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  <front>
    <journal-meta><journal-id journal-id-type="publisher">AMT</journal-id><journal-title-group>
    <journal-title>Atmospheric Measurement Techniques</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1867-8548</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-17-3553-2024</article-id><title-group><article-title>In-flight characterization of a compact airborne quantum cascade laser absorption spectrometer</article-title><alt-title>In-flight characterization of a compact airborne QLAS​​​​​​​</alt-title>
      </title-group><?xmltex \runningtitle{In-flight characterization of a compact airborne QLAS​​​​​​​}?><?xmltex \runningauthor{L. Ort et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Ort</surname><given-names>Linda</given-names></name>
          <email>linda.ort@mpic.de</email>
        <ext-link>https://orcid.org/0009-0004-8883-5201</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Röder</surname><given-names>Lenard Lukas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1551-009X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Parchatka</surname><given-names>Uwe</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Königstedt</surname><given-names>Rainer</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Crowley</surname><given-names>Daniel</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Kunz</surname><given-names>Frank</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Wittkowski</surname><given-names>Ralf</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff4">
          <name><surname>Lelieveld</surname><given-names>Jos</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6307-3846</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Fischer</surname><given-names>Horst</given-names></name>
          <email>horst.fischer@mpic.de</email>
        </contrib>
        <aff id="aff1"><label>1</label><institution>Atmospheric Chemistry Department, Max Planck Institute for Chemistry, 55128 Mainz, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Dynamics at Surfaces, Max Planck Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Mechanical Support Department, Max Planck Institute for Chemistry, 55128 Mainz, Germany</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Climate and Atmosphere Research Center, The Cyprus Institute, Nicosia, 1645, Cyprus</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Linda Ort (linda.ort@mpic.de) and Horst Fischer (horst.fischer@mpic.de)</corresp></author-notes><pub-date><day>11</day><month>June</month><year>2024</year></pub-date>
      
      <volume>17</volume>
      <issue>11</issue>
      <fpage>3553</fpage><lpage>3565</lpage>
      <history>
        <date date-type="received"><day>29</day><month>November</month><year>2023</year></date>
           <date date-type="rev-request"><day>30</day><month>November</month><year>2023</year></date>
           <date date-type="rev-recd"><day>26</day><month>April</month><year>2024</year></date>
           <date date-type="accepted"><day>29</day><month>April</month><year>2024</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 Linda Ort et al.</copyright-statement>
        <copyright-year>2024</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024.html">This article is available from https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024.html</self-uri><self-uri xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e176">Here, we report on the development of a new quantum cascade laser infrared absorption spectroscopy (QLAS) instrument, the Airborne Tropospheric Tracer In-situ Laser Absorption spectrometer (ATTILA), for atmospheric trace-gas measurements on board of the German High-Altitude Long-range Observatory (HALO) aircraft. Its small and light design makes it suitable for airborne measurements up to approximately 150 hPa of ambient pressure (13–14 km). The dual laser instrument can measure several trace gases simultaneously in two 36.4 m path astigmatic Herriott cells with a data acquisition frequency of 1 Hz. We describe the measurement method and the data acquisition of ATTILA and its in-flight performance by focusing on potential sources of influences on the signal, which we investigated with a dedicated test flight during which the instrument sampled from a constant source. We show that linear critical influences associated with challenging movement patterns can be corrected afterwards, while nonlinear limitations can be minimized by appropriate calibration frequencies and integrated time intervals. During the recent aircraft campaign CAFE Brazil (Chemistry of the Atmosphere Field Experiment in Brazil) from December 2022 to January 2023, carbon monoxide (CO) measurements from ATTILA show a good agreement of a <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of 0.89 with simultaneous CO measurements from an established IR spectrometer for airborne measurements, the TRacer In Situ TDLAS (tunable diode laser absorption spectroscopy) for Atmospheric Research (TRISTAR), at a 10 s time resolution. First dynamical characteristics and tracer distributions of CO and methane (CH<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>) over the Amazon rainforest can be identified with ATTILA measurements with a total measurement uncertainty of 10.1 % and 17.5 % for calibration gas mixing ratios of 153 and 1990 ppbv and a data accuracy of 0.3 % and 5.5 % for a data acquisition frequency of 1 Hz for CO and CH<inline-formula><mml:math id="M3" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, respectively.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e217">Laser spectroscopic measurement techniques have been developed considerably in the past 2 decades, improving their resolution, accuracy,  and stability for trace-gas measurements in the atmosphere <xref ref-type="bibr" rid="bib1.bibx32" id="paren.1"/>. These advantages, and many more, make laser spectroscopy a highly efficient technique for measuring trace gases compared to classic chemical and chromatographic measurement techniques <xref ref-type="bibr" rid="bib1.bibx15" id="paren.2"/>. Tunable diode laser absorption spectroscopy (TDLAS) and the more efficient quantum cascade laser infrared absorption spectroscopy (QLAS) have been proven to be reliable measurement techniques in numerous publications (<xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx12 bib1.bibx5 bib1.bibx17 bib1.bibx31 bib1.bibx20" id="altparen.3"/>,  and citations within). Especially for airborne measurements, a lightweight and compact design that can withstand the extremely difficult measurement conditions caused by abrupt changes in acceleration, direction,  and height is very important <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx2" id="paren.4"/>. Through the work of <xref ref-type="bibr" rid="bib1.bibx25" id="text.5"/> we also know that on airborne-platform instrumental characteristics<?pagebreak page3554?> can behave differently compared to the laboratory. QLAS and TDLAS trace-gas measurements have been proven to be very valuable for detecting and understanding small-scale atmospheric chemistry, radiative effects, transport processes,  and their overall impact on the Earth's climate <xref ref-type="bibr" rid="bib1.bibx6" id="paren.6"/>. A reliable spectrometer for airborne measurements is the TRacer In Situ TDLAS for Atmospheric Research (TRISTAR), which performed successfully in a large number of field campaigns and research flights measuring tropospheric and stratospheric carbon monoxide (CO), carbon dioxide (CO<inline-formula><mml:math id="M4" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>), methane (CH<inline-formula><mml:math id="M5" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>), nitrous oxide (N<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O),  and formaldehyde (HCHO) <xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx26 bib1.bibx27 bib1.bibx29" id="paren.7"/>. Since the work of <xref ref-type="bibr" rid="bib1.bibx29" id="text.8"/>, TRISTAR has been further improved,  which is described in the study of <xref ref-type="bibr" rid="bib1.bibx25" id="text.9"/>.</p>
      <p id="d1e276">Airborne measurements can generate high-resolution and small-scale data even in remote locations, for example, in the tropics, where high cloud coverage complicates satellite-based measurements (<xref ref-type="bibr" rid="bib1.bibx22" id="altparen.10"/>,  and citations within). Nevertheless, besides these advantages, experimental challenges such as vibrations, weight, and size limitations, pressure and temperature fluctuations during research flights, and complicated measurement modes for operation have prompted further investigations for suitable instrumentation <xref ref-type="bibr" rid="bib1.bibx15" id="paren.11"/>.</p>
      <p id="d1e285">In the following, we present the Airborne Tropospheric Tracer In-situ Laser Absorption spectrometer, in short ATTILA, which has been specifically developed for airborne trace-gas measurements on board of the High-Altitude Long-range Observatory (HALO) aircraft. It is equipped with two room-temperature quantum cascade lasers that measure CO, CH<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, and N<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O in a two-cell system, which is described in more detail in Sect. <xref ref-type="sec" rid="Ch1.S2"/>. ATTILA conducted measurements during the CAFE Brazil (Chemistry of the Atmosphere Field Experiment in Brazil) campaign in December 2022 and January 2023, which took place above the Amazon rainforest region. In the scope of the campaign, a test flight was performed to investigate instrument behavior in the face of extreme airborne challenges in more detail. The doubling of simultaneous trace-gas measurements of the well-known TRISTAR spectrometer and the newly developed spectrometer ATTILA allows a comparison and quantification of the data quality,  as well as some first insights into the atmospheric composition and trace-gas distribution over the Amazon rainforest.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>The ATTILA instrument</title>
      <p id="d1e316">ATTILA is a custom-built two-cell mid-infrared room-temperature quantum cascade laser absorption spectrometer constructed in 2019 at the Max Planck Institute for Chemistry to measure trace gases in the atmosphere on board of the research aircraft HALO. It is designed to further improve airborne measurements considering the limitations of weight and size for small aircraft. ATTILA is mounted in a 19 in. (48.26 cm) box and is small in size (48 cm <inline-formula><mml:math id="M9" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 27 cm <inline-formula><mml:math id="M10" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 55 cm) with a total weight of only 20.6 kg (excluding the pump). It holds two optical frames mounted in parallel inside of it. Figure <xref ref-type="fig" rid="Ch1.F1"/> shows a picture of the instrument setup inside the box. The instrument is layered into two sections. On the top layer, the two optical frames, the flow systems,  and the tubing are mounted. In the bottom layer the electronic devices are located. Those two layers are separated by a 4.5 mm thick aluminum plate and are ventilated by four fans located on the front of the instrument, which is in the picture on the right-hand side.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e337">Picture of the top view of the measurement setup of ATTILA with the front of the instrument directed towards the right side. In the upper part of the picture the optical unit measuring CH<inline-formula><mml:math id="M11" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> and N<inline-formula><mml:math id="M12" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O with the laser HHL-446 is located,  and in the lower part, CO and N<inline-formula><mml:math id="M13" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O can be measured with the HHL-442 laser.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f01.jpg"/>

