<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">AMT</journal-id><journal-title-group>
    <journal-title>Atmospheric Measurement Techniques</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1867-8548</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-13-7025-2020</article-id><title-group><article-title>Cirrus cloud shape detection by tomographic extinction retrievals from
infrared limb emission sounder measurements</article-title><alt-title>Tomographic extinction retrieval</alt-title>
      </title-group><?xmltex \runningtitle{Tomographic extinction retrieval}?><?xmltex \runningauthor{J.~Ungermann et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Ungermann</surname><given-names>Jörn</given-names></name>
          <email>j.ungermann@fz-juelich.de</email>
        <ext-link>https://orcid.org/0000-0001-9095-8332</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Bartolome</surname><given-names>Irene</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7447-4127</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Griessbach</surname><given-names>Sabine</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3792-3573</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Spang</surname><given-names>Reinhold</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2483-5761</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Rolf</surname><given-names>Christian</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5329-0054</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Krämer</surname><given-names>Martina</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2888-1722</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Höpfner</surname><given-names>Michael</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4174-9531</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Riese</surname><given-names>Martin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6398-6493</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>IEK-7, Forschungszentrum Jülich GmbH, Jülich, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>JARA, Forschungszentrum Jülich GmbH, Jülich, Germany</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Jülich Supercomputing Centre, Forschungszentrum Jülich GmbH, Jülich, Germany</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>IMK, Karlsruher Institut für Technologie, Karlsruhe, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jörn Ungermann (j.ungermann@fz-juelich.de)</corresp></author-notes><pub-date><day>21</day><month>December</month><year>2020</year></pub-date>
      
      <volume>13</volume>
      <issue>12</issue>
      <fpage>7025</fpage><lpage>7045</lpage>
      <history>
        <date date-type="received"><day>26</day><month>June</month><year>2020</year></date>
           <date date-type="rev-request"><day>13</day><month>July</month><year>2020</year></date>
           <date date-type="rev-recd"><day>16</day><month>October</month><year>2020</year></date>
           <date date-type="accepted"><day>29</day><month>October</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2020 Jörn Ungermann et al.</copyright-statement>
        <copyright-year>2020</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020.html">This article is available from https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020.html</self-uri><self-uri xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e164">An improved cloud-index-based method for the detection of clouds in limb    sounder data is presented that exploits the spatial overlap of measurements    to more precisely detect the location of (optically thin) clouds. A second    method based on a tomographic extinction retrieval is also presented. Using    CALIPSO data and a generic advanced infrared limb imaging instrument as    examples for a synthetic study, the new cloud index method has a better    horizontal resolution in comparison to the traditional cloud index and has a reduction of false positive cloud detection events by about 30 %. The results for the extinction retrieval even show an improvement of 60 %. In a second step, the extinction retrieval is applied to real 3-D    measurements of the airborne Gimballed Limb Observer for Radiance Imaging in the Atmosphere (GLORIA) taken during the    Wave-driven ISentropic Exchange (WISE) campaign to retrieve small-scale    cirrus clouds with high spatial accuracy.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e176">Clouds, and in particular cirrus clouds, play an important part in the radiative
balance of the atmosphere. The effect of cirrus clouds in a changing climate is
still uncertain, even though a change in frequency of occurrence is well
established due to a redistribution of water vapor in the troposphere
<xref ref-type="bibr" rid="bib1.bibx22 bib1.bibx19" id="paren.1"/>.</p>
      <p id="d1e182">To increase our understanding of cirrus clouds, rigorous observations are required
on their frequency, occurrence, coverage, particle sizes, number concentration,
ice water content, and altitude. To generate a sufficient statistical basis for
modeling and validation, global measurements of cirrus clouds are required,
which can only be generated by satellite-borne instruments
<xref ref-type="bibr" rid="bib1.bibx29" id="paren.2"><named-content content-type="pre">e.g.,</named-content></xref>. Owing to the dryness of the upper
troposphere, cirrus clouds often generate only weak signatures in observations
by remote sensing instruments, especially nadir-viewing ones. Our knowledge
about clouds has been advanced greatly in recent times by the active lidar
Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) on Cloud-Aerosol Lidar
and Infrared Pathfinder Satellite Observation (CALIPSO; <xref ref-type="bibr" rid="bib1.bibx63" id="altparen.3"/>). Due
to its active nature, it is the most highly resolving and precise satellite
instrument with a cirrus cloud product that has been used successfully to create
first climatologies <xref ref-type="bibr" rid="bib1.bibx38" id="paren.4"/>. Other, passive, nadir-viewing
instruments often have difficulty detecting ultra-thin cirrus or properly
determining the top altitude of the clouds with the necessary accuracy to
determine, e.g., the radiative effects. While some advances have been made
recently, e.g., by <xref ref-type="bibr" rid="bib1.bibx28" id="text.5"/>, using data from the SEVIRI instrument on MSG
(Meteosat Second Generation; <xref ref-type="bibr" rid="bib1.bibx45" id="altparen.6"/>), these data products
currently lack proper error estimates due to the nature of the
classification algorithms used. The most sensitive passive methods to detect cirrus from space
are in any case provided by limb-observing instruments. As cirrus clouds are
typically horizontally more elongated than vertically, a limb-viewing instrument
has a longer path within the cloud, generating a stronger signal and also a much
higher<?pagebreak page7026?> vertical resolution. This is true for both occultation and passive
emission measuring instruments. While occultation instruments are even more
sensitive, passive instruments have the advantage of a much higher measurement
density necessary to generate a profound global statistical basis. A historical
disadvantage of limb sounders is a poor horizontal resolution compared to nadir-viewing ones, but recent developments of tomographic evaluation schemes in
combination with proposed instruments with a higher measurement density level
the playing field <xref ref-type="bibr" rid="bib1.bibx17" id="paren.7"/>.</p>
      <p id="d1e206">While tomographic retrievals have become state of the art for limb sounders in
general
<xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx3 bib1.bibx53 bib1.bibx33 bib1.bibx5" id="paren.8"><named-content content-type="pre">e.g.,</named-content></xref>,
in-orbit instruments do not oversample extensively; e.g., the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) instrument
on ENVISAT <xref ref-type="bibr" rid="bib1.bibx9" id="paren.9"/> was operated to have nonoverlapping lines of sight in the tangent layer in nominal measurement
modes. Tomography was, due
to instrument limitations, mostly performed to increase the retrieval accuracy
in the presence of gradients in retrieved quantities along the line of sight.
Hence, this study evaluates the potential capabilities of near-future limb
sounders, employing imaging detectors with a much higher measurement density,
simply called IRLS (Imaging IR Limb Sounder) in this study. The
hypothetical instrument is largely based on the PREMIER IRLS instrument
(Process Exploration through Measurement of infrared and millimeter-wave
Emitted Radiation; <xref ref-type="bibr" rid="bib1.bibx55 bib1.bibx8" id="altparen.10"/>), proposed for ESA's
Earth Explorer program.</p>
      <p id="d1e220">The cloud index is a well proven method for the detection of clouds in infrared spectra <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx49 bib1.bibx50" id="paren.11"/>. We show how the spatial resolution and accuracy of the cloud index method can be improved upon by the so-called oversampling, where limb sounders measure spectra so frequently that the lines of sight of succeeding measurements overlap
within the tangent layer. In addition to an enhancement of the cloud index
method, we also investigate the capabilities of a tomographic extinction
retrieval that employs the same techniques also used for the tomographic
retrieval of temperature and trace gases. Previous studies have shown that
tomographic methods can increase the horizontal resolution of data products
gained from limb sounders, ideally up to the spacing between consecutive
measurements <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx56 bib1.bibx31" id="paren.12"/>. Here, we want to investigate
how that result typically valid for optically thin conditions transfers itself
to optically thicker clouds. To complement the work with synthetic measurements,
the final part of this paper applies the extinction tomography to evaluate a
tomographic measurement of cirrus clouds made by the Gimballed Limb Observer for Radiance Imaging in the Atmosphere (GLORIA)
<xref ref-type="bibr" rid="bib1.bibx44 bib1.bibx10" id="paren.13"/>. This airborne instrument points at a
90<inline-formula><mml:math id="M1" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> angle in relation to the heading of its carrier and thus has a very
different measurement geometry compared to along-track-pointing satellite
instruments. In this sense it is a very hard test case for the method as this
geometry makes the retrieval much more involved and complicated.</p>
      <p id="d1e242">This paper is structured as follows. We will first briefly present the employed data products and the models and instruments they were derived from.
Section <xref ref-type="sec" rid="Ch1.S3"/> presents the new algorithms and methods that are then studied in depth in Sect. <xref ref-type="sec" rid="Ch1.S4"/>. We conclude with a first 3-D tomographic cloud retrieval based on real GLORIA measurements in
Sect. <xref ref-type="sec" rid="Ch1.S5"/>.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Instruments and data</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>MIPAS</title>
      <p id="d1e266">The Michelson Interferometer for Passive Atmospheric Sounding (MIPAS;
<xref ref-type="bibr" rid="bib1.bibx9" id="altparen.14"/>) was an infrared Fourier-transform spectrometer (FTS) aboard
the ESA satellite Envisat. It measured the spectral range from
685 to 2410 <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, with a spectral resolution of up to
0.025 <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. We employ here the reduced (or optimized) spectral resolution of
0.0625 <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> that was used in the majority of its operational years.
Similarly, we employ the vertical sampling of
<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> in the upper troposphere–lower stratosphere (UTLS), which was mostly used from 2005 till the end of
operation in 2012 (RR27/nominal mode). We assume for the synthetic
simulation of MIPAS measurements a horizontal sampling of 420 <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> that
was used in the period from 2005–2012 and the vertical field of view, which has a full width at half maximum of roughly 0.06<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (equivalent to about 3 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> vertically; e.g., <xref ref-type="bibr" rid="bib1.bibx58" id="altparen.15"/>).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>GLORIA and IRLS</title>
      <p id="d1e369">The Gimballed Limb Observer for Radiance Imaging in the Atmosphere (GLORIA;
<xref ref-type="bibr" rid="bib1.bibx44 bib1.bibx10" id="altparen.16"/>) is an airborne imaging
Fourier-transform spectrometer capable of acquiring more than
6000 interferograms with its <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mn mathvariant="normal">128</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">48</mml:mn></mml:mrow></mml:math></inline-formula> detector pixels used in less than 2 s. This enables it to measure a full atmospheric profile at once. The horizontal dimension across the line of sight is currently only used to increase the signal-to-noise ratio by averaging but could be
exploited as well, e.g., for imaging small-scale cloud structures. The
interferogram acquisition time can be adjusted between fast measurements with coarse spectral resolution and slow measurements with a high spectral resolution over the effective spectral range from 780 to
1400 <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx26" id="paren.17"/>. The spectral sampling is
configurable between 0.625 <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (roughly 2 <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> acquisition time) and 0.0625 <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (roughly 10 <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> acquisition time). The effective spectral resolution is roughly a factor of 2 worse than the sampling due to the employed Norton–Beer apodization <xref ref-type="bibr" rid="bib1.bibx39" id="paren.18"/>. A unique feature of GLORIA is its
capability to point the instrument towards different directions relative to the aircraft heading. This allows for the measurement of air masses at an angle between 45<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">132</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> with respect to the flight direction. By<?pagebreak page7027?> constantly
panning the instrument over the available angles, the same air masses are
measured from multiple directions, which enables the tomographic reconstruction of three-dimensional structures <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx30 bib1.bibx31" id="paren.19"/>. In addition to the IR instrument, there is also a standard camera with three channels (red/green/blue) operating in the visible range that observes a much wider field of view.</p>
      <p id="d1e483">GLORIA has been operated successfully during multiple campaigns on both the German HALO research aircraft and the Russian M-55 Geophysica. The measurements discussed later were taken on 18 September 2017 during the Wave-driven ISentropic Exchange (WISE) campaign based in Shannon, Ireland.</p>
      <p id="d1e486">The Imaging IR Limb Sounder (IRLS) is a concept for an Earth-observing
satellite instrument that was originally proposed for the ESA's seventh Earth
Explorer program. It is, effectively, a GLORIA-like instrument in space with a
fixed viewing direction backwards compared to its flight direction. This
configuration also allows for the tomographic 3-D reconstruction of the measured
atmosphere. While the PREMIER IRLS offered higher spectral resolutions, we
focus here on the spatial capabilities and thus assume a spectral sampling of 1.25 <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and 15 horizontal measurement tracks covering <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, as well as an along-track sampling of 50 <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. For
the vertical sampling, we assume a pixel pitch of 0.014<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, which
corresponds roughly to a vertical sampling of <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">700</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in the
troposphere. These capabilities are in line with those of the GLORIA instrument and thus certainly achievable. They correspond to the “dynamics mode”, which
was envisioned to be used for about half of the instrument measurement time; its primary purpose was a high spatial resolution to reveal processes associated with mixing and convective outflow in the UTLS, as well as three-dimensionally resolving gravity waves to determine momentum fluxes driving global circulation systems <xref ref-type="bibr" rid="bib1.bibx8" id="paren.20"/>.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>CALIOP</title>
      <p id="d1e568">The Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP;
<xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx63" id="altparen.21"/>) is a nadir-viewing lidar on the CALIPSO satellite, which is part of NASA's A-Train. CALIOP provides high-resolution vertical profiles of cloud and aerosol properties, with a vertical resolution of 60 <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> below 20.2 km and 180 m above and an along-track resolution of 5 km. We used cloud extinction data from the L2CPro V3.01 product files <xref ref-type="bibr" rid="bib1.bibx2" id="paren.22"/> of the full month of December 2009 to generate test cases of realistic 2-D cloud scenes for the limb-viewing geometry using a radiative transfer model (see Sect. <xref ref-type="sec" rid="Ch1.S3"/>). In addition to the given extinction values, we also used a data set for which we reduced the supplied extinction
values by an order of magnitude. This allows us to explore the sensitivity of
limb sounders with respect to clouds that are thinner than those present in
CALIOP level 2 products.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>ECMWF</title>
      <p id="d1e595">For pressure and temperature in the cloud scene simulations based on CALIOP data
and as a priori in all retrievals, ERA-Interim data provided by the European Centre for Medium-Range Weather Forecasts (ECMWF; <xref ref-type="bibr" rid="bib1.bibx6" id="altparen.23"/>) were employed. The model data are available in 6 h time steps with the T255/L60 resolution, which corresponds to a horizontal sampling of <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. Quadrilinear interpolation is used for resampling the model onto the needed grids, whereby pressure is interpolated in log space. The horizontal wind speeds and diabatic heating rates from the ECMWF ERA-Interim data were also used for the calculation of backward trajectories using the Chemical Lagrangian Model of the Stratosphere (CLaMS) model introduced in the next section.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>CLaMS-ICE</title>
      <p id="d1e628">As CALIOP only provides vertical 2-D slices, we turned towards simulations
generated by the Chemical Lagrangian Model of the Stratosphere (CLaMS;
<xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx27 bib1.bibx42" id="altparen.24"/>) for providing realistic 3-D
cloud structures. The CLaMS-ICE module <xref ref-type="bibr" rid="bib1.bibx35" id="paren.25"/> includes a
double-moment bulk microphysics scheme for modeling cirrus clouds <xref ref-type="bibr" rid="bib1.bibx52" id="paren.26"><named-content content-type="pre">i.e., ice water content and ice crystal number;</named-content></xref>. The box model
runs in a forward direction on backward trajectories (24 h) started from
points on a regular grid with user-defined resolution and extent in longitude, latitude, and pressure space. A resolution 0.25<inline-formula><mml:math id="M29" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in the horizontal and 0.5 <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> in the vertical domain is used for resolving finer cirrus structures compared to the original ERA-Interim resolution. For initialization, cloud ice water content and specific humidity from ERA-Interim are spatially interpolated to the CLaMS-ICE starting point of each individual trajectory.</p>
      <p id="d1e659">The trajectories are calculated on hybrid potential temperature coordinates, which allows transport processes to be resolved in the troposphere that are influenced by the orography and transport processes in the stratosphere, where adiabatic horizontal transport dominates.</p>
      <p id="d1e662">To reduce the computational effort of the radiative transfer model, we transform the ice water content and radius information supplied by the CLaMS-ICE module to a simple extinction coefficient by the formula of <xref ref-type="bibr" rid="bib1.bibx11" id="text.27"/>:
            <disp-formula id="Ch1.Ex1"><mml:math id="M31" display="block"><mml:mrow><mml:mi>E</mml:mi><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mo>⋅</mml:mo><mml:mi>I</mml:mi><mml:mo>⋅</mml:mo><mml:msup><mml:mi>R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          with <inline-formula><mml:math id="M32" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula> being extinction in <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> at 804 <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">mm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M37" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> the ice water content in <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">gm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M39" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> the radius of particles in <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<?pagebreak page7028?><sec id="Ch1.S3">
  <label>3</label><title>Methods</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>JURASSIC2</title>
      <p id="d1e813">This paper employs the JUelich RApid Spectral Simulation Code version 2
(JURASSIC2), which is a radiative transfer code optimized for large-scale and
tomographic simulations and retrievals <xref ref-type="bibr" rid="bib1.bibx20" id="paren.28"/>. It includes
capabilities from computing spectrally resolved radiances line by line to using
spectrally averaged lookup tables for extremely fast computations. The
algorithmic adjoint model allows for its efficient use in retrieval schemes
(employing the JUelich Tomographic Inversion Library; JUTIL) and data
assimilation in general. JURASSIC2 has been exemplarily used for the analysis of
CRISTA-NF data <xref ref-type="bibr" rid="bib1.bibx24" id="paren.29"><named-content content-type="pre">e.g.,</named-content></xref>, for the study of clouds and
aerosol using MIPAS data <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx14" id="paren.30"><named-content content-type="pre">e.g.,</named-content></xref>, for the operational processing for the GLORIA instrument <xref ref-type="bibr" rid="bib1.bibx57" id="paren.31"><named-content content-type="post">e.g.,</named-content></xref>, and for studies on the aerosol layer in the Asian Summer Monsoon <xref ref-type="bibr" rid="bib1.bibx21" id="paren.32"/>.</p>
      <p id="d1e837">In this study, the emissivity growth approximation <xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx12" id="paren.33"><named-content content-type="pre">e.g.,</named-content></xref> is used in combination with
precalculated lookup tables of optical path (also called optical depth or thickness) in relation to temperature, pressure, and volume mixing ratio to quickly compute radiances and derivatives with respect to temperature in a discrete representation of the atmosphere. The tables were computed using a
line-by-line model <xref ref-type="bibr" rid="bib1.bibx7" id="paren.34"/> convolved with the respective instrument
line shapes, which for FTSs mostly depend on the interferogram
length and apodization employed.</p>
      <p id="d1e848">JURASSIC2 is also used to compute lines of sight and tangent points in this study using a simple refraction scheme by <xref ref-type="bibr" rid="bib1.bibx18" id="text.35"/>.</p>
      <p id="d1e854">Simulations with JURASSIC2 for MIPAS-like and IRLS spectra employed the trace
gases <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CFC</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">11</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
with climatological values <xref ref-type="bibr" rid="bib1.bibx43" id="paren.36"/>. A ray-tracing step length of 5 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> was employed. For both MIPAS-like and IRLS measurements, the spectral samples from 787.50 to 796.25 <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and from 831.25 to 835.00 <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> were used, albeit with
different spectral sampling for each instrument of 0.0625 and 1.25 <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, respectively, and a strong Norton–Beer apodization <xref ref-type="bibr" rid="bib1.bibx1" id="paren.37"/>. We simulated synthetic MIPAS-like and IRLS radiances for all CALIOP extinctions of December 2009 and these microwindows.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Cloud index</title>
      <p id="d1e980">A practical method for identifying a radiance measurement of a cloud is the so-called cloud index (CI), first introduced by <xref ref-type="bibr" rid="bib1.bibx48" id="text.38"/>. The CI is a color ratio, defined as the ratio between the radiance averaged over a spectral region with a strong emission feature,
such as the <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> Q branch at 12.6 <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, and the radiance
averaged over an atmospheric window, such as the one located at 12 <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. It is a dimensionless quantity with a slight dependence on latitude and season. For given tangent point altitudes, one can derive specific thresholds that separate cloudy measurements from others. Typical CI values in cloudy conditions  are between
1.1 and 6 <xref ref-type="bibr" rid="bib1.bibx46 bib1.bibx50 bib1.bibx51" id="paren.39"/>. The lowest detectable extinction from a space-based limb emission measurement within the atmospheric window at 833 <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is of the order of <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M55" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx46" id="paren.40"/>. For IR limb emission measurements the clouds are termed optically thick when the CI profile at and below cloud altitude runs into saturation, which occurs for extinctions of <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and higher <xref ref-type="bibr" rid="bib1.bibx15" id="paren.41"/>. Here, we employ altitude-dependent thresholds of <xref ref-type="bibr" rid="bib1.bibx46" id="text.42"/> to determine if an index indicates a cloud. For optically thin conditions, the CI correlates well with
extinction and the integrated volume density or area density path along the limb path <xref ref-type="bibr" rid="bib1.bibx50" id="paren.43"/>. The latter differentiation depends on the particle radius range, where larger median radii, typical of ice clouds, correlate with the area density. Although the CI approach is an effective and computational cheap detection mechanism for thin and thick clouds, its information content is limited when retrieving cloud information below the cloud top, as clouds affect the CI of clear air below, and hence, the cloud detection thresholds are not effective in distinguishing clear air from cloud below the cloud top.</p>
      <p id="d1e1110">The cloud index is also sensitive to an increased aerosol load such as that caused by, e.g., volcanic eruptions, wild fires, or dust storms. The highly sensitive altitude-dependent CI thresholds will certainly also detect enhanced aerosol levels. Using additional detection and classification methods <xref ref-type="bibr" rid="bib1.bibx15" id="paren.44"><named-content content-type="pre">e.g.,</named-content></xref> can provide a distinction between ice clouds and aerosols with a different spectral signature. The synthetic studies below disregard aerosols for simplicity's sake.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Cloud extent retrieval</title>
      <?pagebreak page7029?><p id="d1e1126">This section describes two different approaches to the spatial detection of ice clouds from measured infrared limb spectra. The first approach builds on the CI method <xref ref-type="bibr" rid="bib1.bibx50" id="paren.45"><named-content content-type="pre">e.g.,</named-content></xref>, which can detect the presence of a cloud in a measured spectrum. Previous satellite instruments, such as MIPAS-Envisat <xref ref-type="bibr" rid="bib1.bibx9" id="paren.46"/>, have a comparatively coarse measurement pattern, where individual lines of sight of measured spectra do not usefully intersect (at least in the most common operation modes). Figure <xref ref-type="fig" rid="Ch1.F1"/> shows the lines of sight of measurements of a MIPAS-like instrument and the assumed
IRLS. At lower altitudes, the lines of sight of MIPAS do not overlap at all
in the tangent layer. In contrast, the IRLS has a very fine measurement grid, where many lines of sight overlap to the extent that the lines of sight of the immediately neighboring measurements of one altitude overlap at their tangent point altitude. This overlap of the IRLS lines of sight allows for the application of tomographic methods <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx33" id="paren.47"><named-content content-type="pre">e.g.,</named-content></xref> and even requires them to utilize the instrument to its full capacity.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e1146">The measurement grid of a MIPAS-like instrument <bold>(a)</bold> and the        IRLS <bold>(b)</bold>. The blue lines indicate the lines of sight of single limb scans. The orange dots indicate the tangent points of multiple adjacent profiles 2100 km along track.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f01.png"/>

