mean and standard deviation. To improve
robustness, the modified <inline-formula><mml:math id="M150" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score compares data to medians and median
absolute deviations. In both cases, once the <inline-formula><mml:math id="M151" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score is calculated for each
data point, a simple threshold is utilised – that is, if the <inline-formula><mml:math id="M152" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score is
outside <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula> for modified <inline-formula><mml:math id="M155" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score), the data point is treated
as an outlier. In application to this dataset, as shown in
Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F18"/>d, this method functions simply as a threshold
filter, removing any data above a certain point, depending on the actual
chosen <inline-formula><mml:math id="M156" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>-score threshold. Applying this method to a rolling window, rather
than the full dataset, should improve its performance; however because the
rolling <inline-formula><mml:math id="M157" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>-score calculation tends to simply follow the median of the
dataset, its performance actually is not improved.</p>
      <p id="d1e2361">Double exponential smoothing is a method that creates a model of the data
based on exponentially weighted moving averages and linear regression, after
which the difference between model and measurements is calculated and
compared to a predefined threshold. The method was first described by
<xref ref-type="bibr" rid="bib1.bibx5" id="text.13"/> in 1957, but with recent advances which included seasonality
became popular in 2000 <xref ref-type="bibr" rid="bib1.bibx2" id="paren.14"/> because of its application in time
series data for network monitoring. The application of this method here is
ineffective in the first instance since it relies on an outlier-sensitive
method. However, when the model is calculated iteratively on a rolling
window, each measurement is determined to be an outlier or not in real time
and replaced, thus substantially increasing the performance of the algorithm
(Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F18"/>e). Despite its impressive performance, a
significant influence from exhaust persists in the filtered dataset.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F5" specific-use="star"><?xmltex \currentcnt{A1}?><label>Figure A1</label><caption><p id="d1e2374">Time series showing that periods of CCN elevated above background
values (typically less than 1000 <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) are associated with
elevated concentrations of the other parameters, or wind directions in the
exhaust sector. <bold>(a)</bold> CCN, <bold>(b)</bold> CN (left axis) and BC (right axis),
<bold>(c)</bold> <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> (left axis) and <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (right axis), and
<bold>(d)</bold> relative wind direction with the coloured region signifying
those directions in which exhaust is expected.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f05.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F6" specific-use="star"><?xmltex \currentcnt{A2}?><label>Figure A2</label><caption><p id="d1e2431">Time series (log scale) of <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, BC and CN for
45 d of voyage IN2016_V03, which traversed from the ice edge to the Equator
along the 170<inline-formula><mml:math id="M163" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W meridian with a short personnel exchange port
period in Wellington, New Zealand, on 26 May 2016. The green line in panel
<bold>(c)</bold> represents the BC limit of 0.07 <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> utilised.
This dataset was utilised for the algorithm development as it exhibits
influences from urban and background marine regions, by which differentiation
from ship exhaust must be achieved.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f06.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F7" specific-use="star"><?xmltex \currentcnt{A3}?><label>Figure A3</label><caption><p id="d1e2493">As in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F6"/> but with a linear <inline-formula><mml:math id="M165" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> scale to
reveal the baseline changes.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f07.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F8" specific-use="star"><?xmltex \currentcnt{A4}?><label>Figure A4</label><caption><p id="d1e2513">Voyage track of the data utilised in this voyage. Starting in
Hobart, Australia, the voyage's primary goal was to perform ocean sampling
along the 170<inline-formula><mml:math id="M166" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W longitudinal line, with a brief personnel
changeover in Wellington, New Zealand. This dataset was chosen as it
contained clean marine background, as well as periods when it had increasing
urban influence (as it travelled towards and arrived in Wellington), enabling
fine tuning of the algorithm to only remove platform exhaust.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f08.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F9" specific-use="star"><?xmltex \currentcnt{A5}?><label>Figure A5</label><caption><p id="d1e2533">A schematic of the ship, with the two exhaust pipes marked – the
main engine and the incinerator, along with the location of the main sampling
inlets and met instruments on the foremast. Measurements of aerosol
parameters (CN, BC and CCN) are carried out in the aerosol lab, while
greenhouse gas measurements (<inline-formula><mml:math id="M167" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are carried out in
the air chemistry lab. The compass on the bird's eye view is oriented to show
the wind direction as measured relative to the ship.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f09.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F10"><?xmltex \currentcnt{A6}?><label>Figure A6</label><caption><p id="d1e2563">Distribution of the MADs calculated from rolling through CN number
concentrations. <bold>(a)</bold> Box-and-whisker plot with quartiles drawn.