      </fig>

      <p id="d1e373">In the following the individual parts of the ATTILA instrument are described in more detail.</p>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Optical and electrical setup</title>
      <?pagebreak page3555?><p id="d1e384">Figure <xref ref-type="fig" rid="Ch1.F2"/> shows an overview of the schematic setup of the IR spectrometer. The two optical frames each consist of an astigmatic Herriott cell (HC; <xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx16" id="altparen.12"/>), a quantum cascade laser (QCL),  and a mid-infrared detector, as well as mirrors and lenses directing the laser beam in the optical section. Multipass absorption cells are often used to provide long optical pathways in an optimized compact volume <xref ref-type="bibr" rid="bib1.bibx35" id="paren.13"/>. The total airflow of 0.2 L min<inline-formula><mml:math id="M14" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is controlled by two compound mass flow controllers (MFCs) (Bronkhorst, IQ+FLOW) separating the gas flow into the two cells with 0.1 L min<inline-formula><mml:math id="M15" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> each. Furthermore, for calibration measurements another MFC leads 0.3 L min<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> of an external gas bottle into the ambient tube, where 0.2 L min<inline-formula><mml:math id="M17" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is separated into the two HCs again and 0.1 L min<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> prevents ambient air influence.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e458">Schema of the measurement setup of ATTILA with the electrical and optical components.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f02.png"/>

        </fig>

      <p id="d1e467">The two QCLs (Alpes Lasers, HHL-series, Lausanne, Switzerland) can measure CO (2190.0175 cm<inline-formula><mml:math id="M19" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; <xref ref-type="bibr" rid="bib1.bibx14" id="altparen.14"/>) and N<inline-formula><mml:math id="M20" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O (2190.3498 cm<inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; <xref ref-type="bibr" rid="bib1.bibx30" id="altparen.15"/>) in one cell <xref ref-type="bibr" rid="bib1.bibx15" id="paren.16"/> and CH<inline-formula><mml:math id="M22" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> (1256.6 cm<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; <xref ref-type="bibr" rid="bib1.bibx1" id="altparen.17"/>) and N<inline-formula><mml:math id="M24" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O (1255.42 cm<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; <xref ref-type="bibr" rid="bib1.bibx30" id="altparen.18"/>) in the second cell. The N<inline-formula><mml:math id="M26" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O lines are mainly used to track the line center position of the spectra throughout atmospheric measurements due to its long lifetimes in the troposphere with only a small vertical gradient <xref ref-type="bibr" rid="bib1.bibx3" id="paren.19"/>. Both lasers are functional for laser temperatures up to 60 °C but are cooled down to 26.5 °C for operation. Each laser is controlled by a laser controller (Wavelength Electronics, WTC3243 and  WTC3293), which adjusts the current and temperature of the laser. An integrated Peltier junction and an NTC temperature sensor (model 10K4CG) together with the above-mentioned fans ensure temperature stability. As the two optical frames are identical in their setup, the following description will focus only on one frame, as shown schematically in Fig. <xref ref-type="fig" rid="Ch1.F3"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e579">Sketch of the full optical setup for one cell including the astigmatic Herriott cell, the laser,  and detector as well as the directing mirrors.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f03.png"/>