        </fig>

      <p id="d1e1161">The first proposed spatial detection method is a two-dimensional evolution of
the CI method, described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3.SSS1"/>. The cloud detection
is improved by taking into account not only the tangent point of a measurement
but instead the full extent of and overlap within the tangent point layer. This
extension already allows for the exploitation of the increased sampling density
of IRLS-like instruments.</p>
      <p id="d1e1167">In addition, a much more computationally involved method is proposed in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS3.SSS2"/>. This  method deduces the atmospheric
extinction values of clouds in a tomographic nonlinear inversion that has so
far been mostly used to derive temperature and trace gas concentrations.</p>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>2-D convex hull CI</title>
      <p id="d1e1179">If the cloud index of a measurement is below the threshold, a cloud has been
detected along the line of sight of the measurement. But it is not clear where
along the measurement the cloud is located. It could be, in theory, in low Earth
orbit, right in front of the satellite, close to the tangent point, or at any
point in between or beyond. As such, the cloud index is better suited for
selecting cloud-free measurements for trace gas retrievals than locating clouds. Due to the curvature of the Earth, the line of sight of a measurement stays
longer in the atmospheric layer surrounding the tangent point than the layers above. This makes it more sensitive to clouds in this layer than the layers above; but the signal of a “thicker” cloud at a higher layer is still indistinguishable from a signal of a “thinner” cloud in the tangent layer.</p>
      <p id="d1e1182">This section introduces a method that exploits the existing overlap
of measurements of limb sounder instruments to address this problem and
improve upon the positioning of detected clouds, i.e., to properly compute the convex hull of clouds determined
by the CI of individual spectra. The convex hull of a set of points is the
smallest convex shape that fully encloses the points.
As the CI is computed from integrated
microwindows over a rather large spectral range, there is no meaningful effect
on the results by the spectral resolutions of IRLS measurements. Therefore, this
aspect of the different instruments is neglected. (Further, the increased spectral
resolution typically comes at the cost of a reduced horizontal sampling, which
counteracts the purpose of exploring the spatial detection capabilities.)</p>
      <p id="d1e1185">A common approximation of the spatial origin of a radiance measurement is
assigning it to its tangent point, which is the location along its line of sight
that is closest to the surface. This is the location where the air is densest
and thus from where most radiation is emitted in optically thin conditions.
Obviously, this assumption breaks down in the presence of clouds. This poses the
largest problem in determining the position of clouds from the CI and the
tangent point location alone.
Figure <xref ref-type="fig" rid="Ch1.F2"/> shows an extinction
cross section and associated CI values. Comparing the location of small clouds
(extinctions <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) in the upper panels to the
corresponding structures in CI in the lower panels, one can easily see how the
assumption of emission stemming from the tangent point breaks down for an
optically thick (i.e., nontransparent) medium. The curved structures peak at the
location of the cloud and then extend downwards to both sides for measurements that either “hit” the cloud before or after the tangent point. The resulting structure is still useful as it is a strict overestimate of the dimensions of the clouds (above the detection limit). Also the cloud top altitude of the true cloud can be properly determined to high accuracy compared to, e.g., nadir sounders.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e1223">CALIOP extinction <bold>(a)</bold> and CALIOP extinction reduced by a factor of 10 <bold>(d)</bold> (measured on 1 December 2009 from 03:37:36 UTC onward) as well as the associated CI derived from simulated MIPAS measurements in <bold>(b, e)</bold>. The CI
derived from simulated IRLS measurements is given in <bold>(c, f)</bold>, respectively. The contour line for an extinction value of <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is shown as a light blue line in all panels.  The satellite looks northwards in these simulations.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f02.png"/>

          </fig>

      <p id="d1e1273">Knowing that measurements indicated as cloud-free according to the CI
typically have no cloud within the tangent point layer, where the lines of sight are nearly horizontal, we can improve the method. Especially optically thin ice clouds are often rather thin vertically, which means that the radiances measured by lines of sights passing through the thin cloud at steeper angles may not be
strongly affected and thus not detect its presence. Therefore, one may not
easily extend the cloud-free assumption to the layers that the line of sight
passes through at altitudes significantly above the tangent altitude.</p>
      <p id="d1e1276">The proposed first new detection method works as follows:
<list list-type="custom"><list-item><label>1.</label>
      <p id="d1e1281">Build a regular grid covering the cross section. Here, a grid with a vertical spacing of 500 m was chosen to be a bit finer than the          measurement grid of the IRLS to be robust against slight variations of          tangent point altitude due to temperature and pressure variations.          The horizontal location of the profiles was taken to coincide with the lowermost tangent points (this causes a slight shift between grid and tangent point location for higher altitudes). Each grid box is assigned a value of 0 (i.e., it is assumed to be cloudy; final values of zero can also<?pagebreak page7030?> be used, however, to determine grid boxes without measurement information).</p></list-item><list-item><label>2.</label>
      <p id="d1e1285">The line of sight for each spectrum is computed for a distance of <inline-formula><mml:math id="M62" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> km before and behind its tangent point. Here, a very conservative (small) value of 100 km was chosen for <inline-formula><mml:math id="M63" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> to reduce the number of false negatives (i.e., to decrease the number of undetected clouds).</p></list-item><list-item><label>3.</label>
      <p id="d1e1303">Successively for each line of sight, each grid box that it passes through is assigned the maximum between its current value and the CI of the spectrum.</p></list-item><list-item><label>4.</label>
      <p id="d1e1307">Lastly, the CI of each grid box is compared to the CI threshold   associated with its altitude and latitude band <xref ref-type="bibr" rid="bib1.bibx46" id="paren.48"/> to   determine whether or not a cloud is present.</p></list-item></list></p>
      <p id="d1e1313">This algorithm gives a cloud/no-cloud decision for the 2-D cross section
measured by the limb sounder that is more precise than the CI method alone. For one cross section of a half-orbit as shown below
(e.g., Fig. <xref ref-type="fig" rid="Ch1.F4"/>), the method uses less than 1 min of computation time on one core of an AMD EPYC 7351P 16 Core
Processor operating at 2.9 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">GHz</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>Tomographic extinction retrieval</title>
      <p id="d1e1334">The second method briefly investigates the capabilities of employing a
full-blown nonlinear retrieval for the determination of cloud positions. This
is a computationally more demanding task compared to the color-ratio-based
schemes and as such may be less suited for a quick identification scheme for
filtering affected spectra. However, computational capacity steadily increases,
and the current scheme is well suited for real-time usage.</p>
      <p id="d1e1337">The method is comparable to the one employed by <xref ref-type="bibr" rid="bib1.bibx4" id="text.49"/> but
is simplified due to the neglect of scattering. The intent is to show the
capabilities of this approach in combination with an increased
measurement density. The retrieval employed the same JURASSIC2 forward model and
setup that was used for generating the synthetic measurements. While the
simulated measurements were generated using the original, fine grid on which the
CALIOP L2 data are supplied, the retrieval grid was reduced to 500 <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
vertically in the relevant altitude range and <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>
horizontally. This corresponds to roughly 1000 profiles for the half-orbit in
the CALIOP-based simulations. We use the same spectral setup as used for the
generation of synthetic radiances; i.e., only two averaged radiances were
simulated, centered at 792.00 and 833.00 <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The same trace gases and volume mixing ratios were used in the retrieval as in the forward simulation. Perfect knowledge was assumed for all trace gases, which is obviously a strong simplification. But due to the strong radiative effect even of thin ice clouds in the limb, this is likely justified, but its examination is beyond the scope of this study. Temperature and extinctions were assumed unknown, and climatological values and a zero profile were used as a priori information and initial guess for temperature and extinction, respectively. Also, the scattering
effect<?pagebreak page7031?> of clouds was neglected here, as we are only interested in the detection, not in a quantitative analysis of the retrieved extinction.</p>
      <p id="d1e1383">Computing the spatially located extinction from the radiances poses an inverse problem. The solution to this problem is identified by iteratively modifying an atmospheric state <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mi>i</mml:mi><mml:mo>∈</mml:mo><mml:msub><mml:mi mathvariant="double-struck">N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, such that the simulated measurements <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:mi>F</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> progressively agree better with the actual (in this case also
partially simulated) measurements <inline-formula><mml:math id="M72" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula> within expectation of the noise
equivalent spectral radiances (NESRs) of the measurements, under the
side condition of being close to a “plausible” atmospheric state <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>:
              <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M74" display="block"><mml:mtable class="split" rowspacing="0.2ex" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mi mathvariant="bold">F</mml:mi><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>⋅</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="bold-italic">F</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d1e1639">The matrix <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> is defined as a Tikhonov–Phillips-type regularization matrix, imposing smoothness conditions in horizontal and vertical direction on the solution <xref ref-type="bibr" rid="bib1.bibx54" id="paren.50"/>. The parameter <inline-formula><mml:math id="M76" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is a dampening parameter of the Levenberg–Marquardt algorithm and typically converges to zero as <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> converges on the solution <xref ref-type="bibr" rid="bib1.bibx32" id="paren.51"/>. <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> denotes the Jacobian matrix of <inline-formula><mml:math id="M79" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> evaluated at <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Typically, one uses <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> as a value for <inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. The matrix <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="italic">ϵ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is set up assuming a 0.1 % error in radiance, which has been chosen to allow for differences caused by the
use of different grids for generating the synthetic measurements and the
retrieval itself.</p>
      <p id="d1e1756">For temperature, only the second derivatives are constrained with correlation lengths of 1 km vertically and 200 km horizontally. Restraining the second derivative enforces a smooth lapse rate for temperature <xref ref-type="bibr" rid="bib1.bibx57" id="paren.52"/>, which is
useful for further analysis of the dynamical structure around the thermal
tropopause. For extinction, the first derivatives in both spatial directions
are constrained using the same correlation lengths in addition to imposing a weak constraint of the
absolute extinction values towards the zero profile. These values are selected to be
similar to those practically used in tomographic studies for the GLORIA
instrument. The qualitative result does not depend largely on the type of
regularization as long as it is neither too strong to smooth the solution nor
too weak to allow for oscillations, as the aim is so far not to perfectly
reproduce the original extinction values but to arrive at a simple
cloud/no-cloud product. The retrieval employs the numerical techniques developed
for the GLORIA limb sounder tomography to quickly derive a solution
<xref ref-type="bibr" rid="bib1.bibx55 bib1.bibx56" id="paren.53"/>. As only two spectrally averaged samples
are simulated from each spectrum, the computation time and memory consumption
are manageable. The retrieval for a half-orbit consumes about 200 MB, mostly for storing Jacobian matrices, and requires about 25 min on eight cores (same machine as above) to converge to a satisfactory state, which can be readily accomplished in real time. A full day of measurements (for an exemplary 14.5 orbits) would thus consume <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> h.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Study on synthetic data</title>
      <p id="d1e1785">In this section we use synthetic spectra generated by JURASSIC2 based on CALIOP extinctions to evaluate the algorithms. To focus on the relative capabilities of the algorithms, we added Gaussian noise to simulated MIPAS or IRLS measurements with a standard deviation of 0.8 <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nW</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">sr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>2-D convex hull CI</title>
      <p id="d1e1824">In a first step, we compare the cloud indices as gained from MIPAS-like and
IRLS spectra. Figure <xref ref-type="fig" rid="Ch1.F2"/>b shows the CI for the simulated spectra based on an exemplary CALIOP cross section and the MIPAS measurement grid and spectral resolution. The simulated radiances were generated using the grid defined by the CALIOP L2 data shown in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>a. The “pixels” corresponding to MIPAS measurements in Fig. <xref ref-type="fig" rid="Ch1.F2"/>b are very coarse compared to the fine structure of the clouds contained in the CALIOP data due to the much sparser horizontal sampling density of the MIPAS instrument. Figure <xref ref-type="fig" rid="Ch1.F2"/>c shows the IRLS
simulations. The increased spatial sampling density results in a much finer
sampling of the clouds, but the bow-like artifacts due to the optically thick
atmospheric conditions become apparent. These are also given in the synthetic
MIPAS data but are barely discernible due to the coarse measurement grid.
Figures <xref ref-type="fig" rid="Ch1.F2"/>d–f show the same
situation but with CALIOP extinction reduced by a factor of 10. These
numerical experiments shift the focus to very thin clouds that may not be
present in the original data set.</p>
      <p id="d1e1837">The results of the convex hull CI algorithm are exemplarily depicted in
Figs. <xref ref-type="fig" rid="Ch1.F3"/>
and <xref ref-type="fig" rid="Ch1.F4"/>.
Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the results for the
MIPAS instrument, while Fig. <xref ref-type="fig" rid="Ch1.F4"/> shows the result for the IRLS instrument. For MIPAS, no obvious differences between CI and the convex hull CI are apparent. The minor visible discrepancies can be attributed to the difference between the tangent point grid of the CI and the rectilinear grid on which the convex hull CI algorithm operates. In contrast, a noticeable improvement can be seen for the IRLS measurements. The convex hull CI algorithm reduces the bow-like structures around thin clouds. Especially the comparatively small structures at 38<inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N have a much reduced size, more aligned with the true structure as shown by the extinction contour. But a deficit is also apparent. Below thick clouds, no actual measurement information is present, and the CI is (wrongly) attributed to the tangent point location. This will still cause an overestimation of cloud presence.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e1859">Result of the convex hull CI algorithm for MIPAS simulations based on CALIOP extinctions reduced by a factor of 10. Panel <bold>(a)</bold> shows the CI at the location of tangent points.
Panel <bold>(b)</bold> shows the location of clouds according to the altitude
dependent CI threshold. Panel <bold>(c)</bold> shows the CI determined with
the convex hull CI algorithm. Panel <bold>(d)</bold> shows the location of
clouds according to the altitude-dependent CI threshold. The cloud
position from <bold>(b)</bold> is shown as a red contour line for reference. The contour line for a “true” extinction value of
<inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is shown as a light blue line in all panels.
The satellite looks northwards in these simulations.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f03.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e1915">Result of the convex hull CI algorithm for IRLS simulations based on
CALIOP extinctions reduced by a factor of 10. Panel <bold>(a)</bold> shows the CI at the location of the tangent points. Panel <bold>(b)</bold> shows the location of clouds according to the altitude-dependent CI threshold. Panel <bold>(c)</bold> shows the CI determined with the convex hull CI
algorithm. Panel <bold>(d)</bold> shows the location of clouds according to the altitude-dependent CI threshold. The cloud position from <bold>(b)</bold> is shown as a red contour line for reference. The contour line for a
“true” extinction value of <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is shown as a
light blue line in all panels. The satellite looks northwards in these simulations.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>2-D tomographic extinction retrieval</title>
      <p id="d1e1976">This section presents some results of the extinction retrieval. Figure <xref ref-type="fig" rid="Ch1.F5"/> shows the
extinction retrieved for the same extinction distribution derived from CALIOP
data for MIPAS and<?pagebreak page7032?> IRLS data for one of the 440 processed cross
sections. Both retrievals were set up identically with the
difference that Fig. <xref ref-type="fig" rid="Ch1.F5"/>b used
simulated MIPAS measurements and a coarser horizontal retrieval grid
(<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">160</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>) and
Fig. <xref ref-type="fig" rid="Ch1.F5"/>c used simulated IRLS
measurements. The MIPAS-based retrieval is both horizontally and vertically
coarser in comparison to the IRLS retrieval as required by the different
measurement grid. The results are generally more accurate than the picture
provided by the CI in Fig. <xref ref-type="fig" rid="Ch1.F3"/> as even
for the coarse MIPAS measurement grid, the overlap of measurements at higher
altitudes can be used to constrain the location of thin clouds better. The
retrieval using the IRLS measurement specification in
Fig. <xref ref-type="fig" rid="Ch1.F5"/>c offers a much better
resolved result. The finer spatial sampling and the reduced field of view allow us to see below clouds with clear-sky conditions, as with the equatorial high cirrus cloud. We also encountered similar conditions with our airborne instruments GLORIA (see below) and CRISTA-NF <xref ref-type="bibr" rid="bib1.bibx49" id="paren.54"/>.
The location of clouds, expressed in increased values of
extinction, is more precise and much closer to the actual extinction
distribution compared to the CI-based methods. Some artifacts remain below thick clouds, where, due to their opacity, no or nearly no measurement information is present. As such, the values below 9 km at 20<inline-formula><mml:math id="M93" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S are not reliable. On the other hand, the weak structures at and above 15 km are well reproduced. Obviously, the retrieval works better for optically thin conditions.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e2022">Retrieval of extinction from simulated measurements using CALIOP
extinctions reduced by a factor of 10. Panel <bold>(a)</bold> shows the
true extinction while Panel <bold>(b)</bold> shows the retrieved values for
a MIPAS-like instrument. Panel <bold>(c)</bold> gives the results for an
instrument with higher measurement density such as the IRLS. The contour
line for a “true” extinction value of <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is
shown as a light blue line in all panels. The satellite looks northwards in these simulations.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>Comparison of 2-D cloud top detection accuracy</title>
      <p id="d1e2076">This section aims to quantify the performance of the 2-D convex hull CI and the
2-D tomographic extinction retrieval algorithms with respect to cloud top
height estimation. We focus here on the capabilities of the IRLS instrument.
Figure <xref ref-type="fig" rid="Ch1.F6"/> shows an exemplary CALIOP orbit with
detected cloud extent according to the CALIOP extinctions (extinction larger
than <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), cloud index (CI), convex hull cloud index
(convex hull CI), and tomographic extinction retrieval (extinction larger than
<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). A slightly larger threshold is employed
here, as the smoothing by the regularization extends the rather large
extinctions vertically, and a smaller threshold would thus lead to a
systematic overestimation of cloud extent. One can immediately see that all methods
typically agree within about 1 km, with larger errors occurring at the border
of extended cloud regions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e2143">Comparison of cloud top detection capability for the various discussed methods and the IRLS instrument. Panel <bold>(a)</bold> shows the cloud extent contained in the CALIOP data. Panel <bold>(b)</bold> shows the cloud extent according to the CI. Panel <bold>(c)</bold> shows the cloud extent according to the convex hull CI algorithm. Panel <bold>(d)</bold> shows the cloud extent according to the tomographic extinction retrieval. In all panels, the orange line shows the true cloud top altitude, where clouds are present above
7 <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> with a lower limit of 7 <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. The red line shows
the cloud top altitude according to the depicted algorithm.
The satellite looks northwards in these simulations.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f06.png"/>