Whiskers represent the quartiles <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> times the interquartile range.
<bold>(b)</bold> Histogram. Note the split axis, which changes from linear to
logarithmic scaling.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f10.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F11"><?xmltex \currentcnt{A7}?><label>Figure A7</label><caption><p id="d1e2591">As in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F10"/> but for <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> mixing
ratios.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f11.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F12"><?xmltex \currentcnt{A8}?><label>Figure A8</label><caption><p id="d1e2612">As in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F10"/> but for <inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing
ratios.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f12.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F13" specific-use="star"><?xmltex \currentcnt{A9}?><label>Figure A9</label><caption><p id="d1e2636">CCN data (log scale) with the different combinations of the
algorithm applied separately: panels <bold>(a)</bold>–<bold>(f)</bold> show all two-parameter
combinations, panels <bold>(g)</bold>–<bold>(j)</bold> show three-parameter combinations,
panel <bold>(k)</bold> shows the filter using all four parameters and panel <bold>(l)</bold> shows
unfiltered data for comparison. Note that the window filter is not applied to
any of these plots.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f13.png"/>

      </fig>

      <?xmltex \floatpos{p}?><fig id="App1.Ch1.S1.F14" specific-use="star"><?xmltex \currentcnt{A10}?><label>Figure A10</label><caption><p id="d1e2666">Time series of 1 min of time-synchronised aerosol data.
Unfiltered data in red, with black markers showing exhaust-filtered data. The
exhaust is clearly identified in the CN data but due to differences in
instrument residence time, the exhaust signal shows up 10 s later in the CCN
data, in this case, after the exhaust signal has ceased in the CN. While it
is possible to align the underlying datasets based on an exhaust event,
rather than by time, application of this method is unsuitable for this
context because of the range of instrumentation where this exhaust product
would be utilised (and thus the range of responses), and because the window
filter applied after identification would result in a negligible
improvement.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f14.png"/>

      </fig>

      <?xmltex \floatpos{p}?><fig id="App1.Ch1.S1.F15" specific-use="star"><?xmltex \currentcnt{A11}?><label>Figure A11</label><caption><p id="d1e2678">Aerosol size distributions measured using a GRIMM SMPS with M-DMA
installed. Panel <bold>(a)</bold> shows all raw data recorded, while the wind-based
filter and the exhaust algorithm are applied to the two subsequent graphs
<bold>(b, c)</bold> respectively, removing periods identified as sampling
exhaust.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f15.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F16"><?xmltex \currentcnt{A12}?><label>Figure A12</label><caption><p id="d1e2695">As in Fig. <xref ref-type="fig" rid="Ch1.F2"/> but with the filtered dataset
(blue) being the wind-based method. Unfiltered data are shown in red.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f16.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F17"><?xmltex \currentcnt{A13}?><label>Figure A13</label><caption><p id="d1e2708">As in Fig. <xref ref-type="fig" rid="Ch1.F2"/> but plotted against relative
wind direction. Unfiltered data are shown in red, while data with the
respective exhaust filter are shown in black.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f17.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F18"><?xmltex \currentcnt{A14}?><label>Figure A14</label><caption><p id="d1e2721">A subset of CN during the voyage with a range of outlier detection
methods applied. <bold>(a)</bold> Raw CN data. <bold>(b)</bold> Fast Fourier
transform (FFT). <bold>(c)</bold> Normal distribution filter.