        </fig>

      <p id="d1e588">First, the laser beam passes two anti-reflection-coated plano-convex lenses to compensate for the divergence and focus it onto an adjustable plane mirror with an elliptical shape (Thorlabs, 12.7 mm (PFE05-P01)), which projects the laser beam on a right-angle prism mirror (Thorlabs, 12.5 mm (MRA12-P01)). Here, the laser beam is guided through an entrance window (Edmund Optics, TECHSPEC CaF<inline-formula><mml:math id="M27" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> 20 mm) and a coupling hole of the front mirror onto the left side of the back mirror of the two opposing astigmatic mirrors (Aerodyne, AMAC-36) of the HC. The correct adjustment of the HC is done with an optical visible adjustment laser at 635 nm (Thorlabs, HLS635) to see and achieve the specifically needed Lissajous pattern <xref ref-type="bibr" rid="bib1.bibx35" id="paren.20"/> on the two mirrors. This pattern is formed by the different horizontal and vertical radii of the curvature of <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M29" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 246.0 mm and <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M31" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 269.4 mm, respectively, of the two concave mirrors with diameters of 3.8 cm. They need to be rotated exactly by 62.55° to each other, considering their orientation, with the focus of the first entering beam in the middle of the cell. This alignment results in a multipass state where the laser beam is reflected 182 times back and forth which covers a distance of 36.4 m inside the compact HC with a length of 199.91 mm. With increasing path length, the signal-to-noise ratio (SNR) increases until the loss of the many reflections becomes important <xref ref-type="bibr" rid="bib1.bibx33" id="paren.21"/>. With a volume of 250 mL, the astigmatic HC provides an effective SNR compared to other HC types <xref ref-type="bibr" rid="bib1.bibx35" id="paren.22"/>. Furthermore, between 3 to 10 <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m the mirrors for the CO–N<inline-formula><mml:math id="M33" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O cell are coated with silver, which provides a reflectivity of 99.2 % with a minimum of 99 % (Tafelmaier, Dünnschicht-Technik GmbH, Germany). For the same range but with a golden coating, the mirrors of the CH<inline-formula><mml:math id="M34" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>–N<inline-formula><mml:math id="M35" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O cell have a reflectivity of around 99 % (Tafelmaier, Dünnschicht-Technik GmbH, Germany). One potential limitation of the HC can be optical interference fringes produced by scattering in the cell which degrade the effective SNR and can disturb the molecular absorption lines through a similar free spectral range. More features of the HC can be found in <xref ref-type="bibr" rid="bib1.bibx16" id="text.23"/> and <xref ref-type="bibr" rid="bib1.bibx35" id="text.24"/>.</p>
      <p id="d1e688">When the laser beam passes the HC,  it gets partly absorbed by the trace gas of interest until it exits the cell through the entrance hole again. Through two valves above the back mirror side of the HC the sampled air inside the cell can be exchanged. The input valve which is controlled by the above-mentioned MFCs brings either ambient or calibration gas into the cell on the front mirror side. Behind the output valve a pump (VACUUBRAND, diaphragm pump – MD 1 VARIO-SP) is attached to reduce and keep the pressure inside the cells at 50 hPa continuously, which is detected by a pressure sensor (Dekont, VCC200) connected to the input valve. Furthermore, a PT-100 temperature sensor is mounted on top of the HC, detecting the temperature of the cell.</p>
      <p id="d1e691">After exiting the HC through the front mirror hole the laser beam is directed with a prism and an adjustable elliptical mirror through a single lens and focused onto a room-temperature infrared-sensitive photovoltaic semiconductor detector (VIGO System S.A., PIP-DC-20M-F-M4). The beam slightly overshoots the detector entrance to compensate for potential beam misalignment due to vibrations.</p>
      <p id="d1e694">For improved stability of the signal during vibrations and movements the optical frame is equipped with bracket reinforcements. Furthermore, several black isolating covers on top of the laser pathways reduce temperature fluctuations and laser scattering.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Signal processing and analysis software</title>
      <p id="d1e705">The characteristics of the signal are processed, controlled,  and read out by a single-board controller (National Instruments, CompactRIO sbRIO-9627). The controller includes a real-time processor, a field-programmable gate array (FPGA), which modulates the frequency on top of a voltage ramp including an offset to scan the targeted spectrum range. This is done by using the wavelength modulation spectroscopy (WMS) technique, described in <xref ref-type="bibr" rid="bib1.bibx5" id="text.25"/>. The triangular ramp provides two spectra, an upwards- and downwards-directed spectrum of the measured signal. With a sine wave modulation frequency of 17.86 kHz, a ramp is generated with 4096 discrete steps and scanned within 28.7 ms in each direction. Therefore, the frequency of the triangular wave is 17.4 Hz. This provides a scanning frequency of approx. 35 000 samples per second for each tracer of interest, after which the ramp is reduced by a quarter resulting in a 1024-point spectrum. The modulation depths for CO and CH<inline-formula><mml:math id="M36" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> have been chosen empirically to maximize the signal-to-noise ratio. This digital command is converted into an analogue signal via a digital–analog converter (DAC) and transferred through an analog output to the laser controller. Then, the laser controller can adjust the temperature and current of the infrared laser to perform the wavelength scan of the signal to generate an absorption spectrum when passing the HC. After detecting the absorbed signal, a pre-amplifier forwards the amplified signal through an analog input back into the sbRIO-9627, where the signal gets digitized by an analog–digital converter (ADC) again. Here, a digital lock-in amplifier demodulates and phase shifts the signal with the doubled initial modulation frequency (2<inline-formula><mml:math id="M37" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>) to match the phase of the measured signal. Both the modulation and demodulation are performed by a LabVIEW (Laboratory Virtual Instrument Engineering Workbench)-controlled real-time FPGA system that is free of any jitter caused by software processes. The 2<inline-formula><mml:math id="M38" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> harmonic signal provides a nearly constant baseline in the absorption-free region and a maximum at the center of the line <xref ref-type="bibr" rid="bib1.bibx5" id="paren.26"/>. This ensures a minimization of electronic noise and an independency of the baseline of the spectra. Therefore, background calibrations and background subtraction are not necessary. Only a source with constant and known gas concentrations is needed to calculate the final gas mixing ratios. After the lock-in amplifier, a low-pass filter generates the DC signal with 1024 channels and an absorption spectrum which can be visualized in the corresponding software LabVIEW. The signal processing methodology and setup have a resolution time of 1 Hz with a duty cycle of 100 % for each tracer of interest, thereby facilitating the real-time visualization of precise concentrations of trace gases present in the sampled air. Additionally, a linear regression scheme calculates real concentration values, <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, with the slope of the correlation between the fit of the 2<inline-formula><mml:math id="M40" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> absorption spectrum <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the calibration spectrum <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">cal</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> multiplied by the known calibration gas concentration <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">cal</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> as follows <xref ref-type="bibr" rid="bib1.bibx5" id="paren.27"/>:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M44" display="block"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">cal</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">corr</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">s</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">cal</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          A huge advantage of the processing is the flexibility of the modulation and fitting settings. Every parameter can be digitally adjusted to achieve the best result. The current settings<?pagebreak page3557?> have been chosen after intensive laboratory test runs and have proven themselves during the campaign.</p>
      <p id="d1e833">In addition to the online signal processing, a specialized analysis software was developed using IGOR Pro (WaveMetrics) for comprehensive postprocessing of the raw spectra. The software features automated filtering, exact positioning of the absorption lines,  and background subtraction, if necessary, while also facilitating a precise linear fit to a calibration spectrum. Moreover, linear cell pressure variances as well as nonlinear Lambert–Beer effects can be corrected and overall precise mixing ratios of a species of interest can be determined. Furthermore, 1D and 2D visualization of the spectra with time can be used to recapitulate and correct for drift behavior or abrupt changes in the background induced by, e.g., temperature and pressure changes as well as the movements of the aircraft <xref ref-type="bibr" rid="bib1.bibx26" id="paren.28"/>. Further analysis and noise reduction opportunities have been discussed in <xref ref-type="bibr" rid="bib1.bibx24" id="text.29"/> and citations within.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Instrument setup on board of HALO</title>
      <p id="d1e850">ATTILA is developed for aircraft measurements, specifically on board of the research aircraft HALO. During field campaigns, it is mounted in a 19 in. (48.26 cm) measurement frame rack together with the Nitrogen Oxide Analyzer for HALO (NOAH), described by <xref ref-type="bibr" rid="bib1.bibx28" id="text.30"/> and <xref ref-type="bibr" rid="bib1.bibx18" id="text.31"/>. Both instruments sample continuously over a 6.28 m long bypass from the top of the aircraft through a forward-facing stainless steel trace-gas inlet (TGI). The Teflon-coated tubing channels the ambient air through <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> in. (1.27 cm) PFA (perfluoroalkoxy alkane) tubes until it exits the aircraft again through a second TGI. After 4.57 m of this tubing, 0.2 L min<inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is led through a 1.27 m long <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> in. (0.635 cm) tube into the ATTILA instrument, located 0.16 m before the nitrogen oxide analyzer samples 3.0 L min<inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from the bypass. Figure <xref ref-type="fig" rid="Ch1.F4"/> shows a sketch of the gas flow. As the ambient air enters the spectrometer, the air is separated into the two HCs through two MFCs as described above.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e912">Flow chart of ATTILA setup on the HALO aircraft.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f04.png"/>