        </fig>

      <p id="d1e2181">Table <xref ref-type="table" rid="Ch1.T1"/> shows the numerical results for the
cloud top height derived by the three algorithms for 440 semi-randomly
selected CALIOP orbits (we arbitrarily picked 1 month of data).
Using unmodified CALIOP extinctions, the CI shows a
positive bias of 1.08 km with a standard deviation of 2.29 km. There are two
major sources for a high bias.<?pagebreak page7033?> First, the field of view of the instrument
causes an overestimation of cloud top altitude, especially for thicker clouds
<xref ref-type="bibr" rid="bib1.bibx16" id="paren.55"><named-content content-type="pre">e.g.,</named-content></xref>. Second, and more importantly, the cloud is
horizontally extended, causing cloud detection events beside the actual cloud, where no cloud is in the original data <xref ref-type="bibr" rid="bib1.bibx25" id="paren.56"><named-content content-type="pre">e.g.,</named-content></xref>. The second effect mainly causes the large variance in the results. As expected, the convex hull CI algorithm significantly reduces this bias, whereby the tomographic extinction retrieval even seems to be superior. Both are
capable of reducing the impact of “horizontal cloud lengthening”. For thinner clouds, the situation improves all around. Using clouds that are an order of magnitude thinner, here, the CI shows a bias of only 0.66 km. For optically thinner clouds the general cloud top height overestimation is reduced or even turns into an underestimation <xref ref-type="bibr" rid="bib1.bibx16" id="paren.57"/>, and the horizontal cloud lengthening is also reduced (Fig. <xref ref-type="fig" rid="Ch1.F5"/>). The bias of the convex hull CI algorithm and the tomographic extinction retrieval are both on the order of 160 m, whereby the extinction retrieval has a reduced standard deviation compared to the convex hull algorithm.</p>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e2205">This table aggregates the difference between true cloud top altitude and determined cloud top altitude for 440 CALIOP orbits acquired in December 2012 for simulated IRLS measurements.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col2">Cloud top altitude comparison </oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Test case</oasis:entry>
         <oasis:entry colname="col2">CI error</oasis:entry>
         <oasis:entry colname="col3">Convex hull CI error</oasis:entry>
         <oasis:entry colname="col4">Ext. ret. error</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CALIOP extinctions</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.08</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2.29</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.71</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2.03</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.47</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.50</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> CALIOP extinctions</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.66</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">2.14</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.16</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.96</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.16</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.32</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2362">As the overestimation of the horizontal extent of clouds strongly affects the
cloud top altitude comparison, we examined more closely how well the shape of the cloud top is reproduced. In a first step the true cloud top is determined
from CALIOP extinctions. Using the tomographic extinction retrieval grid, all
cloud top grid boxes plus all boxes within two squares' distance (Manhattan norm, <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> km vertically, <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> km horizontally) are selected for
comparison. The results are collected in Table <xref ref-type="table" rid="Ch1.T2"/>. The table shows an increase for
correctly identified cloudy pixels for the three methods, with the conventional CI being worst and the tomographic extinction retrieval being best. False positives decrease accordingly. However, there is a slight increase for false negatives, which is caused by horizontally small clouds that are filtered away by the convex hull CI as the CI is pushed below the threshold and for which the tomographic extinction retrieval determines an extinction below the threshold (potentially due to slightly smearing out the cloud). This is confirmed by the numbers for the scaled extinction test cases, for which the number of false negatives increases across the board.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e2390">This table aggregates the difference between the true cloud top shape and determined cloud top shape for 440 CALIOP orbits acquired in December 2012 for simulated IRLS measurements. All values are in percent.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="10">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:colspec colnum="6" colname="col6" align="center"/>
     <oasis:colspec colnum="7" colname="col7" align="center"/>
     <oasis:colspec colnum="8" colname="col8" align="center"/>
     <oasis:colspec colnum="9" colname="col9" align="center"/>
     <oasis:colspec colnum="10" colname="col10" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry namest="col1" nameend="col5">Cloud top shape comparison </oasis:entry>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
         <oasis:entry colname="col8"/>
         <oasis:entry colname="col9"/>
         <oasis:entry colname="col10"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry namest="col2" nameend="col4" colsep="1">CI </oasis:entry>
         <oasis:entry namest="col5" nameend="col7" colsep="1">Convex hull CI </oasis:entry>
         <oasis:entry namest="col8" nameend="col10">Ext. ret. </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Test case</oasis:entry>
         <oasis:entry colname="col2">ok</oasis:entry>
         <oasis:entry colname="col3">fn</oasis:entry>
         <oasis:entry colname="col4">fp</oasis:entry>
         <oasis:entry colname="col5">ok</oasis:entry>
         <oasis:entry colname="col6">fn</oasis:entry>
         <oasis:entry colname="col7">fp</oasis:entry>
         <oasis:entry colname="col8">ok</oasis:entry>
         <oasis:entry colname="col9">fn</oasis:entry>
         <oasis:entry colname="col10">fp</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CALIOP extinctions</oasis:entry>
         <oasis:entry colname="col2">74</oasis:entry>
         <oasis:entry colname="col3">1</oasis:entry>
         <oasis:entry colname="col4">24</oasis:entry>
         <oasis:entry colname="col5">80</oasis:entry>
         <oasis:entry colname="col6">4</oasis:entry>
         <oasis:entry colname="col7">16</oasis:entry>
         <oasis:entry colname="col8">89</oasis:entry>
         <oasis:entry colname="col9">4</oasis:entry>
         <oasis:entry colname="col10">7</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> CALIOP ext.</oasis:entry>
         <oasis:entry colname="col2">78</oasis:entry>
         <oasis:entry colname="col3">4</oasis:entry>
         <oasis:entry colname="col4">18</oasis:entry>
         <oasis:entry colname="col5">81</oasis:entry>
         <oasis:entry colname="col6">8</oasis:entry>
         <oasis:entry colname="col7">12</oasis:entry>
         <oasis:entry colname="col8">89</oasis:entry>
         <oasis:entry colname="col9">6</oasis:entry>
         <oasis:entry colname="col10">5</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d1e2393">The label “ok” means
correctly detected, “fn” false negative, and “fp” false positive.</p></table-wrap-foot></table-wrap>

</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>3-D IRLS scenario – spatial detection capabilities</title>
      <p id="d1e2584">This section describes the result for the convex hull algorithm CI for the CLaMS-ICE-model-based simulations that allow for the simulation of the across-track coverage
of the IRLS instrument in contrast to the CALIOP-based simulations that allow
for only a simulation of the center track.</p>
      <?pagebreak page7035?><p id="d1e2587"><?xmltex \hack{\newpage}?>Figure <xref ref-type="fig" rid="Ch1.F7"/> shows horizontal cross sections at several
pressure levels through the extinctions derived from the 3-D CLaMS-ICE ice water
content simulation. The center of the simulated IRLS measurements follows the
19<inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W meridian. Actual satellite measurements of the instrument will not follow a perfect polar orbit, but for the simulations, the difference is
negligible and simplifies the simulation setup. One can see a cloud field on the
left-hand side on lower altitudes and a second cloud field on the
right-hand side at different altitudes. At higher latitudes, the two cloud
fields merge. This situation gives a nice across-track variation over the images of the IRLS that can be examined in the following.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e2604">Extinction of a cirrus cloud simulated by CLaMS-ICE and computed from ice water content and particle radii.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f07.png"/>

        </fig>

      <p id="d1e2614">This variation can be seen better in Fig. <xref ref-type="fig" rid="Ch1.F8"/> that
shows the CLaMS-ICE extinction as “images” as the IRLS would see them. Each “pixel” of the picture corresponds to one pixel of the IRLS, but the horizontal coverage is slightly larger by 2 pixels. The IRLS would take roughly twice as many images of the situation than depicted here. The depicted images cover the latitudes from
39.1 to 64.6<inline-formula><mml:math id="M113" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N. The simulation ends shortly beyond these
latitudes. The images show a two-layered structure on the left-hand side between 42.7 and 51.9<inline-formula><mml:math id="M114" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N. Northward of 46.4<inline-formula><mml:math id="M115" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, one can see the second cloud structure to the right, first with rather faint extinctions and then higher ones until the two structures join around 61<inline-formula><mml:math id="M116" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e2657">Cross section through CLaMS-ICE extinction data corresponding roughly to the field of view of the IRLS. Only every second image of the IRLS is depicted.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f08.png"/>

        </fig>

      <?pagebreak page7036?><p id="d1e2666">The measurements of the individual tracks can be treated individually as
singular cross sections and may be assembled in a second step. As MIPAS only
measured a single track, no MIPAS simulations are shown here for comparison as the results will not be different from those of
Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/>.</p>
      <p id="d1e2671">The computation of the conventional CI and the application of the cloud index
threshold are depicted in Fig. <xref ref-type="fig" rid="Ch1.F9"/>a and b. Similar to the
simulations of Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/>, the cloud extent is
overestimated to the sides of the clouds and below. The result of the convex
hull CI algorithm is shown in Fig. <xref ref-type="fig" rid="Ch1.F9"/>c<?pagebreak page7037?> and d. One can see
again that the new algorithm follows the true extinction more closely. In the case of
the central track (Fig. <xref ref-type="fig" rid="Ch1.F9"/>e), it becomes apparent that the
chosen value for extinction of <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is not the true
detection limit as the faint cloud structure in the center track below that
limit is also detected by the CI.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e2713">Cloud index and convex hull CI for three measurement tracks of a simulated IRLS instrument (left, center, and right).
Panel <bold>(a)</bold> shows the extinction values used for generating the simulated measurements. Panel <bold>(b)</bold> shows the cloud index,
and <bold>(c)</bold> shows the corresponding cloud detection. Panel <bold>(d)</bold> shows the CI as derived from the convex hull CI
algorithm, whereas <bold>(e)</bold> shows the cloud detection for the
convex hull CI. The contour line for a “true” extinction value of <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is shown as a light blue line in all panels.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f09.png"/>