<bold>(d)</bold> <inline-formula><mml:math id="M172" display="inline"><mml:mi>Z</mml:mi></mml:math></inline-formula> scores: in red the standard method is applied to the whole
population (S.P.); in black, the modified <inline-formula><mml:math id="M173" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score is applied to the whole
population (M.P.); in blue, the modified <inline-formula><mml:math id="M174" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> score is applied to a rolling
window. <bold>(e)</bold> Double exponential smoothing. <bold>(f)</bold> The median-based method developed in this paper.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/12/3019/2019/amt-12-3019-2019-f18.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e2776">RSH developed  the algorithm and led the writing of
the paper. All authors contributed to the writing of the paper. IMM
and WAP oversaw the daily instrument maintenance, while RSH, PBK, ZL, MDK and
JPW were lead scientists maintaining the calibration and annual maintenance
of instrumentation. JH, IMM and WAP developed and installed much of the
infrastructure for all instrumentation.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e2782">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e2788">The authors would like to thank the Marine National Facility for providing
the infrastructure and logistical and financial support for the ongoing
measurements on the vessel.</p></ack><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e2793">This paper was edited by Wiebke Frey and reviewed by two
anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

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S. B., Klekociuk, A. R., Johnston, P. V., Kreher, K., Thomas, A. J.,
Robinson, A. D., Harris, N. R. P., Johnson, R., and Wilson, S. R.: Boundary
layer new particle formation over East Antarctic sea ice – possible
Hg-driven nucleation?, Atmos. Chem. Phys., 15, 13339–13364,
<ext-link xlink:href="https://doi.org/10.5194/acp-15-13339-2015" ext-link-type="DOI">10.5194/acp-15-13339-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Humphries et al.(2018)</label><mixed-citation>Humphries, R. S., McRobert, I., Ward, J., Keywood, M. D., Loh, Z., Krummel,
P. B., and Harnwell, J.: Exhaust identification data from IN2016_V03, data set,
<ext-link xlink:href="https://doi.org/10.4225/08/5b39a08a00bb5" ext-link-type="DOI">10.4225/08/5b39a08a00bb5</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Johnke(1999)</label><mixed-citation>Johnke, B.: Emissions from waste incineration, Background paper for Good
Practice Guidance and Uncertainty Management in National Greenhouse Gas
Inventories, available at: <uri>https://www.ipcc-nggip.iges.or.jp/public/gp/bgp/5_3_Waste_Incineration.pdf</uri> (last access: 2 July 2018), 1999.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Jones and Harrison(2016)</label><mixed-citation>Jones, A. M. and Harrison, R. M.: Emission of ultrafine particles from the
incineration of municipal solid waste: A review, Atmos. Environ.,
140, 519–528, <ext-link xlink:href="https://doi.org/10.1016/J.ATMOSENV.2016.06.005" ext-link-type="DOI">10.1016/J.ATMOSENV.2016.06.005</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Leys et al.(2013)</label><mixed-citation>Leys, C., Ley, C., Klein, O., Bernard, P., and Licata, L.: Detecting
outliers:
Do not use standard deviation around the mean, use absolute deviation around
the median, J. Exp. Soc. Psy., 49, 764–766, <ext-link xlink:href="https://doi.org/10.1016/j.jesp.2013.03.013" ext-link-type="DOI">10.1016/j.jesp.2013.03.013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Marine National Facility(2016)</label><mixed-citation>Marine National Facility: RV Investigator IN2016_V03 Data Survey,
available at: <uri>http://www.cmar.csiro.au/data/underway/?survey=in2016_v03</uri> (last access: 2 July 2018),
2016.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Molloy and Galbally(2014)</label><mixed-citation>Molloy, S. B. and Galbally, I. E.: Analysis and identification of a suitable
baseline definition for tropospheric ozone at Cape Grim, Tasmania, Baseline
Atmospheric Program (Australia) 2009–2010,  7–16,
available at: <uri>http://www.bom.gov.au/inside/cgbaps/baseline/Baseline_2009-2010.pdf</uri> (last access: 2 July 2018), 2014.</mixed-citation></ref>
      <ref id="bib1.bibx13"><?xmltex \def\ref@label{{Re\c{s}ito\u{g}lu et~al.(2015)}}?><label>Reşitoğlu et al.(2015)</label><mixed-citation>Reşitoğlu, B. A., Altinişik, K., and Keskin, A.: The pollutant
emissions
from diesel-engine vehicles and exhaust aftertreatment systems, Clean
Tech. Environ. Pol., 17, 15–27,