        </fig>

      <p id="d1e921">For in-flight calibrations, a 2 L EMS gas bottle filled with compressed air is used. It is stored below the rack during the flight. The exact concentrations of the compressed air are characterized with a primary standardized gas bottle beforehand. During the calibration mode, one MFC leads the calibration gas with a flow of approximately 0.3 L min<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> into the other two MFCs, which separate the flow into the cells with 0.1 L min<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> each. Due to this overflow of 0.1 L min<inline-formula><mml:math id="M51" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between calibration and ambient measurements, the calibration gas steams slightly into the ambient and exhaust lines which prevents these lines from influencing the measurements. A critical orifice is built inside the connecting tube towards the exhaust so that the latter does not influence ambient measurements.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Instrument performance based on test flight</title>
      <p id="d1e970">Within the CAFE Brazil campaign from November 2022 to January 2023, 22 flights have been performed with HALO, including 2 test flights during the preparation phase at the German Aerospace Center (DLR) in Oberpfaffenhofen, Germany; 4 transit flights with a stop-over at Sal, Cabo Verde;  and 16 research flights over the Amazon rainforest based in Manaus, Brazil. The first test flight was used to investigate the in-flight behavior of ATTILA. Therefore, continuous calibration gas measurements were performed during this test flight on 22 November 2022 in the preparation phase of the CAFE Brazil campaign. This test flight was specifically planned to investigate the behavior of individual instruments in response to in-flight environmental changes like temperature and pressure, as well as extreme aircraft movements,  and has already been used for instrument characterization in the studies of <xref ref-type="bibr" rid="bib1.bibx9" id="text.32"/> and <xref ref-type="bibr" rid="bib1.bibx25" id="text.33"/>. Hence, various flight levels and  different vertical velocities and accelerations, as well as the variation in yaw, pitch,  and roll angles, have been performed. At 10:30 UTC the aircraft departed. Before, the instrument was running for approx. 2 h in the aircraft to warm up. The final approach of HALO for that test flight was at 14:23 UTC. Several instrument flight parameters are shown in Figs. <xref ref-type="fig" rid="Ch1.F5"/> and <xref ref-type="fig" rid="Ch1.F6"/> and are discussed to determine the systematic influences on the signal.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e985">The 2D spectrum of the upwards-directed ramp signal of the CO–N<inline-formula><mml:math id="M52" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O laser showing the channels versus the time of the first test flight on 22 November 2022 with the N<inline-formula><mml:math id="M53" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O absorption line in the bottom (channel 800) and the CO absorption line displayed in the top (channel 200) of the graph. The color scale is adjusted to values close to zero to show a stronger contrast of the background signal. Blue colors indicate positive values, hence absorption of the signal,  and red colors negative values of the 2<inline-formula><mml:math id="M54" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> spectrum. The yellow line shows the temperature on top of the HC during the whole flight. In grey, the cabin pressure is displayed, measured at the ATTILA rack. The HALO aircraft was in the air from 10:30–14:23 UTC.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f05.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e1021">Compilation of instrument and flight parameters over time from the test flight on 22 November 2022. Shown are the laser temperature of the CO–N<inline-formula><mml:math id="M55" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O laser (<inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">laser</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, orange line), the voltage of the pump (<inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mi mathvariant="normal">pump</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, pink line), the mean HC pressure calculated over both cells (<inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">HC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, black line), and the roll (dark red line) and pitch (light blue) angles as well as the yaw angle rate per second (light green) of the HALO aircraft during that flight. As the ocher line the pressure gradient calculated as the ratio of the ambient pressure and the cabin pressure as <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">grad</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">ambient</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">cabin</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is displayed. Note that the tracer concentrations of CO in red, N<inline-formula><mml:math id="M60" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O in blue,  and CH<inline-formula><mml:math id="M61" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> in green in the top panel of the graph are not yet corrected by pressure and Lambert–Beer. A linear calibration fit has been used from only one calibration before the flight. Throughout the whole flight ATTILA was running on calibration mode sampling only from a gas bottle with 161 <inline-formula><mml:math id="M62" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9 ppbv of CO, 358 <inline-formula><mml:math id="M63" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 22 ppbv of N<inline-formula><mml:math id="M64" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O, and  2025 <inline-formula><mml:math id="M65" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7 ppbv of CH<inline-formula><mml:math id="M66" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, including the accuracy of the bottle.</p></caption>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f06.png"/>