        </fig>

      <p id="d1e2767">The individual tracks can then be assembled into a three-dimensional view on the
cloud structure. Figure <xref ref-type="fig" rid="Ch1.F10"/>a shows a three-dimensional
representation of the true extinction distribution. The zonal extent is limited
by the measurement coverage of the IRLS. One can see the across-track and
along-track variation as well as the vertical structure. The result of the
convex hull CI algorithm is presented in Fig. <xref ref-type="fig" rid="Ch1.F10"/>b. The
three-dimensional results agree similarly to the cross sections discussed
before. The cloud extent is slightly overestimated horizontally, and the vertical
structure of the cloud is lost; the bottom of the cloud is often
located lower than in the actual extinction structure. Also, the very small spot
of a cloud to the south was not detected.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e2776">The true <bold>(a)</bold> and derived <bold>(b)</bold> cloud structure using the convex hull CI algorithm. A white contour surface is shown for <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in the measurement track of the IRLS. The vertical dimension is stretched by a factor of roughly 100. Due to the employed cylindrical projection, the measurements expand towards the back.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f10.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S5">
  <label>5</label><title>3-D retrievals using GLORIA measurements</title>
      <p id="d1e2829">The final section applies the extinction retrieval approach to real
measurements. While currently no limb sounding satellite instrument with a
sufficient measurement density in the UTLS exists, the airborne GLORIA
instrument can serve well for a feasibility study, even though the 3-D retrieval of GLORIA is more complicated than the one needed for satellite-borne instruments. In fact, it resembles techniques to reconstruct 3-D cloud structures from ground-based cloud imagers more closely <xref ref-type="bibr" rid="bib1.bibx37" id="paren.58"/> but with a horizontal viewing geometry and a moving single instrument instead of multiple stationary ones. We determine a spatially resolved extinction value that does not allow us to distinguish between trace gas, ice cloud, and aerosol emission. In the given spectral range, emission from trace gases is negligible compared to
that of ice clouds, and we know from closer inspection of spectra and other sources of information that there was no strong aerosol load such as
that generated by a volcanic eruption or biomass burning.</p>
      <p id="d1e2835">This numerical experiment uses measurements acquired on 18 September 2017
during the WISE campaign. Here, the GLORIA instrument operated with a spectral sampling of 0.2 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and panning from 45 to 132<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in 6<inline-formula><mml:math id="M125" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> steps while following a straight flight path.</p>
      <p id="d1e2870">We used all images taken between 11:10 UTC and 12:35 UTC in the reconstruction.
The 3-D retrieval is computationally significantly more expensive compared to
the 2-D retrievals as the number of unknowns is much higher, and the
algorithms involved scale with a power of given unknowns. The atmospheric volume is
also much less constrained by the measurements as the number of unknowns vastly
outnumbers the measurements, and the distribution of information is far from
homogeneous. We found that deriving temperature and extinction similar to the
2-D setup works well within the volume covered by tangent points but quickly
deteriorates outside. Thus, we neglect the temperature retrieval here, as
this improved the retrieval on three fronts. First, this allows
the 792 <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> window to be discarded and any trace gas emissions to not be taken into
account in the forward modeling, drastically improving the forward model speed
by orders of magnitude. Second, it halved the number of unknowns, thereby
increasing convergence speed of iterative solvers by a factor of roughly 4
and decreasing memory consumption by half. Third, this also stabilized the
extinction retrieval such that the extinction values outside the core volume
are less affected by retrieval artifacts. The single microwindow employed
averaged all spectral samples between 831.2 and
835.0 <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (GLORIA operated in a mode that allows for a spectral
sampling of 0.2 <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> during this portion of the flight).
Measurements with tangent points below <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>
altitude were discarded as they do not contribute to the reconstruction of the
cirrus clouds at higher altitudes. Thus, 629 separate images with
61 611 radiance values in total were employed in the retrieval.
Figure <xref ref-type="fig" rid="Ch1.F11"/> shows one exemplary cloud scene. While the
camera in the visible samples a viewing angle of about 11<inline-formula><mml:math id="M131" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and
shows an extended cirrus cloud at <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">10.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, the infrared
camera only samples a section of about 1.5<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Here, the
employed horizontal averaging over the IR pixels is useful, but other
imaged clouds exhibit finer structures within an image, similar to the
filament at 319.3<inline-formula><mml:math id="M135" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
azimuth. But, even with the fine retrieval grid described below, they would
remain inaccessible. Future work will encompass a measurement scheme that
reduces the horizontal gaps between images and exploits the full
resolution capabilities of the detector.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e2984">A superposition of a visible and infrared image taken at
11:50:31 UTC, showing a cirrus cloud located at 10.5 <inline-formula><mml:math id="M136" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. The
visible image has a much wider field of view than the infrared one.
The infrared image has been extracted from the spectrally resolved
GLORIA measurements and shows the averaged radiance over the spectral
range from 831.2 to 835.0 <inline-formula><mml:math id="M137" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>; it has also been shifted
to the right for better comparability, and the radiance is depicted on a
logarithmic scale with arbitrary units. The black frame marks the
original position. The altitude axis on the right gives an approximate
tangent point altitude.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f11.png"/>

      </fig>

      <p id="d1e3015">The retrieval grid used a vertical sampling of 125 <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and a horizontal
sampling of 10 <inline-formula><mml:math id="M139" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> in both horizontal directions. The grid is rectilinear in a
stereographic projection centered around the center point of the volume rotated
in such a fashion that one axis of the grid is parallel to the flight path. The grid covered the volume of <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M141" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> in the horizontal direction and between 8 and 16 <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> altitude in the vertical direction.
The grid was extended further to encompass the whole measured volume up to
64 <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> altitude at a reduced sampling<fn id="Ch1.Footn1"><p id="d1e3069">This included the following: vertically, 2 km steps up to 24 <inline-formula><mml:math id="M144" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> and 8 km steps up to 64 <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, and horizontally, 1000 km steps up to 3000 km distance from the center.</p></fn>. Altogether, this resulted in 3 235 925 extinction values to be reconstructed. This number is significantly larger than the number of measurements, making this
a drastically underdetermined problem.</p>
      <?pagebreak page7038?><p id="d1e3089">The inverse problem, i.e., identifying an atmospheric state fitting to the
measurements, is an ill-posed problem. To solve it, we approximate it by a
well-posed, regularized formulation. To regularize the problem, we employ
constraints of zeroth and
first order. We used a standard deviation for extinction of
<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for atmospheric samples with an ECMWF potential
vorticity (PV) below 3 PVU and <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for
atmospheric samples with an ECMWF potential vorticity above 5 <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">PVU</mml:mi></mml:mrow></mml:math></inline-formula>. In
between, a linearly interpolated value was used. This setup avoids strong cloud
signals in the stratosphere, which might otherwise appear as artifacts outside the well-measured volume and it does not affect the reconstructed extinctions in the well-resolved region. We assumed extinction structures to be typically <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula> times longer horizontally than vertically and scaled the first derivative accordingly. The well-resolved volume surrounds the locations of the tangent points and is highlighted in the retrieval results. See <xref ref-type="bibr" rid="bib1.bibx31" id="text.59"/> for a more involved discussion on this kind of linear-flight tomography and its capabilities.</p>
      <p id="d1e3174">Figure <xref ref-type="fig" rid="Ch1.F12"/> shows the measured brightness temperatures of the averaged microwindow used in the retrieval taken at different
azimuth angles. Just these three given angles already give some insight into the real
cloud structure (while the retrieval also has access to the full set of angles).
The thin structure at 10.5 <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> at 11:45 UTC in
Fig. <xref ref-type="fig" rid="Ch1.F12"/>a is the increased radiance emitted by a cirrus
cloud. From this figure alone, it is not<?pagebreak page7039?> determined if the cloud extends
vertically over several kilometers or moves away from the aircraft at
earlier measurements. The images taken at different azimuth angles deliver the
missing information. The image taken at 126<inline-formula><mml:math id="M153" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> shows the cloud shrunk to nearly a single blob. This tells us the angle of the elongated cirrus cloud with respect to the flight path. Taken together, we can compute that this cloud nearly runs in a perfect north–south direction. In combination with the slanted structure of the cloud at other angles, the horizontal extent orthogonal to the flight path can be computed. Further information could be discerned from the vertical structure at 11:45 UTC in Fig. <xref ref-type="fig" rid="Ch1.F12"/>b. A similar
structure is given in all measurements taken at this time. This is caused by a
cloud very close to the aircraft as it is seen at all azimuth angles around this
same time but not present at times more than a couple of minutes before and
after. The retrieval is a mathematical method to extract this and more information
from the measurements in an optimal fashion.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><label>Figure 12</label><caption><p id="d1e3202">Brightness temperature of GLORIA measurements averaged over the wavenumber range from 831.2 to 835 <inline-formula><mml:math id="M154" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (the same that is used as
in the tomographic retrieval) over time, sorted according to azimuth
angle in relation to aircraft heading.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f12.png"/>

      </fig>

      <p id="d1e3226">The volume can best be reconstructed close to the tangent points of the radiance
measurements <xref ref-type="bibr" rid="bib1.bibx31" id="paren.60"><named-content content-type="pre">e.g.,</named-content></xref>. Atmospheric samples much closer to the
flight path were not measured at all. Atmospheric samples beyond the volume
covered by tangent points could also be reconstructed but with quickly
deteriorating quality. As in all tomographic reconstructions, measured
structures are smeared along the lines of sight of the measurements if not
constrained by measurements taken at different angles. Due to the curvature of the
Earth, thick clouds measured at low altitudes are smeared along the
line of sight, which curves upwards from the tangent points and causes high
extinction values at implausible altitudes — which is one of the reasons we
employed the PV-dependent regularization scheme. Please note that due to the
geometry of satellite measurements, the overlap of the lines of sight is much
better, which prevents such artifacts. The results of the
reconstruction are depicted in Fig. <xref ref-type="fig" rid="Ch1.F13"/>. The two
horizontal cross sections show retrieved extinction values at two altitudes. At 10.5 <inline-formula><mml:math id="M155" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, one can see two cloud structures close to Iceland, a vertically thick and horizontally extended cloud at 20<inline-formula><mml:math id="M156" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W and the thin cirrus cloud previously discussed at 16<inline-formula><mml:math id="M157" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W. The north–south extension already visible from Fig. <xref ref-type="fig" rid="Ch1.F12"/> is
also present here. Neither of the clouds visible at 10.5 <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> extends up to 12.5 <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, where several small clouds close to the flight path are reproduced by the retrieval, which are associated with the vertically elongated areas of increased radiance in Fig. <xref ref-type="fig" rid="Ch1.F12"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><?xmltex \currentcnt{13}?><label>Figure 13</label><caption><p id="d1e3285">Cross sections of extinction retrieved from GLORIA measurements.
Panel <bold>(a)</bold> shows a horizontal cross section at 10.5 <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>
and <bold>(b)</bold> one at 12.5 <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. The flight path is shown in
blue; the trust region with high confidence in retrieval results around the
tangent points of measurements is marked in orange. The three red ellipses mark areas of interest.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f13.png"/>

      </fig>

      <p id="d1e3316">A theoretical analysis of the achieved resolution gives similar results to our previous work on deriving temperature structures <xref ref-type="bibr" rid="bib1.bibx31" id="paren.61"/>. Within the well-resolved volume the analysis shows an information content of about 0.05; i.e., 20 samples share about 1 degree of freedom; outside it drops to an order of magnitude less, but numerical instabilities of the involved equation systems make this difficult to compute precisely. Some systematic uncertainty due to uncertainty in the line of sight might bias the cloud tops' estimate<fn id="Ch1.Footn2"><p id="d1e3322">Current estimates of our pointing accuracy are in the order of 0.05–0.1<inline-formula><mml:math id="M162" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, which translates to a bias of 50 <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> 5 <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> below the aircraft, getting progressively worse towards lower altitudes.</p></fn>. The
vertical resolution in the area of the cirrus clouds is in the order of
300 <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, decreasing to 400 <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> for lower levels. The horizontal
resolution is on the order of 30 <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> in the flight-track direction and
70 <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> orthogonal to that. Circular flight patterns, or, better, a
backwards-viewing limb satellite, could further improve the horizontal
resolution <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx30" id="paren.62"/>.</p>
      <?pagebreak page7040?><p id="d1e3387">While the vertical extent, especially the cloud top, can be deduced with very
high precision compared to nadir-viewing instruments, it is not obvious that the
horizontal extent was properly derived. For verification and comparison of the quality
of both, we used nadir-viewing images of the Spinning Enhanced Visible and
Infrared Imager (SEVIRI; <xref ref-type="bibr" rid="bib1.bibx45" id="altparen.63"/>) on the second-generation
operational weather satellite Meteosat (MSG) and the Moderate Resolution
Imaging Spectroradiometer (MODIS; <xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx41" id="altparen.64"/>) on the Terra satellite.
Due to its geostationary orbit, SEVIRI offers a good temporal coverage.
Two spectral channels are shown
in Fig. <xref ref-type="fig" rid="Ch1.F14"/>. The image from the visible spectrum at
0.8 <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> shows scattered light from clouds at all altitudes. The
second channel at 12.0 <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> shows the brightness temperature of
infrared light emitted by the ground and clouds. (While scattering also plays a role here, we believe its influence to be small enough such that we can neglect it for this qualitative discussion.) The 12 <inline-formula><mml:math id="M171" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> channel was selected as it uses the same
spectral region that is also used in the GLORIA extinction retrieval. Clouds at higher altitude have a smaller brightness temperature than clouds at lower
altitudes due to their lower temperature. Both images were taken at 12:00 UTC,
which corresponds roughly to the midpoint of GLORIA measurements.
In addition,
we used the cloud top product from the MODIS instrument that passed over our measurement
area in low Earth orbit around 13:08 UTC, which is only slightly beyond GLORIA's measurement
period and is still reasonably close to compare the cloud top altitudes. However,
the horizontal position might have been shifted due to advection, and small clouds may also appear and disappear due to condensation and evaporation.
Figure <xref ref-type="fig" rid="Ch1.F15"/> shows the level 2 cloud top altitude product.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><label>Figure 14</label><caption><p id="d1e3433">Two images taken by SEVIRI on Meteosat on 18 September 2017 at
12:00 UTC. Panel <bold>(a)</bold> shows the 0.8 <inline-formula><mml:math id="M172" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> visible channel in a relative scale, and <bold>(b)</bold> shows the 12.0 <inline-formula><mml:math id="M173" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> infrared channel as brightness temperature. The three red ellipses mark areas
of interest. Hatched areas indicate missing data.</p></caption>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f14.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><?xmltex \currentcnt{15}?><label>Figure 15</label><caption><p id="d1e3471">The cloud top altitude L2 product of MODIS on TERRA taken on 18th September 2017 around 13:08 UTC. White indicates no recognized cloud. The three red ellipses mark areas of interest. Hatched areas indicate missing data.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/13/7025/2020/amt-13-7025-2020-f15.png"/>