<ext-link xlink:href="https://doi.org/10.1007/s10098-014-0793-9" ext-link-type="DOI">10.1007/s10098-014-0793-9</ext-link>, 2015.</mixed-citation></ref>
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Deviation, J. Am. Stat. Assoc., 88, 1273–1283,
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Seinfeld, J. H. and Pandis, S.: Atmospheric Chemistry and Physics: From Air
Pollution to Climate Change, 3rd edn., ISBN 978-1-118-94740-1, John Wiley &amp; Sons, Hoboken,
2016.</mixed-citation></ref>
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L. W., Baly, S. B., Langenfelds, R. L., and Cooper, L. N.: Baseline carbon
dioxide monitoring, available at: <uri>http://www.bom.gov.au/inside/cgbaps/baseline/Baseline_1999-2000.pdf</uri> (last access: 2 July 2018), Tech. rep., 2003.</mixed-citation></ref>
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  </ref-list></back>
    <!--<article-title-html>Identification of platform exhaust on the RV <i>Investigator</i></article-title-html>
<abstract-html><p>Oceans cover over
70&thinsp;% of the Earth's surface. Ship-based measurements are an important
component in developing an understanding of atmosphere of this vast region. A
common problem that impacts the quality of atmospheric data collected from
marine research vessels is exhaust from both diesel combustion and waste
incineration from the ship itself. Described here is an algorithm, developed
for the recently commissioned Australian blue-water research vessel (RV)
<i>Investigator</i>, that identifies exhaust periods in sampled air. The RV
<i>Investigator</i>, with two dedicated atmospheric laboratories,
represents an unprecedented opportunity for high-quality measurements of the
marine atmosphere. The algorithm avoids using ancillary data such as wind
speed and direction, and instead utilises components of the exhaust itself –
aerosol number concentration, black carbon concentration, and carbon monoxide
and carbon dioxide mixing ratios. The exhaust signal is identified within
each of these parameters individually before they are combined and an
additional window filter is applied. The algorithm relies heavily on
statistical methods, rather than setting thresholds that are too rigid to
accommodate potential temporal changes. The algorithm is more effective than
traditional wind-based filters in removing exhaust data without removing
exhaust-free data, which commonly occurs with traditional filters. In
application to the current dataset, the algorithm identifies 26&thinsp;% of the
wind filter's <q>clean</q> data as exhaust, and recovers 5&thinsp;% of data falsely
removed by the wind filter. With suitable testing, the algorithm has the
potential to be applied to other ship-based atmospheric measurements where
suitable measurements exist.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Aggarwal(2013)</label><mixed-citation>
Aggarwal, C. C.: Outlier Analysis, Springer New York, New York, NY,
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</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Brutlag(2000)</label><mixed-citation>
Brutlag, J. D.: Aberrant Behavior Detection in Time Series for Network
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</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Cape et al.(2012)</label><mixed-citation>
Cape, J., Coyle, M., and Dumitrean, P.: The atmospheric lifetime of black
carbon, Atmos. Environ., 59, 256–263,
<a href="https://doi.org/10.1016/j.atmosenv.2012.05.030" target="_blank">https://doi.org/10.1016/j.atmosenv.2012.05.030</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Chambers et al.(2017)</label><mixed-citation>
Chambers, S. D., Williams, A. G., Crawford, J., Griffiths, A. D., Krummel,
P. B., Steele, L. P., Law, R. M., van der Schoot, M. V., Galbally, I. E., and
Molloy, S. B.: A radon-only technique for characterising atmospheric
“baseline” constituent concentrations at Cape Grim, edited by: Derek, N., Krummel, P. B. and Cleland, S. J., Tech. rep.,
2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Holt(2004)</label><mixed-citation>
Holt, C. C.: Forecasting seasonals and trends by exponentially weighted
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averages, Int. J. Forecast., 20, 5–10,
<a href="https://doi.org/10.1016/j.ijforecast.2003.09.015" target="_blank">https://doi.org/10.1016/j.ijforecast.2003.09.015</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Humphries et al.(2015)</label><mixed-citation>
Humphries, R. S., Schofield, R., Keywood, M. D., Ward, J., Pierce, J. R.,
Gionfriddo, C. M., Tate, M. T., Krabbenhoft, D. P., Galbally, I. E., Molloy,
S. B., Klekociuk, A. R., Johnston, P. V., Kreher, K., Thomas, A. J.,
Robinson, A. D., Harris, N. R. P., Johnson, R., and Wilson, S. R.: Boundary