      </fig>

      <p id="d1e1161">Starting with Fig. <xref ref-type="fig" rid="Ch1.F5"/>, the 2D 2<inline-formula><mml:math id="M67" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> raw spectra with the absorption lines of CO and N<inline-formula><mml:math id="M68" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O are shown in blue in the channels 200 and 800, respectively, over time. Additionally, the temperature of the HC <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">HC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the cabin pressure <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">cab</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of the aircraft measured at the rack are added as yellow and grey lines, respectively. Please note that the spectrum in Fig. <xref ref-type="fig" rid="Ch1.F5"/> is already processed with a pre-filter and the absorption lines are locked and shifted according to their line maximum. The<?pagebreak page3558?> background signal has not been shifted. By focusing on the background signal between channels 300 and 700, thus between the absorption lines of CO and N<inline-formula><mml:math id="M71" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O, interference on the signal can be addressed. The long-term drift behavior of the spectra correlates well with the change in the temperature inside the HC. <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">HC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> changes during the test flight by about 6 °C peak to peak. These changes are influenced by the cabin temperature which fluctuates in the same range even with the air conditioning control system on board of the HALO aircraft. The postprocessing of the signal includes a shift in the absorption lines by locking the signal on its line maximum. With this, the drift behavior of the signal can be corrected, which can be seen in Fig. <xref ref-type="fig" rid="Ch1.F5"/>. Furthermore, temperature changes have a small impact on the laser temperature and its operating point and therefore the intensity of the signal. Looking at the laser temperature of the CO–N<inline-formula><mml:math id="M73" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O laser in Fig. <xref ref-type="fig" rid="Ch1.F6"/> in the lowermost panel, the temperature change correlates well with the one from <inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">HC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. A variation in temperature further influences the optical setup by expansion of the material to induce etalon structures through interference. These interference fringes can influence the absorption signal amplitude via nonlinear constructive and destructive interference, which are much harder to identify. Slow changes in the fringe structure, such as temperature changes mentioned above, can be approximated linearly and thus be counteracted by frequent calibrations.</p>
      <p id="d1e1252">Moreover, a change in pressure can have an influence on the signal. There are two influences known which lead to different assumptions: first a change in ambient pressure and second a change in cabin pressure. First, when the ambient pressure changes, the pumping has to adjust to the new pressure gradient to keep the flow stable. This is done by varying the voltage of the pump from approx. 4 V up to its maximum of 10 V. The pump voltage, the HC pressure,  and the pressure gradient calculated from the ratio of the ambient to the cabin pressure are shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/>. Especially for fast altitude changes during, e.g., departure or landing, these disturbances are visible in the cell pressure, spectra,  and concentration. At constant flight levels and slow altitude changes, the pump can easily regulate the cell pressure to keep it constant at 50 hPa. Cell pressure instabilities are linear and hence can be corrected in the data processing.</p>
      <p id="d1e1257">Secondly, Fig. <xref ref-type="fig" rid="Ch1.F5"/> shows that the cabin pressure of the aircraft fluctuates even in constant flight levels of about 4 hPa. This influences the spectra and hence the measured concentration by inducing sine-structured short-term fluctuations. This can be seen especially between 10:48 and 11:15 UTC. Looking at the three different flight levels between 10:48 and 12:18 UTC, the cabin pressure fluctuations do not change but their influence on the signal does,  as can be seen in the mixing ratio in Fig. <xref ref-type="fig" rid="Ch1.F6"/>. Hence, we see that pressure instability has an effect on the interference fringes. This effect is not linear and still needs to be investigated.</p>
      <p id="d1e1264">In the first half of the test flight the aircraft mostly flies straight, which can be seen from the roll and pitch angles and the yaw angle rate displayed in Fig. 6. Small aircraft movements only have minor influences on the signal. In the second half of the flight from 12:30 UTC onwards extreme aircraft movements involving abrupt changes to varying roll, pitch,  and yaw angles are carried out. These aircraft movements create disturbances in the signal through, e.g., centrifugal forces which can have an effect on the optical setup and hence the signal. The mixing ratio in Fig. <xref ref-type="fig" rid="Ch1.F6"/> shows a strong impact of aircraft movements on the signal. However, these extreme aircraft movements are, if possible, avoided during measurement flights to provide as stable conditions as possible for airborne measurements. Nevertheless, another important factor causing small instrumental movements might be atmospheric turbulence,  which is not shown here.</p>
      <p id="d1e1269">In general, influences on the signal are mostly induced by temperature and pressure changes and aircraft movements <xref ref-type="bibr" rid="bib1.bibx5" id="paren.34"/>, which create linear and nonlinear effects, as described above. As it is mostly a combination of variables that influence the signal, disentangling these effects of individual parameters is difficult. Nevertheless, temperature drift behavior, pressure effects,  and short-term disturbances can be corrected by frequent calibration measurements and averaging <xref ref-type="bibr" rid="bib1.bibx23" id="paren.35"/>. To investigate the appropriate calibration frequency, different calibration intervals have been tried out in the postprocessing of the test flight, assuming that parts of the calibration gas measurements are calibrations and others are ambient measurements. The tracer concentrations shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/> are not yet drift-corrected. Their mean values are 163 <inline-formula><mml:math id="M75" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 14, 378 <inline-formula><mml:math id="M76" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 30, and 1768 <inline-formula><mml:math id="M77" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 235 ppbv for CO, N<inline-formula><mml:math id="M78" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O,  and CH<inline-formula><mml:math id="M79" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, respectively.</p>
      <?pagebreak page3559?><p id="d1e1320">For the optimal drift correction different calibration intervals have been tried out in the postprocessing of the test flight data. The drift-corrected mixing ratios for different calibration intervals for CO, N<inline-formula><mml:math id="M80" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O, and CH<inline-formula><mml:math id="M81" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> can be found in the Supplement in Figs. S1, S2,  and S3, respectively. The higher the interval, the better drift influences can be corrected, but fewer ambient measurements are done and more calibration gas is needed. The drift correction clearly depends on the positioning of the calibrations and the interference at that time. A measure for this is the reproducibility <inline-formula><mml:math id="M82" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>. For this, a mean value of each calibration measurement is calculated and investigated for their accuracy and shift over time. Low <inline-formula><mml:math id="M83" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> indicates similar mean values of each calibration and hence small drift behavior. <inline-formula><mml:math id="M84" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> varied from 0.71 % to 8.54 % for different calibration frequency scenarios from every 85 min to every 2 min. After drift correction, the relative statistical error of the calibrations provides the mean precision <inline-formula><mml:math id="M85" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>,  which is 2.63 <inline-formula><mml:math id="M86" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.47 % for all scenarios. For the choice of the appropriate calibration interval those different scenarios have been compared and an automated interval of 20 min was chosen as an optimal trade-off between drift counteraction, duty cycle,  and calibration gas consumption. The duration of the calibrations are 60 s, where the first 15 s are not taken into account in the analysis to ensure sufficient flushing time of the cell. With 20 min of calibration frequency the mean values of the corrected mixing ratios are 160 <inline-formula><mml:math id="M87" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 10, 357 <inline-formula><mml:math id="M88" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 14, and 2029 <inline-formula><mml:math id="M89" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 197 ppbv for CO, N<inline-formula><mml:math id="M90" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O, and CH<inline-formula><mml:math id="M91" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, respectively. Therefore, they are in the range of the standard errors of the calibration gas, which are for CO 161 <inline-formula><mml:math id="M92" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9 ppbv, for N<inline-formula><mml:math id="M93" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O 358 <inline-formula><mml:math id="M94" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 22 ppbv, and for CH<inline-formula><mml:math id="M95" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> 2025 <inline-formula><mml:math id="M96" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7 ppbv. This calibration setting was adopted for the rest of the campaign.</p>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Instrument comparison for ambient data</title>
      <p id="d1e1464">The long-established TRISTAR instrument (e.g., <xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx26 bib1.bibx27 bib1.bibx29" id="altparen.36"/>) was deployed simultaneously to ATTILA within the CAFE Brazil campaign, measuring also CO and N<inline-formula><mml:math id="M97" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O. Both IR spectrometers operated throughout the whole campaign without any technical malfunctions. A comparison of these two IR spectrometers has been done to investigate the instrumental performance of the newly developed spectrometer. This is especially important for future planning, as ATTILA can take over CO measurements and TRISTAR could be modified to measure other trace gases like, e.g., formaldehyde due to its high stability and precision. Please note that the general measurement focus of the instrument is on CO, as the N<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O absorption line is only used to track the spectra on its right position, especially at high altitudes where CO concentrations are markedly lower. The CH<inline-formula><mml:math id="M99" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> data will be shown in the next section.</p>
      <?pagebreak page3560?><p id="d1e1497">The total in-flight measurement uncertainty MU over the whole campaign is estimated by using <inline-formula><mml:math id="M100" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M101" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>, described in Sect. <xref ref-type="sec" rid="Ch1.S3"/> and calculated as follows:
          <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M102" display="block"><mml:mrow><mml:mi mathvariant="normal">MU</mml:mi><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:msup><mml:mi>P</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msqrt><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Another measure for data comparison is the accuracy Acc, representing the standard error of the in-flight calibration gas. Acc of the secondary standard used as calibration gas during the flights is calculated via
          <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M103" display="block"><mml:mrow><mml:mi mathvariant="normal">Acc</mml:mi><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi>F</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">err</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">mean</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msqrt><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        including the reproducibility of the primary standard measurements <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mi>F</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the standard deviation divided by the number of points of the secondary standard measurements,  and the primary standard error over its mean content. The primary standard errors are given by the manufacturer (Luxfer Gas Cylinders Ltd., Colwick, Nottingham, England) as 0.36, 0.21, and 0.24 ppbv for CO, N<inline-formula><mml:math id="M105" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O, and CH<inline-formula><mml:math id="M106" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, respectively.</p>
      <p id="d1e1628">MU is in the lower percent range for both instruments,  as shown in Table <xref ref-type="table" rid="Ch1.T1"/>. In comparison to the performance of TRISTAR, ATTILA's MU is increased by a factor of 3. Acc is for all tracers in the per mille range, except for CH<inline-formula><mml:math id="M107" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> which is at 5.5 %.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e1646">Mean precision <inline-formula><mml:math id="M108" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>, reproducibility <inline-formula><mml:math id="M109" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> including their 1<inline-formula><mml:math id="M110" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula>, and the total measurement uncertainty MU calculated using Eq. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) for all research flights of the CAFE Brazil campaign for the ATTILA and TRISTAR spectrometers. The accuracy Acc of the secondary standard used as calibration gas during the flights is calculated using Eq. (<xref ref-type="disp-formula" rid="Ch1.E3"/>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Tracer</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M111" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M112" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M113" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M114" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M115" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M116" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">MU</oasis:entry>
         <oasis:entry colname="col5">Acc</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(%)</oasis:entry>
         <oasis:entry colname="col3">(%)</oasis:entry>
         <oasis:entry colname="col4">(%)</oasis:entry>
         <oasis:entry colname="col5">(%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">CO (ATTILA)</oasis:entry>
         <oasis:entry colname="col2">2.6 <inline-formula><mml:math id="M117" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.2</oasis:entry>
         <oasis:entry colname="col3">9.8 <inline-formula><mml:math id="M118" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.9</oasis:entry>
         <oasis:entry colname="col4">10.1</oasis:entry>
         <oasis:entry colname="col5">0.3</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">N<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O (ATTILA)</oasis:entry>
         <oasis:entry colname="col2">1.4 <inline-formula><mml:math id="M120" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.3</oasis:entry>
         <oasis:entry colname="col3">9.1 <inline-formula><mml:math id="M121" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 4.2</oasis:entry>
         <oasis:entry colname="col4">9.2</oasis:entry>
         <oasis:entry colname="col5">0.1</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CH<inline-formula><mml:math id="M122" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> (ATTILA)</oasis:entry>
         <oasis:entry colname="col2">4.2 <inline-formula><mml:math id="M123" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.5</oasis:entry>
         <oasis:entry colname="col3">17 <inline-formula><mml:math id="M124" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 9.5</oasis:entry>
         <oasis:entry colname="col4">17.5</oasis:entry>
         <oasis:entry colname="col5">5.5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CO (TRISTAR)</oasis:entry>
         <oasis:entry colname="col2">0.3 <inline-formula><mml:math id="M125" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04</oasis:entry>
         <oasis:entry colname="col3">3.5 <inline-formula><mml:math id="M126" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.9</oasis:entry>
         <oasis:entry colname="col4">3.5</oasis:entry>
         <oasis:entry colname="col5">0.3</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">N<inline-formula><mml:math id="M127" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O (TRISTAR)</oasis:entry>
         <oasis:entry colname="col2">0.2<inline-formula><mml:math id="M128" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.04</oasis:entry>
         <oasis:entry colname="col3">2.97 <inline-formula><mml:math id="M129" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2.05</oasis:entry>
         <oasis:entry colname="col4">3.0</oasis:entry>
         <oasis:entry colname="col5">0.1</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{1}?></table-wrap>