      </fig>

      <p id="d1e3480">We focus first on region A in Figs. <xref ref-type="fig" rid="Ch1.F13"/>,
<xref ref-type="fig" rid="Ch1.F14"/>, and <xref ref-type="fig" rid="Ch1.F15"/>. The GLORIA radiance and
extinction data show here an optically thick cloud within the jet stream,
vertically ranging over several kilometers and topping out at <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">11</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. This agrees with the MODIS cloud top data (mostly 10.5 <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, with some pixels slightly above 11.0 <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>) and is also consistent with the low
brightness temperatures (<inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">260</mml:mn></mml:mrow></mml:math></inline-formula> K) in the SEVIRI 12 <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> band.
In the horizontal, both SEVIRI and MODIS see the high-altitude cloud in the
same position, filling approximately the same area in region A and indicating
no significant horizontal movement between both measurements. However, the
GLORIA measurements fill a larger fraction of region A, which we attribute
to the horizontal and temporal smearing of the retrieval (also, here, a fast-moving satellite would be subject to less temporal smearing due to a changing scene). The SEVIRI time series shows that the front is moving quickly eastwards, and the 12:15 UTC image agrees already much better with our data (please note that the images containing most information were taken around 12:22 UTC pointing at 126<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in relation to aircraft heading).</p>
      <p id="d1e3553">Second, we compare the structures found in region B in the same figures.
There is a cloud stretching
in a north–south direction for several hundreds of kilometers, with a brightness temperature of
<inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mn mathvariant="normal">272</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> K according to SEVIRI. The structure and location of the cloud
visible in SEVIRI data compare favorably with a cloud located at the same
horizontal position at 10 to 10.75 km altitude in the GLORIA extinction
retrieval (only one layer is depicted in Fig. <xref ref-type="fig" rid="Ch1.F13"/>). The
magnitude of derived extinction indicates that the cloud is quite<?pagebreak page7041?> transparent in
the nadir view such that the brightness temperature of SEVIRI is certainly largely
caused by warmer air and haze of lower altitudes. This cloud
(<inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> thick, with an extinction of <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">0.014</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M185" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
hence should reduce the measured nadir brightness temperature by <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1.3</mml:mn></mml:mrow></mml:math></inline-formula> K, which
is roughly consistent with the difference of 1.5 K observed by SEVIRI between the cloud and surrounding air. Please note that the cirrus cloud is well visible in the optical regime in Fig. <xref ref-type="fig" rid="Ch1.F11"/>. In addition, MODIS sees quite a similar cloud but
assigns it a cloud top altitude of below 1000 m, consistent with the high
brightness temperature visible in SEVIRI. For these thin layers of cirrus, a
limb sounder provides much higher accuracy in cloud top determination than
state-of-the-art cloud top products derived from nadir sounders <xref ref-type="bibr" rid="bib1.bibx61" id="paren.65"/>.</p>
      <p id="d1e3628">Third, region C is discussed. In contrast to the other, larger clouds, GLORIA
detected very small clouds, bringing it to its spatial detection limits, as these
clouds are small enough to fall into the gaps of the horizontal scans. However,
the measurements indicate very thin cirrus clouds at an altitude of 12
to 13 <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. The retrieval assembles the measurements in a region with
small, spotty clouds of differing optical thickness with a top altitude of
12.75 <inline-formula><mml:math id="M188" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>, which coincides with the cold point tropopause having a
temperature here of <inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">210</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M190" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:math></inline-formula>. While SEVIRI and MODIS show similar small
patchy clouds in region C, it is more difficult to assign the high-altitude
clouds retrieved from GLORIA. The cloud feature at the southern tip of
region C agrees with a cloud feature measured by SEVIRI and MODIS. While
the low brightness temperature of SEVIRI's 12 <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> channel indicates a
high-altitude cloud, as in region A, the MODIS cloud top altitude is below
2 km. From this discrepancy we deduce that these patchy clouds are probably
too small and/or optically thin for IR nadir measurements to properly assign
a cloud top altitude.
While some of these have a comparably low
brightness temperature of 265 K (the bright spot at the lowermost corner of
region C), it is quite different from the 210 K corresponding to the altitude
of the clouds detected by GLORIA. Due to the location close to the flight path,
it could even be that the clouds that are visible in SEVIRI are unrelated
clouds at lower altitudes as
they would be outside the field of view of GLORIA. While the large cloud of
region B was detected by MODIS, albeit at much too low an altitude, these even
thinner clouds have likely been missed totally. There are no high clouds in the
MODIS data in region C, and it is not easy to construct a relationship between
the very small low clouds in region C in MODIS and our high clouds.</p>
</sec>
<?pagebreak page7042?><sec id="Ch1.S6" sec-type="conclusions">
  <label>6</label><title>Conclusions</title>
      <p id="d1e3683">We presented a new cloud index product, the convex hull cloud
index, which can exploit the higher measurement density of current and future
oversampling limb sounders. While it cannot improve upon the cloud
identification for older limb sounders such as MIPAS, it offers a significantly better cloud identification for higher measurement densities. We could show that
it can properly locate clouds along the line of sight for many cases involving
cirrus clouds and thus reduce the number of false positive cloud detection
events by about 30 %. This method does not require a radiative transfer model
and is computationally very cheap.</p>
      <p id="d1e3686">In addition, we introduced a tomographic extinction retrieval for cloud detection
based on recent advances in retrieval techniques for limb sounders. The method
uses the same algorithms and models used for 3-D temperature and trace gas
reconstructions. In its current state, the
required computational time is small compared to the measurement time, thus allowing
for real-time application. The tomographic extinction retrieval generated a
statistically better result compared to the color ratio methods, with a reduction
of false positive detection events of more than 60 % compared to the standard
cloud index. It excels in optically thin conditions but could deal well with
all typical cirrus clouds in the upper troposphere. For optically thick
conditions present at lower altitudes, the algorithms are naturally limited by the
lack of information on the measurements by the limb sounders. Here, synergy with
available nadir sounders could be exploited.</p>
      <p id="d1e3689">We finally applied the extinction retrieval to real measurements by the GLORIA
limb sounder and could reconstruct several high- and low-altitude clouds in three
dimensions. The vertical and horizontal position of these clouds were compared to
images of the SEVIRI instrument and the cloud top altitude product based on MODIS
data. We found good agreement in the general structure of the detected thick
cirrus clouds. For thinner cirrus clouds, horizontal extent agreed, but vertical
positioning disagreed. For very small and high cirrus clouds, no strong
correlation was found between the three products. Determining the cloud top
altitude of the reconstructed clouds from GLORIA measurements is easily feasible,
with an accuracy of less than 300 <inline-formula><mml:math id="M192" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, while the horizontal positioning is
less certain. Due to the tomographic measurement principle, a resolution of 30 to
70 <inline-formula><mml:math id="M193" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> can be achieved, which may be further worsened depending on
advection due to strong winds.</p>
      <p id="d1e3708">In summary, we have shown that tomographic reconstruction schemes applied to
densely sampled limb sounding observations allow a wealth of
information to be extracted on high clouds, reaching beyond what standard methods can achieve.
It demonstrates that these kind of observations are well suited to collect
information on high clouds which are not accessible by other kinds of global
measurements.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e3715">The simulations and retrievals can be requested from the author.</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e3721">JU wrote most of the paper. CLaMS ICE simulations were contributed by RS, CR,
and MK. SEVIRI data were analyzed and prepared by IB. Information necessary for
MIPAS simulations was contributed by MH. Algorithms and retrievals were
developed and executed by JU. CALIOP data and extinction conversion were
contributed by RS. Expertise on cloud top altitude estimation from IR limb
emission measurements was contributed by SG. MR coordinated the WISE campaign
and the HALO flight shown. All co-authors read the paper and contributed
improvements and small sections.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e3727">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="sistatement"><title>Special issue statement</title>