layer new particle formation over East Antarctic sea ice – possible
Hg-driven nucleation?, Atmos. Chem. Phys., 15, 13339–13364,
<a href="https://doi.org/10.5194/acp-15-13339-2015" target="_blank">https://doi.org/10.5194/acp-15-13339-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Humphries et al.(2018)</label><mixed-citation>
Humphries, R. S., McRobert, I., Ward, J., Keywood, M. D., Loh, Z., Krummel,
P. B., and Harnwell, J.: Exhaust identification data from IN2016_V03, data set,
<a href="https://doi.org/10.4225/08/5b39a08a00bb5" target="_blank">https://doi.org/10.4225/08/5b39a08a00bb5</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Johnke(1999)</label><mixed-citation>
Johnke, B.: Emissions from waste incineration, Background paper for Good
Practice Guidance and Uncertainty Management in National Greenhouse Gas
Inventories, available at: <a href="https://www.ipcc-nggip.iges.or.jp/public/gp/bgp/5_3_Waste_Incineration.pdf" target="_blank">https://www.ipcc-nggip.iges.or.jp/public/gp/bgp/5_3_Waste_Incineration.pdf</a> (last access: 2 July 2018), 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Jones and Harrison(2016)</label><mixed-citation>
Jones, A. M. and Harrison, R. M.: Emission of ultrafine particles from the
incineration of municipal solid waste: A review, Atmos. Environ.,
140, 519–528, <a href="https://doi.org/10.1016/J.ATMOSENV.2016.06.005" target="_blank">https://doi.org/10.1016/J.ATMOSENV.2016.06.005</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Leys et al.(2013)</label><mixed-citation>
Leys, C., Ley, C., Klein, O., Bernard, P., and Licata, L.: Detecting
outliers:
Do not use standard deviation around the mean, use absolute deviation around
the median, J. Exp. Soc. Psy., 49, 764–766, <a href="https://doi.org/10.1016/j.jesp.2013.03.013" target="_blank">https://doi.org/10.1016/j.jesp.2013.03.013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Marine National Facility(2016)</label><mixed-citation>
Marine National Facility: RV Investigator IN2016_V03 Data Survey,
available at: <a href="http://www.cmar.csiro.au/data/underway/?survey=in2016_v03" target="_blank">http://www.cmar.csiro.au/data/underway/?survey=in2016_v03</a> (last access: 2 July 2018),
2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Molloy and Galbally(2014)</label><mixed-citation>
Molloy, S. B. and Galbally, I. E.: Analysis and identification of a suitable
baseline definition for tropospheric ozone at Cape Grim, Tasmania, Baseline
Atmospheric Program (Australia) 2009–2010,  7–16,
available at: <a href="http://www.bom.gov.au/inside/cgbaps/baseline/Baseline_2009-2010.pdf" target="_blank">http://www.bom.gov.au/inside/cgbaps/baseline/Baseline_2009-2010.pdf</a> (last access: 2 July 2018), 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Reşitoğlu et al.(2015)</label><mixed-citation>
Reşitoğlu, B. A., Altinişik, K., and Keskin, A.: The pollutant
emissions
from diesel-engine vehicles and exhaust aftertreatment systems, Clean
Tech. Environ. Pol., 17, 15–27,
<a href="https://doi.org/10.1007/s10098-014-0793-9" target="_blank">https://doi.org/10.1007/s10098-014-0793-9</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Rousseeuw and Croux(1993)</label><mixed-citation>
Rousseeuw, P. J. and Croux, C.: Alternatives to the Median Absolute
Deviation, J. Am. Stat. Assoc., 88, 1273–1283,
<a href="https://doi.org/10.1080/01621459.1993.10476408" target="_blank">https://doi.org/10.1080/01621459.1993.10476408</a>, 1993.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Seinfeld, and Pandis(2016)</label><mixed-citation>
Seinfeld, J. H. and Pandis, S.: Atmospheric Chemistry and Physics: From Air
Pollution to Climate Change, 3rd edn., ISBN 978-1-118-94740-1, John Wiley &amp; Sons, Hoboken,
2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Steele et al.(2003)</label><mixed-citation>
Steele, L. P., Krummel, P. B., Da Costa, G. A., Spencer, D. A., Porter,
L. W., Baly, S. B., Langenfelds, R. L., and Cooper, L. N.: Baseline carbon
dioxide monitoring, available at: <a href="http://www.bom.gov.au/inside/cgbaps/baseline/Baseline_1999-2000.pdf" target="_blank">http://www.bom.gov.au/inside/cgbaps/baseline/Baseline_1999-2000.pdf</a> (last access: 2 July 2018), Tech. rep., 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>World Meteorological Organization(1985)</label><mixed-citation>
World Meteorological Organization (WMO): Atmospheric Ozone 1985, Tech.
rep.,
available at: <a href="https://www.esrl.noaa.gov/csd/assessments/ozone/1985/report.html" target="_blank">https://www.esrl.noaa.gov/csd/assessments/ozone/1985/report.html</a> (last access: 2 July 2018), 1985.
</mixed-citation></ref-html>--></article>