      <p id="d1e1956">For the comparison, a time resolution adjustment has been made. As an example, a section of the research flight number  14 on  12 January 2023 is shown in Fig. <xref ref-type="fig" rid="Ch1.F7"/> where extreme CO concentrations could be measured with both instruments, as the aircraft flew through several fresh biomass burning plumes at a low altitude in the boundary layer of about 760 m. In Fig. <xref ref-type="fig" rid="Ch1.F7"/> two smaller plumes are displayed with high concentrations above 1000 ppbv. There is a delay of 5 s visible between the two instruments, which is due to the differences in their flow rate and cell volumes. TRISTAR has a flow rate of 3 L min<inline-formula><mml:math id="M130" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and hence exchanges the sampled air much faster than ATTILA. This time delay of 5 s has been corrected for further analysis of the ATTILA data. Another consequence of the time resolution difference is that TRISTAR measures higher concentrations in a short extreme event which ATTILA can only see smoothed out with its flow of 0.2 L min<inline-formula><mml:math id="M131" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. High-frequency features below 5 s cannot be measured with ATTILA. This, specifically, shows the first peak at 16:47:45 UTC of the biomass burning event displayed in Fig. <xref ref-type="fig" rid="Ch1.F7"/>. Nevertheless, these flow limitations are only a few seconds,  which is still a good time resolution for airborne measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e1991">Timeline of CO mixing ratios from ATTILA in red and TRISTAR in blue measured during flight number  14 on 12 January 2023. In black, the GPS altitude from the BAHAMAS instrument (DLR, Oberpfaffenhofen, Germany) during the flight is displayed. All data are at 1 Hz resolution. The CO measurements have been fully processed and corrected by drift, pressure change,  and Lambert–Beer.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f07.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e2002">Correlation of all CO ambient measurements from ATTILA on the <inline-formula><mml:math id="M132" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis and from TRISTAR on the <inline-formula><mml:math id="M133" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis over the whole CAFE Brazil campaign, excluding the two test flights. The data have been fully processed and corrected. A least orthogonal distance fit, displayed as a black line, has been performed, including the MU values presented in Table <xref ref-type="table" rid="Ch1.T1"/>. Outliers are mostly related to extreme aircraft movements during takeoffs and landings.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f08.png"/>