      <p id="d1e3733">This article is part of the special issue “New developments in atmospheric Limb measurements: Instruments, Methods and science applications (AMT/ACP inter-journal SI)”, resulting from the conference limb workshop, Greifswald, Germany, 4–7 June 2019, as well as of the special issue “WISE: Wave-driven isentropic exchange in the extratropical upper stratosphere and lower stratosphere”.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3739">The authors are grateful to ECMWF for providing operational analysis and
forecasts as well as reanalysis data through the MARS server. The authors would like to thank Jens-Uwe Grooß (FZJ) for the implementation of the cirrus model into CLaMS and support with the handling of the model. The authors
gratefully acknowledge the computing time granted through JARA on the
supercomputer JURECA <xref ref-type="bibr" rid="bib1.bibx23" id="text.66"/> at Forschungszentrum Jülich. The
authors also acknowledge the teams of MODIS and SEVIRI for providing their data products. The GLORIA measurements and retrievals are based on the
efforts of all members of the GLORIA team, including the technology
institutes ZEA-1 and ZEA-2 at Forschungszentrum Jülich and the Institute for Data Processing and Electronics at the Karlsruhe Institute of Technology. We would also like to thank the pilots and ground-support team at the Flight
Experiments facility of the Deutsches Zentrum für Luft- und Raumfahrt     (DLR-FX).</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e3747">This research has been supported by the Deutsche Forschungsgemeinschaft (DFG) in the “Cirrus clouds in the extra-tropical tropopause and lowermost stratosphere region” (CiTroS) project (project no. SP 969/1-1, part of the HALO SPP 1294) and the European Space Agency (ESA) in the “Characterisation of particulates in the upper troposphere/lower stratosphere” project (grant no. 400011677/16/NL/LvH). <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>The article processing charges for this open-access <?xmltex \hack{\newline}?> publication  were covered by a Research <?xmltex \hack{\newline}?> Centre of the Helmholtz Association.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e3760">This paper was edited by Chris McLinden and reviewed by two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Beer(1992)</label><?label beer_1992?><mixed-citation>
Beer, R.: Remote Sensing by Fourier Transform Spectrometry, Wiley-Interscience, New York, 1992.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>NASA/LARC/SD/ASDC(2018)</label><?label calipso_2018?><mixed-citation>NASA/LARC/SD/ASDC: CALIPSO Lidar Level 2 5km Cloud Profile data, Provisional V3-01, NASA Langley Atmospheric Science Data Center DAAC, <ext-link xlink:href="https://doi.org/10.5067/CALIOP/CALIPSO/CAL_LID_L2_05KMCPRO-PROV-V3-01_L2-003.01">https://doi.org/10.5067/CALIOP/CALIPSO/CAL_LID_L2_</ext-link><?xmltex \hack{\break}?>
<ext-link xlink:href="https://doi.org/10.5067/CALIOP/CALIPSO/CAL_LID_L2_05KMCPRO-PROV-V3-01_L2-003.01">05KMCPRO-PROV-V3-01_L2-003.01</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Carlotti et al.(2001)</label><?label carlotti_2001?><mixed-citation>Carlotti, M., Dinelli, B. M., Raspollini, P., and Ridolfi, M.: Geo-fit approach to the analysis of limb-scanning satellite measurements, Appl. Optics, 40, 1872–1885, <ext-link xlink:href="https://doi.org/10.1364/AO.40.001872" ext-link-type="DOI">10.1364/AO.40.001872</ext-link>, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Castelli et al.(2011)</label><?label castelli_2011?><mixed-citation>Castelli, E., Dinelli, B., Carlotti, M., Arnone, E., Papandrea, E., and  Ridolfi, M.: Retrieving cloud geometrical extents from MIPAS/ENVISAT measurements with a 2-D tomographic approach, Opt. Express, 19,
20704–20721, <ext-link xlink:href="https://doi.org/10.1364/OE.19.020704" ext-link-type="DOI">10.1364/OE.19.020704</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Christensen et al.(2015)</label><?label christensen_2015?><mixed-citation>Christensen, O. M., Eriksson, P., Urban, J., Murtagh, D., Hultgren, K., and Gumbel, J.: Tomographic retrieval of water vapour and temperature around polar mesospheric clouds using Odin-SMR, Atmos. Meas. Tech., 8, 1981–1999, <ext-link xlink:href="https://doi.org/10.5194/amt-8-1981-2015" ext-link-type="DOI">10.5194/amt-8-1981-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Dee et al.(2011)</label><?label dee_2011?><mixed-citation>Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P., Kobayashi, S., Andrae, U., Balmaseda, M. A., Balsamo, G., Bauer, P., Bechtold, P., Beljaars, A. C. M., van de Berg, L., Bidlot, J., Bormann, N., Delsol, C., Dragani, R., Fuentes, M., Geer, A. J., Haimberger, L., Healy, S. B., Hersbach, H., Hòlm, E. V., Isaksen, L., Kållberg, P., Köhler, M., Matricardi, M., McNally, A. P., Monge-Sanz, B. M., Morcrette, J.-J., Park, B.-K., Peubey, C., de Rosnay, P., Tavolato, C., Thépaut, J.-N., and Vitart, F.: The ERA-Interim reanalysis: configuration and performance of the data assimilation system, Q. J. Roy. Meteor. Soc., 137, 553–597, <ext-link xlink:href="https://doi.org/10.1002/qj.828" ext-link-type="DOI">10.1002/qj.828</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Dudhia(2017)</label><?label dudhia_2017?><mixed-citation>Dudhia, A.: The Reference Forward Model (RFM), J. Quant. Spectrosc. Ra., 186, 243–253, <ext-link xlink:href="https://doi.org/10.1016/j.jqsrt.2016.06.018" ext-link-type="DOI">10.1016/j.jqsrt.2016.06.018</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>ESA(2012)</label><?label esa_2012?><mixed-citation>
ESA: Report for Mission Selection: PREMIER, Europea
n Space Agency, Noordwijk,  The Netherland, SP-1324/3, 234 pp., 2012.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Fischer et al.(2008)</label><?label fischer_2008?><mixed-citation>Fischer, H., Birk, M., Blom, C., Carli, B., Carlotti, M., von Clarmann, T., Delbouille, L., Dudhia, A., Ehhalt, D., Endemann, M., Flaud, J. M., Gessner, R., Kleinert, A., Koopman, R., Langen, J., López-Puertas, M., Mosner, P., Nett, H., Oelhaf, H., Perron, G., Remedios, J., Ridolfi, M., Stiller, G., and Zander, R.: MIPAS: an instrument for atmospheric and climate research, Atmos. Chem. Phys., 8, 2151–2188, <ext-link xlink:href="https://doi.org/10.5194/acp-8-2151-2008" ext-link-type="DOI">10.5194/acp-8-2151-2008</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Friedl-Vallon et al.(2014)</label><?label friedl-vallon_2014?><mixed-citation>Friedl-Vallon, F., Gulde, T., Hase, F., Kleinert, A., Kulessa, T., Maucher, G., Neubert, T., Olschewski, F., Piesch, C., Preusse, P., Rongen, H., Sartorius, C., Schneider, H., Schönfeld, A., Tan, V., Bayer, N., Blank, J., Dapp, R., Ebersoldt, A., Fischer, H., Graf, F., Guggenmoser, T., Höpfner, M., Kaufmann, M., Kretschmer, E., Latzko, T., Nordmeyer, H., Oelhaf, H., Orphal, J., Riese, M., Schardt, G., Schillings, J., Sha, M. K., Suminska-Ebersoldt, O., and Ungermann, J.: Instrument concept of the imaging Fourier transform spectrometer GLORIA, Atmos. Meas. Tech., 7, 3565–3577, <ext-link xlink:href="https://doi.org/10.5194/amt-7-3565-2014" ext-link-type="DOI">10.5194/amt-7-3565-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Gayet et al.(2004)</label><?label gayet_2004?><mixed-citation>Gayet, J.-F., Ovarlez, J., Shcherbakov, V., Ström, J., Schumann, U., Minikin,  A., Auriol, F., Petzold, A., and Monier, M.: Cirrus cloud microphysical and  optical properties at southern and northern midlatitudes during the INCA  experiment, J. Geophys. Res., 109, D20206, <ext-link xlink:href="https://doi.org/10.1029/2004JD004803" ext-link-type="DOI">10.1029/2004JD004803</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Gordley and Russell(1981)</label><?label gordley_1981?><mixed-citation>Gordley, L. L. and Russell, J. M.: Rapid inversion of limb radiance data using an emissivity growth approximation, Appl. Optics, 20, 807–813,  <ext-link xlink:href="https://doi.org/10.1364/AO.20.000807" ext-link-type="DOI">10.1364/AO.20.000807</ext-link>, 1981.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Griessbach et al.(2013)</label><?label griessbach_2013?><mixed-citation>Griessbach, S., Hoffmann, L., Höpfner, M., Riese, M., and Spang, R.:  Scattering in infrared radiative transfer: A comparison between the  spectrally averaging model JURASSIC and the line-by-line model KOPRA, J.  Quant. Spectrosc. Ra., 127, 102–118, <ext-link xlink:href="https://doi.org/10.1016/j.jqsrt.2013.05.004" ext-link-type="DOI">10.1016/j.jqsrt.2013.05.004</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Griessbach et al.(2014)</label><?label griessbach_2014?><mixed-citation>Griessbach, S., Hoffmann, L., Spang, R., and Riese, M.: Volcanic ash detection with infrared limb sounding: MIPAS observations and radiative transfer simulations, Atmos. Meas. Tech., 7, 1487–1507, <ext-link xlink:href="https://doi.org/10.5194/amt-7-1487-2014" ext-link-type="DOI">10.5194/amt-7-1487-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Griessbach et al.(2016)</label><?label griessbach_2016?><mixed-citation>Griessbach, S., Hoffmann, L., Spang, R., von Hobe, M., Müller, R., and Riese, M.: Infrared limb emission measurements of aerosol in the troposphere and stratosphere, Atmos. Meas. Tech., 9, 4399–4423, <ext-link xlink:href="https://doi.org/10.5194/amt-9-4399-2016" ext-link-type="DOI">10.5194/amt-9-4399-2016</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Griessbach et al.(2020a)</label><?label griessbach_2020?><mixed-citation>Griessbach, S., Hoffmann, L., Spang, R., Achtert, P., von Hobe, M., Mateshvili, N., Müller, R., Riese, M., Rolf, C., Seifert, P., and Vernier, J.-P.: Aerosol and cloud top height information of Envisat MIPAS measurements, Atmos. Meas. Tech., 13, 1243–1271, <ext-link xlink:href="https://doi.org/10.5194/amt-13-1243-2020" ext-link-type="DOI">10.5194/amt-13-1243-2020</ext-link>, 2020a.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Griessbach et al.(2020b)</label><?label griessbach_2020_inpreparation?><mixed-citation>
Griessbach, S., Dinelli, B. M., Höpfner, M., Hoffmann, L., Kahnert, M., Krämer, M., Maestri, T., Siddans, R., Spang, R., and Ungermann, J.: Aerosol and cloud detection capabilities of infrared  limb emission measurements, Atmos. Meas. Tech., in preparation, 2020b.</mixed-citation></ref>
      <ref id="bib1.bibx18"><?xmltex \def\ref@label{{Hase and H{\"{o}}pfner(1999)}}?><label>Hase and Höpfner(1999)</label><?label hase_1999?><mixed-citation>Hase, F. and Höpfner, M.: Atmospheric ray path modeling for radiative  transfer algorithms, Appl. Optics, 38, 3129–3133,  <ext-link xlink:href="https://doi.org/10.1364/AO.38.003129" ext-link-type="DOI">10.1364/AO.38.003129</ext-link>, 1999.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Heymsfield et al.(2017)</label><?label heymsfield_2017?><mixed-citation>Heymsfield, A. J., Krämer, M., Luebke, A., Brown, P., Cziczo, D. J.,  Franklin, C., Lawson, P., Lohmann, U., McFarquhar, G., Ulanowski, Z., and  Van Tricht, K.: Cirrus Clouds, Meteor. Mon., 58, 2.1–2.26,  <ext-link xlink:href="https://doi.org/10.1175/AMSMONOGRAPHS-D-16-0010.1" ext-link-type="DOI">10.1175/AMSMONOGRAPHS-D-16-0010.1</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Hoffmann(2006)</label><?label hoffmann_2006?><mixed-citation>
Hoffmann, L.: Schnelle Spurengasretrieval für das Satellitenexperiment  Envisat MIPAS, Forschungszentrum Jülich, Jülich, Germany, Tech. Rep. JUEL-4207, ISSN 0944-2952, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx21"><?xmltex \def\ref@label{{H{\"{o}}pfner et~al.(2019)}}?><label>Höpfner et al.(2019)</label><?label hoepfner_2019?><mixed-citation>Höpfner, M., Ungermann, J., Borrmann, S., Wagner, R., Spang, R., Riese, M., Stiller, G., Appel, O., Batenburg, A. M., Bucci, S., Cairo, F., Dragoneas, A., Friedl-Vallon, F., Hünig, A., Johansson, S., Krasauskas, L., Legras, B., Leisner, T., Mahnke, C., Möhler, O., Molleker, S., Müller, R., Neubert, T., Orphal, J., Preusse, P., Rex, M., Saathoff, H., Stroh, F., Weigel, R., and Wohltmann, I.: Ammonium nitrate particles formed in upper troposphere from ground ammonia sources during Asian monsoons, Nat.  Geosci., 12, 1752–0908, <ext-link xlink:href="https://doi.org/10.1038/s41561-019-0385-8" ext-link-type="DOI">10.1038/s41561-019-0385-8</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>IPCC(2007)</label><?label ipcc_2007?><mixed-citation>
IPCC: Climate Change 2007: The Physical Science Basis. Contributions of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2007.</mixed-citation></ref>
      <?pagebreak page7044?><ref id="bib1.bibx23"><?xmltex \def\ref@label{{{J\"{u}lich Supercomputing Centre}(2018)}}?><label>Jülich Supercomputing Centre(2018)</label><?label jsc_2018?><mixed-citation>Jülich Supercomputing Centre: JURECA: Modular supercomputer at  Jülich Supercomputing Centre, Journal of large-scale research  facilities, 4, A132, <ext-link xlink:href="https://doi.org/10.17815/jlsrf-4-121-1" ext-link-type="DOI">10.17815/jlsrf-4-121-1</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Kalicinsky et al.(2013)</label><?label kalicinsky_2013?><mixed-citation>Kalicinsky, C., Grooß, J.-U., Günther, G., Ungermann, J., Blank, J., Höfer, S., Hoffmann, L., Knieling, P., Olschewski, F., Spang, R., Stroh, F., and Riese, M.: Observations of filamentary structures near the vortex edge in the Arctic winter lower stratosphere, Atmos. Chem. Phys., 13, 10859–10871, <ext-link xlink:href="https://doi.org/10.5194/acp-13-10859-2013" ext-link-type="DOI">10.5194/acp-13-10859-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Kent et al.(1997)</label><?label kent_1997?><mixed-citation>Kent, G. S., Winker, D. M., Vaughan, M. A., Wang, P.-H., and Skeens, K. M.:  Simulation of Stratospheric Aerosol and Gas Experiment (SAGE) II cloud  measurements using airborne lidar data, J. Geophys. Res., 102,  21795–21807, <ext-link xlink:href="https://doi.org/10.1029/97JD01390" ext-link-type="DOI">10.1029/97JD01390</ext-link>, 1997.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Kleinert et al.(2014)</label><?label kleinert_2014?><mixed-citation>Kleinert, A., Friedl-Vallon, F., Guggenmoser, T., Höpfner, M., Neubert, T., Ribalda, R., Sha, M. K., Ungermann, J., Blank, J., Ebersoldt, A., Kretschmer, E., Latzko, T., Oelhaf, H., Olschewski, F., and Preusse, P.: Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra, Atmos. Meas. Tech., 7, 4167–4184, <ext-link xlink:href="https://doi.org/10.5194/amt-7-4167-2014" ext-link-type="DOI">10.5194/amt-7-4167-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Konopka et al.(2007)</label><?label konopka_2007?><mixed-citation>Konopka, P., Günther, G., Müller, R., dos Santos, F. H. S., Schiller, C., Ravegnani, F., Ulanovsky, A., Schlager, H., Volk, C. M., Viciani, S., Pan, L. L., McKenna, D.-S., and Riese, M.: Contribution of mixing to upward transport across the tropical tropopause layer (TTL), Atmos. Chem. Phys., 7, 3285–3308, <ext-link xlink:href="https://doi.org/10.5194/acp-7-3285-2007" ext-link-type="DOI">10.5194/acp-7-3285-2007</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Kox et al.(2014)</label><?label kox_2014?><mixed-citation>Kox, S., Bugliaro, L., and Ostler, A.: Retrieval of cirrus cloud optical thickness and top altitude from geostationary remote sensing, Atmos. Meas. Tech., 7, 3233–3246, <ext-link xlink:href="https://doi.org/10.5194/amt-7-3233-2014" ext-link-type="DOI">10.5194/amt-7-3233-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx29"><?xmltex \def\ref@label{{Kr\"{a}mer et~al.(2020)}}?><label>Krämer et al.(2020)</label><?label kraemer_2020_acpd?><mixed-citation>Krämer, M., Rolf, C., Spelten, N., Afchine, A., Fahey, D., Jensen, E., Khaykin, S., Kuhn, T., Lawson, P., Lykov, A., Pan, L. L., Riese, M., Rollins, A., Stroh, F., Thornberry, T., Wolf, V., Woods, S., Spichtinger, P., Quaas, J., and Sourdeval, O.: A microphysics guide to cirrus – Part 2: Climatologies of clouds and humidity from observations, Atmos. Chem. Phys., 20, 12569–12608, <ext-link xlink:href="https://doi.org/10.5194/acp-20-12569-2020" ext-link-type="DOI">10.5194/acp-20-12569-2020</ext-link>, 2020.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Krisch et al.(2017)</label><?label krisch_2017?><mixed-citation>Krisch, I., Preusse, P., Ungermann, J., Dörnbrack, A., Eckermann, S. D., Ern, M., Friedl-Vallon, F., Kaufmann, M., Oelhaf, H., Rapp, M., Strube, C., and Riese, M.: First tomographic observations of gravity waves by the infrared limb imager GLORIA, Atmos. Chem. Phys., 17, 14937–14953, <ext-link xlink:href="https://doi.org/10.5194/acp-17-14937-2017" ext-link-type="DOI">10.5194/acp-17-14937-2017</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Krisch et al.(2018)</label><?label krisch_2018?><mixed-citation>Krisch, I., Ungermann, J., Preusse, P., Kretschmer, E., and Riese, M.: Limited angle tomography of mesoscale gravity waves by the infrared limb-sounder GLORIA, Atmos. Meas. Tech., 11, 4327–4344, <ext-link xlink:href="https://doi.org/10.5194/amt-11-4327-2018" ext-link-type="DOI">10.5194/amt-11-4327-2018</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Levenberg(1944)</label><?label levenberg_1944?><mixed-citation>
Levenberg, K.: A method for the solution of certain nonlinear problems in least squares, Q. Appl. Math., 2, 164–168, 1944.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Livesey et al.(2006)</label><?label livesey_2006?><mixed-citation>Livesey, N., Van Snyder, W., Read, W., and Wagner, P.: Retrieval algorithms for the EOS Microwave limb sounder (MLS), IEEE T. Geosci. Remote., 44,
1144–1155, <ext-link xlink:href="https://doi.org/10.1109/TGRS.2006.872327" ext-link-type="DOI">10.1109/TGRS.2006.872327</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Livesey and Read(2000)</label><?label livesey_2000?><mixed-citation>
Livesey, N. J. and Read, W. G.: Direct Retrieval of Line-of-Sight Atmospheric
Structure from Limb Sounding Observations, Geophys. Res. Lett., 27, 891–894,
2000.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Luebke et al.(2016)</label><?label luebke_2016?><mixed-citation>Luebke, A. E., Afchine, A., Costa, A., Grooß, J.-U., Meyer, J., Rolf, C., Spelten, N., Avallone, L. M., Baumgardner, D., and Krämer, M.: The origin of midlatitude ice clouds and the resulting influence on their microphysical properties, Atmos. Chem. Phys., 16, 5793–5809, <ext-link xlink:href="https://doi.org/10.5194/acp-16-5793-2016" ext-link-type="DOI">10.5194/acp-16-5793-2016</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>McKenna et al.(2002)</label><?label mckenna_2002a?><mixed-citation>McKenna, D. S., Konopka, P., Grooß, J.-U., Günther, G., Müller, R., Spang, R., Offermann, D., and Orsolini, Y.: A new Chemical Lagrangian Model of the Stratosphere (CLaMS) 1. Formulation of advection and mixing, J.  Geophys. Res., 107, ACH 15-1–ACH 15-15, <ext-link xlink:href="https://doi.org/10.1029/2000JD000114" ext-link-type="DOI">10.1029/2000JD000114</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Mejia et al.(2018)</label><?label mejia_2018?><mixed-citation>Mejia, F. A., Kurtz, B., Levis, A., Íñigo de la Parra, and Kleissl, J.: Cloud  tomography applied to sky images: A virtual testbed, Sol. Energy, 176, 287–300, <ext-link xlink:href="https://doi.org/10.1016/j.solener.2018.10.023" ext-link-type="DOI">10.1016/j.solener.2018.10.023</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Nazaryan et al.(2008)</label><?label nazaryan_2008?><mixed-citation>Nazaryan, H., McCormick, M. P., and Menzel, W. P.: Global characterization of  cirrus clouds using CALIPSO data, J. Geophys. Res., 113, D16211,  <ext-link xlink:href="https://doi.org/10.1029/2007JD009481" ext-link-type="DOI">10.1029/2007JD009481</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Norton and Beer(1977)</label><?label norton_1976?><mixed-citation>
Norton, R. H. and Beer, R.: Errata: New Apodizing Functions For Fourier Spectrometry, J. Opt. Soc. Am., 67, 419–419, 1977.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Platnick et al.(2015)</label><?label platnick_2015_data?><mixed-citation>Platnick, S., Ackerman, S., King, M. D., Meyer, K., Menzel, W. P., Holz, R. E. Baum, B. A., and Yang, P.: MODIS Atmosphere L2 Cloud Product (06_L2), NASA MODIS Adaptive Processing System, Goddard Space Flight Center, USA, <ext-link xlink:href="https://doi.org/10.5067/MODIS/MOD06_L2.061" ext-link-type="DOI">10.5067/MODIS/MOD06_L2.061</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Platnick et al.(2017)</label><?label platnick_2017?><mixed-citation>
Platnick, S., Meyer, K. G., King, M. D., Wind, G., Amarasinghe, N.,  Marchant, B., Arnold, G. T., Zhang, Z., Hubanks, P. A., Holz,  R. E., Yang, P., Ridgway, W. L., and Riedi, J.: The MODIS Cloud  Optical and Microphysical Products: Collection 6 Updates and Examples From  Terra and Aqua, IEEE T. Geosci. Remote., 55, 502–525, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Ploeger et al.(2010)</label><?label ploeger_2010?><mixed-citation>Ploeger, F., Konopka, P., Günther, G., Grooß, J.-U., and Müller,  R.: Impact of the vertical velocity scheme on modeling transport in the  tropical tropopause layer, J. Geophys. Res., 115, D03301,  <ext-link xlink:href="https://doi.org/10.1029/2009JD012023" ext-link-type="DOI">10.1029/2009JD012023</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Remedios et al.(2007)</label><?label remedios_2007?><mixed-citation>Remedios, J. J., Leigh, R. J., Waterfall, A. M., Moore, D. P., Sembhi, H., Parkes, I., Greenhough, J., Chipperfield, M. P., and Hauglustaine, D.: MIPAS reference atmospheres and comparisons to V4.61/V4.62 MIPAS level 2 geophysical data sets, Atmos. Chem. Phys. Discuss., 7, 9973–10017, <ext-link xlink:href="https://doi.org/10.5194/acpd-7-9973-2007" ext-link-type="DOI">10.5194/acpd-7-9973-2007</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Riese et al.(2014)</label><?label riese_2014?><mixed-citation>Riese, M., Oelhaf, H., Preusse, P., Blank, J., Ern, M., Friedl-Vallon, F., Fischer, H., Guggenmoser, T., Höpfner, M., Hoor, P., Kaufmann, M., Orphal, J., Plöger, F., Spang, R., Suminska-Ebersoldt, O., Ungermann, J., Vogel, B., and Woiwode, W.: Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) scientific objectives, Atmos. Meas. Tech., 7, 1915–1928, <ext-link xlink:href="https://doi.org/10.5194/amt-7-1915-2014" ext-link-type="DOI">10.5194/amt-7-1915-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Schmetz et al.(2002)</label><?label schmetz_2002?><mixed-citation>Schmetz, J., Pili, P., Tjemkes, S., Just, D., Kerkmann, J., Rota, S., and  Ratier, A.: AN INTRODUCTION TO METEOSAT SECOND GENERATION (MSG), B. Am. Meteorol. Soc., 83, 977–992,   <ext-link xlink:href="https://doi.org/10.1175/1520-0477(2002)083&lt;0977:AITMSG&gt;2.3.CO;2" ext-link-type="DOI">10.1175/1520-0477(2002)083&lt;0977:AITMSG&gt;2.3.CO;2</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Sembhi et al.(2012)</label><?label sembhi_2012?><mixed-citation>Sembhi, H., Remedios, J., Trent, T., Moore, D. P., Spang, R., Massie, S., and Vernier, J.-P.: MIPAS detection of cloud and aerosol particle occurrence in the UTLS with comparison to HIRDLS and CALIOP, Atmos. Meas. Tech., 5, 2537–2553, <ext-link xlink:href="https://doi.org/10.5194/amt-5-2537-2012" ext-link-type="DOI">10.5194/amt-5-2537-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Spang et al.(2001a)</label><?label spang_2001a?><mixed-citation>
Spang, R., Riese, M., Eidmann, G., Offermann, D., and Wang, P. H.: A Detection Method for Cirrus Clouds Using CRISTA 1 and 2 Measurements, Adv. Space Res., 27, 1629–1634, 2001a.</mixed-citation></ref>
      <?pagebreak page7045?><ref id="bib1.bibx48"><label>Spang et al.(2001b)</label><?label spang_2001b?><mixed-citation>
Spang, R., Riese, M., and Offermann, D.: CRISTA-2 observations of the south  polar vortex in winter 1997: A new dataset for polar process studies,  Geophys. Res. Lett., 28, 3159–3162, 2001b.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Spang et al.(2008)</label><?label spang_2008?><mixed-citation>Spang, R., Hoffmann, L., Kullmann, A., Olschewski, F., Preusse, P., Knieling,  P., Schroeder, S., Stroh, F., Weigel, K., and Riese, M.: High resolution limb  observations of clouds by the CRISTA-NF experiment during the SCOUT-O3  tropical aircraft campaign, Adv. Space Res., 42, 1765–1775,  <ext-link xlink:href="https://doi.org/10.1016/j.asr.2007.09.036" ext-link-type="DOI">10.1016/j.asr.2007.09.036</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Spang et al.(2012)</label><?label spang_2012?><mixed-citation>Spang, R., Arndt, K., Dudhia, A., Höpfner, M., Hoffmann, L., Hurley, J., Grainger, R. G., Griessbach, S., Poulsen, C., Remedios, J. J., Riese, M., Sembhi, H., Siddans, R., Waterfall, A., and Zehner, C.: Fast cloud parameter retrievals of MIPAS/Envisat, Atmos. Chem. Phys., 12, 7135–7164, <ext-link xlink:href="https://doi.org/10.5194/acp-12-7135-2012" ext-link-type="DOI">10.5194/acp-12-7135-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>Spang et al.(2015)</label><?label spang_2015?><mixed-citation>Spang, R., Günther, G., Riese, M., Hoffmann, L., Müller, R., and Griessbach, S.: Satellite observations of cirrus clouds in the Northern Hemisphere lowermost stratosphere, Atmos. Chem. Phys., 15, 927–950, <ext-link xlink:href="https://doi.org/10.5194/acp-15-927-2015" ext-link-type="DOI">10.5194/acp-15-927-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Spichtinger and Gierens(2009)</label><?label spichtinger_2009?><mixed-citation>Spichtinger, P. and Gierens, K. M.: Modelling of cirrus clouds – Part 1a: Model description and validation, Atmos. Chem. Phys., 9, 685–706, <ext-link xlink:href="https://doi.org/10.5194/acp-9-685-2009" ext-link-type="DOI">10.5194/acp-9-685-2009</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Steck et al.(2005)</label><?label steck_2005?><mixed-citation>Steck, T., Höpfner, M., von Clarmann, T., and Grabowski, U.: Tomographic  retrieval of atmospheric parameters from infrared limb emission observations, Appl. Optics, 44, 3291–3301, <ext-link xlink:href="https://doi.org/10.1364/AO.44.003291" ext-link-type="DOI">10.1364/AO.44.003291</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Tikhonov and Arsenin(1977)</label><?label tikhonov_1977?><mixed-citation>
Tikhonov, A. N. and Arsenin, V. Y.: Solutions of ill-posed problems, Winston,  Washington D.C., USA, 1977.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Ungermann et al.(2010)</label><?label ungermann_2010?><mixed-citation>Ungermann, J., Hoffmann, L., Preusse, P., Kaufmann, M., and Riese, M.: Tomographic retrieval approach for mesoscale gravity wave observations by the PREMIER Infrared Limb-Sounder, Atmos. Meas. Tech., 3, 339–354, <ext-link xlink:href="https://doi.org/10.5194/amt-3-339-2010" ext-link-type="DOI">10.5194/amt-3-339-2010</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Ungermann et al.(2011)</label><?label ungermann_2011?><mixed-citation>Ungermann, J., Blank, J., Lotz, J., Leppkes, K., Hoffmann, L., Guggenmoser, T., Kaufmann, M., Preusse, P., Naumann, U., and Riese, M.: A 3-D tomographic retrieval approach with advection compensation for the air-borne limb-imager GLORIA, Atmos. Meas. Tech., 4, 2509–2529, <ext-link xlink:href="https://doi.org/10.5194/amt-4-2509-2011" ext-link-type="DOI">10.5194/amt-4-2509-2011</ext-link>, 2011.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx57"><label>Ungermann et al.(2015)</label><?label ungermann_2015?><mixed-citation>Ungermann, J., Blank, J., Dick, M., Ebersoldt, A., Friedl-Vallon, F., Giez, A., Guggenmoser, T., Höpfner, M., Jurkat, T., Kaufmann, M., Kaufmann, S., Kleinert, A., Krämer, M., Latzko, T., Oelhaf, H., Olchewski, F., Preusse, P., Rolf, C., Schillings, J., Suminska-Ebersoldt, O., Tan, V., Thomas, N., Voigt, C., Zahn, A., Zöger, M., and Riese, M.: Level 2 processing for the imaging Fourier transform spectrometer GLORIA: derivation and validation of temperature and trace gas volume mixing ratios from calibrated dynamics mode spectra, Atmos. Meas. Tech., 8, 2473–2489, <ext-link xlink:href="https://doi.org/10.5194/amt-8-2473-2015" ext-link-type="DOI">10.5194/amt-8-2473-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>von Clarmann et al.(2003)</label><?label clarmann_2003b?><mixed-citation>von Clarmann, T., Glatthor, N., Grabowski, U., Höpfner, M., Kellmann, S.,  Kiefer, M., Linden, A., Tsidu, G. M., Milz, M., Steck, T., Stiller, G. P.,   Wang, D. Y., and Fischer, H.: Retrieval of temperature and tangent altitude   pointing from limb emission spectra recorded from space by the Michelson   Interferometer for Passive Atmospheric Sounding (MIPAS), J.  Geophys. Res., 108, 4736, <ext-link xlink:href="https://doi.org/10.1029/2003JD003602" ext-link-type="DOI">10.1029/2003JD003602</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>von Clarmann et al.(2009)</label><?label clarmann_2009?><mixed-citation>von Clarmann, T., De Clercq, C., Ridolfi, M., Höpfner, M., and Lambert, J.-C.: The horizontal resolution of MIPAS, Atmos. Meas. Tech., 2, 47–54, <ext-link xlink:href="https://doi.org/10.5194/amt-2-47-2009" ext-link-type="DOI">10.5194/amt-2-47-2009</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Weinreb and Neuendorffer(1973)</label><?label weinreb_1973?><mixed-citation>Weinreb, M. P. and Neuendorffer, A. C.: Method to Apply Homogeneous-path  Transmittance Models to Inhomogeneous Atmospheres, J. Atmos. Sci., 30,  662–666, <ext-link xlink:href="https://doi.org/10.1175/1520-0469(1973)030&lt;0662:MTAHPT&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0469(1973)030&lt;0662:MTAHPT&gt;2.0.CO;2</ext-link>, 1973.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Weisz et al.(2007)</label><?label weisz_2007?><mixed-citation>Weisz, E., Li, J., Menzel, W. P., Heidinger, A. K., Kahn, B. H., and Liu,  C.-Y.: Comparison of AIRS, MODIS, CloudSat and CALIPSO cloud top  height retrievals, Geophys. Res. Lett., 34, L17811, <ext-link xlink:href="https://doi.org/10.1029/2007GL030676" ext-link-type="DOI">10.1029/2007GL030676</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Winker et al.(2007)</label><?label winker_2007?><mixed-citation>Winker, D. M., Hunt, W. H., and McGill, M. J.: Initial performance assessment  of CALIOP, Geophys. Res. Lett., 34, L19803, <ext-link xlink:href="https://doi.org/10.1029/2007GL030135" ext-link-type="DOI">10.1029/2007GL030135</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx63"><label>Winker et al.(2009)</label><?label winker_2009?><mixed-citation>Winker, D. M., Vaughan, M. A., Omar, A., Hu, Y., Powell, K. A., Liu, Z., Hunt, W. H., and Young, S. A.: Overview of the CALIPSO Mission and CALIOP Data Processing Algorithms, J. Atmos. Ocean. Tech., 26, 2310–2323, <ext-link xlink:href="https://doi.org/10.1175/2009JTECHA1281.1" ext-link-type="DOI">10.1175/2009JTECHA1281.1</ext-link>, 2009.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>Cirrus cloud shape detection by tomographic extinction retrievals from infrared limb emission sounder measurements</article-title-html>
<abstract-html><p>An improved cloud-index-based method for the detection of clouds in limb    sounder data is presented that exploits the spatial overlap of measurements    to more precisely detect the location of (optically thin) clouds. A second    method based on a tomographic extinction retrieval is also presented. Using    CALIPSO data and a generic advanced infrared limb imaging instrument as    examples for a synthetic study, the new cloud index method has a better    horizontal resolution in comparison to the traditional cloud index and has a reduction of false positive cloud detection events by about 30&thinsp;%. The results for the extinction retrieval even show an improvement of 60&thinsp;%. In a second step, the extinction retrieval is applied to real 3-D    measurements of the airborne Gimballed Limb Observer for Radiance Imaging in the Atmosphere (GLORIA) taken during the    Wave-driven ISentropic Exchange (WISE) campaign to retrieve small-scale    cirrus clouds with high spatial accuracy.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Beer(1992)</label><mixed-citation>
Beer, R.: Remote Sensing by Fourier Transform Spectrometry, Wiley-Interscience, New York, 1992.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>NASA/LARC/SD/ASDC(2018)</label><mixed-citation>
NASA/LARC/SD/ASDC: CALIPSO Lidar Level 2 5km Cloud Profile data, Provisional V3-01, NASA Langley Atmospheric Science Data Center DAAC, <a href="https://doi.org/10.5067/CALIOP/CALIPSO/CAL_LID_L2_05KMCPRO-PROV-V3-01_L2-003.01" target="_blank">https://doi.org/10.5067/CALIOP/CALIPSO/CAL_LID_L2_</a>
<a href="https://doi.org/10.5067/CALIOP/CALIPSO/CAL_LID_L2_05KMCPRO-PROV-V3-01_L2-003.01" target="_blank">05KMCPRO-PROV-V3-01_L2-003.01</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Carlotti et al.(2001)</label><mixed-citation>
Carlotti, M., Dinelli, B. M., Raspollini, P., and Ridolfi, M.: Geo-fit approach to the analysis of limb-scanning satellite measurements, Appl. Optics, 40, 1872–1885, <a href="https://doi.org/10.1364/AO.40.001872" target="_blank">https://doi.org/10.1364/AO.40.001872</a>, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Castelli et al.(2011)</label><mixed-citation>
Castelli, E., Dinelli, B., Carlotti, M., Arnone, E., Papandrea, E., and  Ridolfi, M.: Retrieving cloud geometrical extents from MIPAS/ENVISAT measurements with a 2-D tomographic approach, Opt. Express, 19,
20704–20721, <a href="https://doi.org/10.1364/OE.19.020704" target="_blank">https://doi.org/10.1364/OE.19.020704</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Christensen et al.(2015)</label><mixed-citation>
Christensen, O. M., Eriksson, P., Urban, J., Murtagh, D., Hultgren, K., and Gumbel, J.: Tomographic retrieval of water vapour and temperature around polar mesospheric clouds using Odin-SMR, Atmos. Meas. Tech., 8, 1981–1999, <a href="https://doi.org/10.5194/amt-8-1981-2015" target="_blank">https://doi.org/10.5194/amt-8-1981-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Dee et al.(2011)</label><mixed-citation>
Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P., Kobayashi, S., Andrae, U., Balmaseda, M. A., Balsamo, G., Bauer, P., Bechtold, P., Beljaars, A. C. M., van de Berg, L., Bidlot, J., Bormann, N., Delsol, C., Dragani, R., Fuentes, M., Geer, A. J., Haimberger, L., Healy, S. B., Hersbach, H., Hòlm, E. V., Isaksen, L., Kållberg, P., Köhler, M., Matricardi, M., McNally, A. P., Monge-Sanz, B. M., Morcrette, J.-J., Park, B.-K., Peubey, C., de Rosnay, P., Tavolato, C., Thépaut, J.-N., and Vitart, F.: The ERA-Interim reanalysis: configuration and performance of the data assimilation system, Q. J. Roy. Meteor. Soc., 137, 553–597, <a href="https://doi.org/10.1002/qj.828" target="_blank">https://doi.org/10.1002/qj.828</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Dudhia(2017)</label><mixed-citation>
Dudhia, A.: The Reference Forward Model (RFM), J. Quant. Spectrosc. Ra., 186, 243–253, <a href="https://doi.org/10.1016/j.jqsrt.2016.06.018" target="_blank">https://doi.org/10.1016/j.jqsrt.2016.06.018</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>ESA(2012)</label><mixed-citation>
ESA: Report for Mission Selection: PREMIER, Europea
n Space Agency, Noordwijk,  The Netherland, SP-1324/3, 234 pp., 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Fischer et al.(2008)</label><mixed-citation>
Fischer, H., Birk, M., Blom, C., Carli, B., Carlotti, M., von Clarmann, T., Delbouille, L., Dudhia, A., Ehhalt, D., Endemann, M., Flaud, J. M., Gessner, R., Kleinert, A., Koopman, R., Langen, J., López-Puertas, M., Mosner, P., Nett, H., Oelhaf, H., Perron, G., Remedios, J., Ridolfi, M., Stiller, G., and Zander, R.: MIPAS: an instrument for atmospheric and climate research, Atmos. Chem. Phys., 8, 2151–2188, <a href="https://doi.org/10.5194/acp-8-2151-2008" target="_blank">https://doi.org/10.5194/acp-8-2151-2008</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Friedl-Vallon et al.(2014)</label><mixed-citation>
Friedl-Vallon, F., Gulde, T., Hase, F., Kleinert, A., Kulessa, T., Maucher, G., Neubert, T., Olschewski, F., Piesch, C., Preusse, P., Rongen, H., Sartorius, C., Schneider, H., Schönfeld, A., Tan, V., Bayer, N., Blank, J., Dapp, R., Ebersoldt, A., Fischer, H., Graf, F., Guggenmoser, T., Höpfner, M., Kaufmann, M., Kretschmer, E., Latzko, T., Nordmeyer, H., Oelhaf, H., Orphal, J., Riese, M., Schardt, G., Schillings, J., Sha, M. K., Suminska-Ebersoldt, O., and Ungermann, J.: Instrument concept of the imaging Fourier transform spectrometer GLORIA, Atmos. Meas. Tech., 7, 3565–3577, <a href="https://doi.org/10.5194/amt-7-3565-2014" target="_blank">https://doi.org/10.5194/amt-7-3565-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Gayet et al.(2004)</label><mixed-citation>
Gayet, J.-F., Ovarlez, J., Shcherbakov, V., Ström, J., Schumann, U., Minikin,  A., Auriol, F., Petzold, A., and Monier, M.: Cirrus cloud microphysical and  optical properties at southern and northern midlatitudes during the INCA  experiment, J. Geophys. Res., 109, D20206, <a href="https://doi.org/10.1029/2004JD004803" target="_blank">https://doi.org/10.1029/2004JD004803</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Gordley and Russell(1981)</label><mixed-citation>
Gordley, L. L. and Russell, J. M.: Rapid inversion of limb radiance data using an emissivity growth approximation, Appl. Optics, 20, 807–813,  <a href="https://doi.org/10.1364/AO.20.000807" target="_blank">https://doi.org/10.1364/AO.20.000807</a>, 1981.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Griessbach et al.(2013)</label><mixed-citation>
Griessbach, S., Hoffmann, L., Höpfner, M., Riese, M., and Spang, R.:  Scattering in infrared radiative transfer: A comparison between the  spectrally averaging model JURASSIC and the line-by-line model KOPRA, J.  Quant. Spectrosc. Ra., 127, 102–118, <a href="https://doi.org/10.1016/j.jqsrt.2013.05.004" target="_blank">https://doi.org/10.1016/j.jqsrt.2013.05.004</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Griessbach et al.(2014)</label><mixed-citation>
Griessbach, S., Hoffmann, L., Spang, R., and Riese, M.: Volcanic ash detection with infrared limb sounding: MIPAS observations and radiative transfer simulations, Atmos. Meas. Tech., 7, 1487–1507, <a href="https://doi.org/10.5194/amt-7-1487-2014" target="_blank">https://doi.org/10.5194/amt-7-1487-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Griessbach et al.(2016)</label><mixed-citation>
Griessbach, S., Hoffmann, L., Spang, R., von Hobe, M., Müller, R., and Riese, M.: Infrared limb emission measurements of aerosol in the troposphere and stratosphere, Atmos. Meas. Tech., 9, 4399–4423, <a href="https://doi.org/10.5194/amt-9-4399-2016" target="_blank">https://doi.org/10.5194/amt-9-4399-2016</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Griessbach et al.(2020a)</label><mixed-citation>
Griessbach, S., Hoffmann, L., Spang, R., Achtert, P., von Hobe, M., Mateshvili, N., Müller, R., Riese, M., Rolf, C., Seifert, P., and Vernier, J.-P.: Aerosol and cloud top height information of Envisat MIPAS measurements, Atmos. Meas. Tech., 13, 1243–1271, <a href="https://doi.org/10.5194/amt-13-1243-2020" target="_blank">https://doi.org/10.5194/amt-13-1243-2020</a>, 2020a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Griessbach et al.(2020b)</label><mixed-citation>
Griessbach, S., Dinelli, B. M., Höpfner, M., Hoffmann, L., Kahnert, M., Krämer, M., Maestri, T., Siddans, R., Spang, R., and Ungermann, J.: Aerosol and cloud detection capabilities of infrared  limb emission measurements, Atmos. Meas. Tech., in preparation, 2020b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>Hase and Höpfner(1999)</label><mixed-citation>
Hase, F. and Höpfner, M.: Atmospheric ray path modeling for radiative  transfer algorithms, Appl. Optics, 38, 3129–3133,  <a href="https://doi.org/10.1364/AO.38.003129" target="_blank">https://doi.org/10.1364/AO.38.003129</a>, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Heymsfield et al.(2017)</label><mixed-citation>
Heymsfield, A. J., Krämer, M., Luebke, A., Brown, P., Cziczo, D. J.,  Franklin, C., Lawson, P., Lohmann, U., McFarquhar, G., Ulanowski, Z., and  Van Tricht, K.: Cirrus Clouds, Meteor. Mon., 58, 2.1–2.26,  <a href="https://doi.org/10.1175/AMSMONOGRAPHS-D-16-0010.1" target="_blank">https://doi.org/10.1175/AMSMONOGRAPHS-D-16-0010.1</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Hoffmann(2006)</label><mixed-citation>
Hoffmann, L.: Schnelle Spurengasretrieval für das Satellitenexperiment  Envisat MIPAS, Forschungszentrum Jülich, Jülich, Germany, Tech. Rep. JUEL-4207, ISSN&thinsp;0944-2952, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Höpfner et al.(2019)</label><mixed-citation>
Höpfner, M., Ungermann, J., Borrmann, S., Wagner, R., Spang, R., Riese, M., Stiller, G., Appel, O., Batenburg, A. M., Bucci, S., Cairo, F., Dragoneas, A., Friedl-Vallon, F., Hünig, A., Johansson, S., Krasauskas, L., Legras, B., Leisner, T., Mahnke, C., Möhler, O., Molleker, S., Müller, R., Neubert, T., Orphal, J., Preusse, P., Rex, M., Saathoff, H., Stroh, F., Weigel, R., and Wohltmann, I.: Ammonium nitrate particles formed in upper troposphere from ground ammonia sources during Asian monsoons, Nat.  Geosci., 12, 1752–0908, <a href="https://doi.org/10.1038/s41561-019-0385-8" target="_blank">https://doi.org/10.1038/s41561-019-0385-8</a>, 2019.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>IPCC(2007)</label><mixed-citation>
IPCC: Climate Change 2007: The Physical Science Basis. Contributions of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Jülich Supercomputing Centre(2018)</label><mixed-citation>
Jülich Supercomputing Centre: JURECA: Modular supercomputer at  Jülich Supercomputing Centre, Journal of large-scale research  facilities, 4, A132, <a href="https://doi.org/10.17815/jlsrf-4-121-1" target="_blank">https://doi.org/10.17815/jlsrf-4-121-1</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Kalicinsky et al.(2013)</label><mixed-citation>
Kalicinsky, C., Grooß, J.-U., Günther, G., Ungermann, J., Blank, J., Höfer, S., Hoffmann, L., Knieling, P., Olschewski, F., Spang, R., Stroh, F., and Riese, M.: Observations of filamentary structures near the vortex edge in the Arctic winter lower stratosphere, Atmos. Chem. Phys., 13, 10859–10871, <a href="https://doi.org/10.5194/acp-13-10859-2013" target="_blank">https://doi.org/10.5194/acp-13-10859-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Kent et al.(1997)</label><mixed-citation>
Kent, G. S., Winker, D. M., Vaughan, M. A., Wang, P.-H., and Skeens, K. M.:  Simulation of Stratospheric Aerosol and Gas Experiment (SAGE) II cloud  measurements using airborne lidar data, J. Geophys. Res., 102,  21795–21807, <a href="https://doi.org/10.1029/97JD01390" target="_blank">https://doi.org/10.1029/97JD01390</a>, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Kleinert et al.(2014)</label><mixed-citation>
Kleinert, A., Friedl-Vallon, F., Guggenmoser, T., Höpfner, M., Neubert, T., Ribalda, R., Sha, M. K., Ungermann, J., Blank, J., Ebersoldt, A., Kretschmer, E., Latzko, T., Oelhaf, H., Olschewski, F., and Preusse, P.: Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra, Atmos. Meas. Tech., 7, 4167–4184, <a href="https://doi.org/10.5194/amt-7-4167-2014" target="_blank">https://doi.org/10.5194/amt-7-4167-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Konopka et al.(2007)</label><mixed-citation>
Konopka, P., Günther, G., Müller, R., dos Santos, F. H. S., Schiller, C., Ravegnani, F., Ulanovsky, A., Schlager, H., Volk, C. M., Viciani, S., Pan, L. L., McKenna, D.-S., and Riese, M.: Contribution of mixing to upward transport across the tropical tropopause layer (TTL), Atmos. Chem. Phys., 7, 3285–3308, <a href="https://doi.org/10.5194/acp-7-3285-2007" target="_blank">https://doi.org/10.5194/acp-7-3285-2007</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Kox et al.(2014)</label><mixed-citation>
Kox, S., Bugliaro, L., and Ostler, A.: Retrieval of cirrus cloud optical thickness and top altitude from geostationary remote sensing, Atmos. Meas. Tech., 7, 3233–3246, <a href="https://doi.org/10.5194/amt-7-3233-2014" target="_blank">https://doi.org/10.5194/amt-7-3233-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Krämer et al.(2020)</label><mixed-citation>
Krämer, M., Rolf, C., Spelten, N., Afchine, A., Fahey, D., Jensen, E., Khaykin, S., Kuhn, T., Lawson, P., Lykov, A., Pan, L. L., Riese, M., Rollins, A., Stroh, F., Thornberry, T., Wolf, V., Woods, S., Spichtinger, P., Quaas, J., and Sourdeval, O.: A microphysics guide to cirrus – Part 2: Climatologies of clouds and humidity from observations, Atmos. Chem. Phys., 20, 12569–12608, <a href="https://doi.org/10.5194/acp-20-12569-2020" target="_blank">https://doi.org/10.5194/acp-20-12569-2020</a>, 2020.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Krisch et al.(2017)</label><mixed-citation>
Krisch, I., Preusse, P., Ungermann, J., Dörnbrack, A., Eckermann, S. D., Ern, M., Friedl-Vallon, F., Kaufmann, M., Oelhaf, H., Rapp, M., Strube, C., and Riese, M.: First tomographic observations of gravity waves by the infrared limb imager GLORIA, Atmos. Chem. Phys., 17, 14937–14953, <a href="https://doi.org/10.5194/acp-17-14937-2017" target="_blank">https://doi.org/10.5194/acp-17-14937-2017</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Krisch et al.(2018)</label><mixed-citation>
Krisch, I., Ungermann, J., Preusse, P., Kretschmer, E., and Riese, M.: Limited angle tomography of mesoscale gravity waves by the infrared limb-sounder GLORIA, Atmos. Meas. Tech., 11, 4327–4344, <a href="https://doi.org/10.5194/amt-11-4327-2018" target="_blank">https://doi.org/10.5194/amt-11-4327-2018</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Levenberg(1944)</label><mixed-citation>
Levenberg, K.: A method for the solution of certain nonlinear problems in least squares, Q. Appl. Math., 2, 164–168, 1944.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Livesey et al.(2006)</label><mixed-citation>
Livesey, N., Van Snyder, W., Read, W., and Wagner, P.: Retrieval algorithms for the EOS Microwave limb sounder (MLS), IEEE T. Geosci. Remote., 44,
1144–1155, <a href="https://doi.org/10.1109/TGRS.2006.872327" target="_blank">https://doi.org/10.1109/TGRS.2006.872327</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Livesey and Read(2000)</label><mixed-citation>
Livesey, N. J. and Read, W. G.: Direct Retrieval of Line-of-Sight Atmospheric
Structure from Limb Sounding Observations, Geophys. Res. Lett., 27, 891–894,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Luebke et al.(2016)</label><mixed-citation>
Luebke, A. E., Afchine, A., Costa, A., Grooß, J.-U., Meyer, J., Rolf, C., Spelten, N., Avallone, L. M., Baumgardner, D., and Krämer, M.: The origin of midlatitude ice clouds and the resulting influence on their microphysical properties, Atmos. Chem. Phys., 16, 5793–5809, <a href="https://doi.org/10.5194/acp-16-5793-2016" target="_blank">https://doi.org/10.5194/acp-16-5793-2016</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>McKenna et al.(2002)</label><mixed-citation>
McKenna, D. S., Konopka, P., Grooß, J.-U., Günther, G., Müller, R., Spang, R., Offermann, D., and Orsolini, Y.: A new Chemical Lagrangian Model of the Stratosphere (CLaMS) 1. Formulation of advection and mixing, J.  Geophys. Res., 107, ACH 15-1–ACH 15-15, <a href="https://doi.org/10.1029/2000JD000114" target="_blank">https://doi.org/10.1029/2000JD000114</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Mejia et al.(2018)</label><mixed-citation>
Mejia, F. A., Kurtz, B., Levis, A., Íñigo de la Parra, and Kleissl, J.: Cloud  tomography applied to sky images: A virtual testbed, Sol. Energy, 176, 287–300, <a href="https://doi.org/10.1016/j.solener.2018.10.023" target="_blank">https://doi.org/10.1016/j.solener.2018.10.023</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Nazaryan et al.(2008)</label><mixed-citation>
Nazaryan, H., McCormick, M. P., and Menzel, W. P.: Global characterization of  cirrus clouds using CALIPSO data, J. Geophys. Res., 113, D16211,  <a href="https://doi.org/10.1029/2007JD009481" target="_blank">https://doi.org/10.1029/2007JD009481</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Norton and Beer(1977)</label><mixed-citation>
Norton, R. H. and Beer, R.: Errata: New Apodizing Functions For Fourier Spectrometry, J. Opt. Soc. Am., 67, 419–419, 1977.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Platnick et al.(2015)</label><mixed-citation>
Platnick, S., Ackerman, S., King, M. D., Meyer, K., Menzel, W. P., Holz, R. E. Baum, B. A., and Yang, P.: MODIS Atmosphere L2 Cloud Product (06_L2), NASA MODIS Adaptive Processing System, Goddard Space Flight Center, USA, <a href="https://doi.org/10.5067/MODIS/MOD06_L2.061" target="_blank">https://doi.org/10.5067/MODIS/MOD06_L2.061</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Platnick et al.(2017)</label><mixed-citation>
Platnick, S., Meyer, K. G., King, M. D., Wind, G., Amarasinghe, N.,  Marchant, B., Arnold, G. T., Zhang, Z., Hubanks, P. A., Holz,  R. E., Yang, P., Ridgway, W. L., and Riedi, J.: The MODIS Cloud  Optical and Microphysical Products: Collection 6 Updates and Examples From  Terra and Aqua, IEEE T. Geosci. Remote., 55, 502–525, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Ploeger et al.(2010)</label><mixed-citation>
Ploeger, F., Konopka, P., Günther, G., Grooß, J.-U., and Müller,  R.: Impact of the vertical velocity scheme on modeling transport in the  tropical tropopause layer, J. Geophys. Res., 115, D03301,  <a href="https://doi.org/10.1029/2009JD012023" target="_blank">https://doi.org/10.1029/2009JD012023</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Remedios et al.(2007)</label><mixed-citation>
Remedios, J. J., Leigh, R. J., Waterfall, A. M., Moore, D. P., Sembhi, H., Parkes, I., Greenhough, J., Chipperfield, M. P., and Hauglustaine, D.: MIPAS reference atmospheres and comparisons to V4.61/V4.62 MIPAS level 2 geophysical data sets, Atmos. Chem. Phys. Discuss., 7, 9973–10017, <a href="https://doi.org/10.5194/acpd-7-9973-2007" target="_blank">https://doi.org/10.5194/acpd-7-9973-2007</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Riese et al.(2014)</label><mixed-citation>
Riese, M., Oelhaf, H., Preusse, P., Blank, J., Ern, M., Friedl-Vallon, F., Fischer, H., Guggenmoser, T., Höpfner, M., Hoor, P., Kaufmann, M., Orphal, J., Plöger, F., Spang, R., Suminska-Ebersoldt, O., Ungermann, J., Vogel, B., and Woiwode, W.: Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) scientific objectives, Atmos. Meas. Tech., 7, 1915–1928, <a href="https://doi.org/10.5194/amt-7-1915-2014" target="_blank">https://doi.org/10.5194/amt-7-1915-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Schmetz et al.(2002)</label><mixed-citation>
Schmetz, J., Pili, P., Tjemkes, S., Just, D., Kerkmann, J., Rota, S., and  Ratier, A.: AN INTRODUCTION TO METEOSAT SECOND GENERATION (MSG), B. Am. Meteorol. Soc., 83, 977–992,   <a href="https://doi.org/10.1175/1520-0477(2002)083&lt;0977:AITMSG&gt;2.3.CO;2" target="_blank">https://doi.org/10.1175/1520-0477(2002)083&lt;0977:AITMSG&gt;2.3.CO;2</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Sembhi et al.(2012)</label><mixed-citation>
Sembhi, H., Remedios, J., Trent, T., Moore, D. P., Spang, R., Massie, S., and Vernier, J.-P.: MIPAS detection of cloud and aerosol particle occurrence in the UTLS with comparison to HIRDLS and CALIOP, Atmos. Meas. Tech., 5, 2537–2553, <a href="https://doi.org/10.5194/amt-5-2537-2012" target="_blank">https://doi.org/10.5194/amt-5-2537-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Spang et al.(2001a)</label><mixed-citation>
Spang, R., Riese, M., Eidmann, G., Offermann, D., and Wang, P. H.: A Detection Method for Cirrus Clouds Using CRISTA 1 and 2 Measurements, Adv. Space Res., 27, 1629–1634, 2001a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Spang et al.(2001b)</label><mixed-citation>
Spang, R., Riese, M., and Offermann, D.: CRISTA-2 observations of the south  polar vortex in winter 1997: A new dataset for polar process studies,  Geophys. Res. Lett., 28, 3159–3162, 2001b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Spang et al.(2008)</label><mixed-citation>
Spang, R., Hoffmann, L., Kullmann, A., Olschewski, F., Preusse, P., Knieling,  P., Schroeder, S., Stroh, F., Weigel, K., and Riese, M.: High resolution limb  observations of clouds by the CRISTA-NF experiment during the SCOUT-O3  tropical aircraft campaign, Adv. Space Res., 42, 1765–1775,  <a href="https://doi.org/10.1016/j.asr.2007.09.036" target="_blank">https://doi.org/10.1016/j.asr.2007.09.036</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Spang et al.(2012)</label><mixed-citation>
Spang, R., Arndt, K., Dudhia, A., Höpfner, M., Hoffmann, L., Hurley, J., Grainger, R. G., Griessbach, S., Poulsen, C., Remedios, J. J., Riese, M., Sembhi, H., Siddans, R., Waterfall, A., and Zehner, C.: Fast cloud parameter retrievals of MIPAS/Envisat, Atmos. Chem. Phys., 12, 7135–7164, <a href="https://doi.org/10.5194/acp-12-7135-2012" target="_blank">https://doi.org/10.5194/acp-12-7135-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>Spang et al.(2015)</label><mixed-citation>
Spang, R., Günther, G., Riese, M., Hoffmann, L., Müller, R., and Griessbach, S.: Satellite observations of cirrus clouds in the Northern Hemisphere lowermost stratosphere, Atmos. Chem. Phys., 15, 927–950, <a href="https://doi.org/10.5194/acp-15-927-2015" target="_blank">https://doi.org/10.5194/acp-15-927-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Spichtinger and Gierens(2009)</label><mixed-citation>
Spichtinger, P. and Gierens, K. M.: Modelling of cirrus clouds – Part 1a: Model description and validation, Atmos. Chem. Phys., 9, 685–706, <a href="https://doi.org/10.5194/acp-9-685-2009" target="_blank">https://doi.org/10.5194/acp-9-685-2009</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Steck et al.(2005)</label><mixed-citation>
Steck, T., Höpfner, M., von Clarmann, T., and Grabowski, U.: Tomographic  retrieval of atmospheric parameters from infrared limb emission observations, Appl. Optics, 44, 3291–3301, <a href="https://doi.org/10.1364/AO.44.003291" target="_blank">https://doi.org/10.1364/AO.44.003291</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Tikhonov and Arsenin(1977)</label><mixed-citation>
Tikhonov, A. N. and Arsenin, V. Y.: Solutions of ill-posed problems, Winston,  Washington D.C., USA, 1977.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Ungermann et al.(2010)</label><mixed-citation>
Ungermann, J., Hoffmann, L., Preusse, P., Kaufmann, M., and Riese, M.: Tomographic retrieval approach for mesoscale gravity wave observations by the PREMIER Infrared Limb-Sounder, Atmos. Meas. Tech., 3, 339–354, <a href="https://doi.org/10.5194/amt-3-339-2010" target="_blank">https://doi.org/10.5194/amt-3-339-2010</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Ungermann et al.(2011)</label><mixed-citation>
Ungermann, J., Blank, J., Lotz, J., Leppkes, K., Hoffmann, L., Guggenmoser, T., Kaufmann, M., Preusse, P., Naumann, U., and Riese, M.: A 3-D tomographic retrieval approach with advection compensation for the air-borne limb-imager GLORIA, Atmos. Meas. Tech., 4, 2509–2529, <a href="https://doi.org/10.5194/amt-4-2509-2011" target="_blank">https://doi.org/10.5194/amt-4-2509-2011</a>, 2011.