      </fig>

      <p id="d1e2027">In Fig. <xref ref-type="fig" rid="Ch1.F8"/> the correlation of all CO measurements throughout the whole campaign from both IR spectrometers is displayed. Additionally, a least orthogonal distance fit has been performed, including their MUs (Table <xref ref-type="table" rid="Ch1.T1"/>). The scale has been slightly adjusted to focus on typical atmospheric concentrations instead of extreme events. Except for some outliers, which can be related to extreme aircraft movements and changes during some takeoffs and landings, the 1 Hz measurements agree quite well with a slope of 1.0022 <inline-formula><mml:math id="M134" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.0004 and a <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of 0.83. The differences in the data sets are mainly due to their different instrumental noise. TRISTAR features a more robust design, a better insulation and temperature control through a heating plate, and a stabilized and more extensive optical system,  and its operation can profit from many years of experience and further improvement of the spectrometer throughout numerous campaigns (<xref ref-type="bibr" rid="bib1.bibx29 bib1.bibx27 bib1.bibx26" id="altparen.37"/>,  and citations within). Therefore, fast atmospheric changes and unusual extreme events in the boundary layer with CO measurements higher than 600 ppbv can be better detected by the TRISTAR instrument. Nevertheless, an averaged time resolution of 10 s provides a <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of 0.89 with a slope of 0.9811 <inline-formula><mml:math id="M137" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.0003 and is an adequate time resolution eliminating nearly all the instrumental noise. The correlation of the 10 s averaged data is displayed in Fig. S4 in the Supplement.</p>
      <?pagebreak page3561?><p id="d1e2075">In Fig. <xref ref-type="fig" rid="Ch1.F9"/> the 1 Hz data have been binned into 500 m boxes from the whole campaign data set excluding the two test flights. In green and black the mean, median,  and standard deviation of ATTILA and TRISTAR, respectively, are shown. A few assumptions can be made. First of all, below 1 km several extreme events have been measured due to anthropogenic emissions and biomass burning events. As explained above, due to TRISTAR's higher time resolution and flow, short-term changes in extreme mixing ratios can be detected better with TRISTAR, leading to a higher variation in the standard deviation near the surface compared to ATTILA CO measurements. Nevertheless, their mean values differ only by 7 ppbv. Furthermore, throughout the free troposphere above 2 km the instruments agree quite well in their mean values of differences up to maximum <inline-formula><mml:math id="M138" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>2 ppbv. Especially above 12 km the measurements are almost identical even with respect to their standard deviations and median values.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e2089">Vertical profile of all CO measurements over the whole campaign, excluding the two test flights. Both profiles are binned in 500 m boxes measured by TRISTAR with black and ATTILA with green lines. Additionally, the medians are shown with dashed lines and the standard deviation of the measurements as shaded areas.</p></caption>
        <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f09.png"/>

      </fig>

      <p id="d1e2098">In conclusion, the ATTILA instrument is suitable for high-resolution measurements of atmospheric variations and can reliably detect atmospheric features during airborne measurements. In large part, due to its minimalist and robust design during airborne measurements, this instrument can be used for dynamical and chemical investigations of the atmosphere. Therefore, atmospheric spatial tracer distributions, vertical profiles,  and qualitative indication of potential source and sink regions through chemical reactions can be investigated. For example, for flux measurements which require time resolutions smaller than 1 Hz and a high data quality <xref ref-type="bibr" rid="bib1.bibx19" id="paren.38"/>, the ATTILA instrument still has to be improved.</p>
</sec>
<sec id="Ch1.S5">
  <label>5</label><title>Results from CAFE Brazil</title>
      <p id="d1e2113">With a base in Manaus, Brazil (3°6<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 60°1<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W), the CAFE Brazil aircraft campaign was carried out over the Amazon rainforest from December 2022 until the end of January 2023. Various instruments on board of the HALO aircraft measured about 50 different trace gases, radicals,  and aerosol particle properties in 16 local flights over the Amazon rainforest region from a few meters above the forest up to about 15 km in altitude. In additional to the local research flights, four transfer flights with a stopover in Sal, Cabo Verde,  and two test flights over Germany were  carried out within the campaign. The main research focus lay on the investigation of oxidation processes and their control of new particle formation and particle growth over the rainforest region. Further objectives of the campaign were the investigation of the<?pagebreak page3562?> general distribution of the measured variables over the pristine forest as well as over regions influenced by anthropogenic activity and their transport through deep convection into the tropical tropopause layer (TTL) <xref ref-type="bibr" rid="bib1.bibx7" id="paren.39"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e2139">Median of the meridional profiles of the CO <bold>(a)</bold> and CH<inline-formula><mml:math id="M141" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> <bold>(b)</bold> measurements of the CAFE Brazil campaign over the Amazon rainforest derived from ATTILA. The 1 Hz data are binned into a 1 ° <inline-formula><mml:math id="M142" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.5 km subset for CO and into a 2° <inline-formula><mml:math id="M143" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2 km subset for CH<inline-formula><mml:math id="M144" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> due to differences in their MU values. Additionally, for methane the bins with less than 1000 data points have been removed for a better statistical representation.</p></caption>
        <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://amt.copernicus.org/articles/17/3553/2024/amt-17-3553-2024-f10.png"/>

      </fig>

      <p id="d1e2187">In Fig. <xref ref-type="fig" rid="Ch1.F10"/> meridional profiles of CO (left panel) and CH<inline-formula><mml:math id="M145" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> (right panel) measured by ATTILA over the Amazon rainforest from the CAFE Brazil campaign are shown. The bin size of those distributions was chosen according to the individual MUs of the trace-gas measurements presented in Table <xref ref-type="table" rid="Ch1.T1"/>. Therefore, CO is binned into 1 ° <inline-formula><mml:math id="M146" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.5 km bins and CH<inline-formula><mml:math id="M147" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> into 2 ° <inline-formula><mml:math id="M148" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2 km bins. All data are corrected by drift, cell pressure variations, and Lambert–Beer. The CH<inline-formula><mml:math id="M149" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> data are additionally corrected according to the water dilution effect, which is described in more detail in the study of <xref ref-type="bibr" rid="bib1.bibx10" id="text.40"/>.</p>
      <p id="d1e2240">Focusing on CO in the left panel of Fig. <xref ref-type="fig" rid="Ch1.F10"/>, we can see three regions of enhanced and two regions of lower CO concentrations. The enhanced values originate from anthropogenic emissions and biomass burning events which can be vertically transported by convection. Specifically, in the lower altitudes below approx. 3 km, in the boundary layer, mean values reach 140 ppbv. Mostly, these are located around 60° W, which indicates anthropogenic emissions of the city Manaus (3°6<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 60°1<inline-formula><mml:math id="M151" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W) as well as extreme single biomass burning events, which have been captured around 4°5<inline-formula><mml:math id="M152" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 62°5<inline-formula><mml:math id="M153" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W. Those elevated concentrations are vertically transported from the boundary layer into the free troposphere through deep convection and could be probed in the outflow of those convective cells several times between 10 and 13 km mostly west of Manaus. During one research flight towards the east, another strong outflow event could be measured up to 14 km.</p>
      <p id="d1e2281">The lower concentrations are influenced by stratospheric air which gets transported and mixed downwards into the TTL. Two regions which are dominated by stronger stratospheric influence during the campaign are between 55 and 60° W above 13 km and around 69° W down to 12 km. That influence propagates quite deep into the free troposphere. This might be affected by gravity waves in the lee of the Andes but has not been investigated further in this study.</p>
      <p id="d1e2284">The mean concentration of CH<inline-formula><mml:math id="M154" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> over the whole meridional profile above the Amazon rainforest is 1932 ppbv. According to the NOAA database the monthly mean values for December 2022 and January 2023 are 1924.72 and 1922.16 ppbv, respectively <xref ref-type="bibr" rid="bib1.bibx13" id="paren.41"/>. With an accuracy of 5.5 % (Table <xref ref-type="table" rid="Ch1.T1"/>) for the CH<inline-formula><mml:math id="M155" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> data and taking into account that the NOAA mean value has been measured over the whole vertical atmospheric column above  the  remote marine surface, these values are in quite good agreement. Nevertheless, the vertical profile of CH<inline-formula><mml:math id="M156" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> also shows a different vertical distribution. Below 4 km the mean value is 2030 ppbv, and above it is 1907 ppbv. Hence, there might be a source of CH<inline-formula><mml:math id="M157" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> over the Amazon rainforest region. According to the global database from NOAA <xref ref-type="bibr" rid="bib1.bibx13" id="paren.42"/> there is a drastically increasing trend in atmospheric methane in the recent years. A modeling study by <xref ref-type="bibr" rid="bib1.bibx36" id="text.43"/> using a wetland model, referring to the years 2000 to 2021, reports large increases in CH<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> emissions since 2000 with the strongest increase in the years 2020 and 2021. Based on the satellite-borne NOAA database, <xref ref-type="bibr" rid="bib1.bibx21" id="text.44"/> suspected higher natural methane emissions,  while anthropogenic emissions probably decreased over the COVID-19 lockdown. The positive feedback of natural methane emissions is suggested to be mostly from wetlands,  as warming and more moisture through climate change can contribute to this effect. However, as the CAFE Brazil campaign generated a statistically representative and unique data set of in situ measurements over the Amazon rainforest, those increased CH<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> values will be further investigated in another study.</p>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <label>6</label><title>Conclusions</title>
      <p id="d1e2364">In this study, a newly developed quantum cascade laser absorption spectrometer, named ATTILA, has been presented and intensively characterized in its in-flight measurement performance. This work not only describes the instrument's functional properties and technical setup, but it identifies possible data interference for airborne trace-gas measurements.</p>
      <?pagebreak page3563?><p id="d1e2367">The advantages of the instrumental design are its low weight, size,  and costs and its simplicity, which makes it an ideal airborne trace-gas IR spectrometer and possibly attractive for commercial use. This instrument features two cells, which allows simultaneous measurements of a minimum of two tracers. Based on a test flight from a recent airborne research campaign, CAFE Brazil, the instrument has been characterized and influences of extreme environmental changes on the signal could be identified. By identifying these influences, postprocessing of the signal allows for improvement in the data quality. Therefore, temperature drift behavior, linear pressure changes,  and short-term fluctuations can be corrected to some extent through frequent calibrations, line-shifting,  and appropriate averaging of the data.  A comparison with a similar, more established IR spectrometer, TRISTAR, has been used to verify the overall assumption of the quality of the data set. It has been shown that despite ATTILA's minimalist design and the challenges of an airborne platform, the measurements are of high quality, especially at constant flight levels and high altitudes, as its main shortcomings are related to abrupt changes in altitude and extreme aircraft movements. Therefore, the compact IR spectrometer ATTILA is capable of providing detailed information about spatial distributions in the atmosphere. The data set from the CAFE Brazil campaign has been briefly presented and discussed,  and atmospheric features could be derived in the CO and CH<inline-formula><mml:math id="M160" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> measurements over the Amazon rainforest. Especially for CO, only minor limitations of the data quality could be identified,  and detailed atmospheric variations driven by dynamical processes could be located. For CH<inline-formula><mml:math id="M161" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, there are more limitations than for the CO measurements due to the optical setup. Nevertheless, a general overview of the CH<inline-formula><mml:math id="M162" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> vertical distribution over the Amazon rainforest with enhanced concentrations in lower altitudes could be shown.</p>
      <p id="d1e2397">Through more field experience, ATTILA can be further improved. The main limitations are the influences of abrupt aircraft movements which cause nonlinear etalon structures. These drawbacks can be addressed by more precise adjustment and improvement in the optical setup. With a more stable optical adjustment, the influences on the signal caused by fluctuating temperature and pressure or strong aircraft movements will be further reduced.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e2404">All data measured during the CAFE Brazil campaign and codes which have been used are available upon request. The BAHAMAS data can be found​​​​​​​ in the HALO database (<ext-link xlink:href="https://doi.org/10.17616/R39Q0T" ext-link-type="DOI">10.17616/R39Q0T</ext-link>​​​​​​​, <xref ref-type="bibr" rid="bib1.bibx8" id="altparen.45"/>). The CO and CH<inline-formula><mml:math id="M163" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> data will be uploaded by the end of 2024.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e2422">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/amt-17-3553-2024-supplement" xlink:title="pdf">https://doi.org/10.5194/amt-17-3553-2024-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e2431">HF and LO designed the study; JL and HF planned the campaign; LO and LLR performed the measurements; LO and LLR processed and analyzed the data; UP, RK, DC, FK, RW,  and HF designed the instrument; UP, RK, DC, LLR,  and LO optimized the instrument; LO wrote the manuscript draft with contributions from all co-authors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e2437">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e2443">Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. While Copernicus Publications makes every effort to include appropriate place names, the final responsibility lies with the authors.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e2449">The authors gratefully acknowledge the whole CAFE Brazil team, including the atmospheric department of the University of Frankfurt, Karlsruhe Institute of Technology, and the Deutsches Zentrum für Luft- und Raumfahrt (DLR) in Oberpfaffenhofen, whose support was essential for the project.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e2454">The article processing charges for this open-access publication were covered by the Max Planck Society.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e2461">This paper was edited by Glenn Wolfe and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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