</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Ungermann et al.(2015)</label><mixed-citation>
Ungermann, J., Blank, J., Dick, M., Ebersoldt, A., Friedl-Vallon, F., Giez, A., Guggenmoser, T., Höpfner, M., Jurkat, T., Kaufmann, M., Kaufmann, S., Kleinert, A., Krämer, M., Latzko, T., Oelhaf, H., Olchewski, F., Preusse, P., Rolf, C., Schillings, J., Suminska-Ebersoldt, O., Tan, V., Thomas, N., Voigt, C., Zahn, A., Zöger, M., and Riese, M.: Level 2 processing for the imaging Fourier transform spectrometer GLORIA: derivation and validation of temperature and trace gas volume mixing ratios from calibrated dynamics mode spectra, Atmos. Meas. Tech., 8, 2473–2489, <a href="https://doi.org/10.5194/amt-8-2473-2015" target="_blank">https://doi.org/10.5194/amt-8-2473-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>von Clarmann et al.(2003)</label><mixed-citation>
von Clarmann, T., Glatthor, N., Grabowski, U., Höpfner, M., Kellmann, S.,  Kiefer, M., Linden, A., Tsidu, G. M., Milz, M., Steck, T., Stiller, G. P.,   Wang, D. Y., and Fischer, H.: Retrieval of temperature and tangent altitude   pointing from limb emission spectra recorded from space by the Michelson   Interferometer for Passive Atmospheric Sounding (MIPAS), J.  Geophys. Res., 108, 4736, <a href="https://doi.org/10.1029/2003JD003602" target="_blank">https://doi.org/10.1029/2003JD003602</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>von Clarmann et al.(2009)</label><mixed-citation>
von Clarmann, T., De Clercq, C., Ridolfi, M., Höpfner, M., and Lambert, J.-C.: The horizontal resolution of MIPAS, Atmos. Meas. Tech., 2, 47–54, <a href="https://doi.org/10.5194/amt-2-47-2009" target="_blank">https://doi.org/10.5194/amt-2-47-2009</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Weinreb and Neuendorffer(1973)</label><mixed-citation>
Weinreb, M. P. and Neuendorffer, A. C.: Method to Apply Homogeneous-path  Transmittance Models to Inhomogeneous Atmospheres, J. Atmos. Sci., 30,  662–666, <a href="https://doi.org/10.1175/1520-0469(1973)030&lt;0662:MTAHPT&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0469(1973)030&lt;0662:MTAHPT&gt;2.0.CO;2</a>, 1973.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Weisz et al.(2007)</label><mixed-citation>
Weisz, E., Li, J., Menzel, W. P., Heidinger, A. K., Kahn, B. H., and Liu,  C.-Y.: Comparison of AIRS, MODIS, CloudSat and CALIPSO cloud top  height retrievals, Geophys. Res. Lett., 34, L17811, <a href="https://doi.org/10.1029/2007GL030676" target="_blank">https://doi.org/10.1029/2007GL030676</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Winker et al.(2007)</label><mixed-citation>
Winker, D. M., Hunt, W. H., and McGill, M. J.: Initial performance assessment  of CALIOP, Geophys. Res. Lett., 34, L19803, <a href="https://doi.org/10.1029/2007GL030135" target="_blank">https://doi.org/10.1029/2007GL030135</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>Winker et al.(2009)</label><mixed-citation>
Winker, D. M., Vaughan, M. A., Omar, A., Hu, Y., Powell, K. A., Liu, Z., Hunt, W. H., and Young, S. A.: Overview of the CALIPSO Mission and CALIOP Data Processing Algorithms, J. Atmos. Ocean. Tech., 26, 2310–2323, <a href="https://doi.org/10.1175/2009JTECHA1281.1" target="_blank">https://doi.org/10.1175/2009JTECHA1281.1</a>, 2009.
</mixed-citation></ref-html>--></article>
