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<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "https://jats.nlm.nih.gov/nlm-dtd/publishing/3.0/journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">AMT</journal-id><journal-title-group>
    <journal-title>Atmospheric Measurement Techniques</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1867-8548</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-19-249-2026</article-id><title-group><article-title>An algorithm to retrieve peroxyacetyl nitrate from AIRS</article-title><alt-title>PAN from AIRS</alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Laughner</surname><given-names>Joshua L.</given-names></name>
          <email>josh.laughner@jpl.nasa.gov</email>
        <ext-link>https://orcid.org/0000-0002-8599-4555</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Kulawik</surname><given-names>Susan S.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Payne</surname><given-names>Vivienne H.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Bay Area Environmental Research Institute/NASA Ames, Mountain View, California, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Joshua L. Laughner (josh.laughner@jpl.nasa.gov)</corresp></author-notes><pub-date><day>14</day><month>January</month><year>2026</year></pub-date>
      
      <volume>19</volume>
      <issue>1</issue>
      <fpage>249</fpage><lpage>276</lpage>
      <history>
        <date date-type="received"><day>15</day><month>May</month><year>2025</year></date>
           <date date-type="rev-request"><day>3</day><month>July</month><year>2025</year></date>
           <date date-type="rev-recd"><day>8</day><month>October</month><year>2025</year></date>
           <date date-type="accepted"><day>3</day><month>December</month><year>2025</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2026 Joshua L. Laughner et al.</copyright-statement>
        <copyright-year>2026</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026.html">This article is available from https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026.html</self-uri><self-uri xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d2e104">Herein, we describe an approach to retrieve free tropospheric columns of peroxyacyl nitrates (PANs) from radiances observed by the Atmospheric Infrared Sounder (AIRS). AIRS has provided daily global coverage since its launch in 2002, making the AIRS data a valuable long term record. Although the instrument is very radiometrically stable, the radiance noise level is large enough to present a challenge when retrieving a weak absorber such as PAN. To address this, spectral windows were selected to minimize interference from other species as much as possible and a set of filters was developed to predict whether a PAN value retrieved from AIRS is within 0.2 <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> or 50 % of what would be retrieved from the Cross-track Infrared Sounder (CrIS) and to remove spurious signals caused by specific surface features or clouds. We show that AIRS is capable of retrieving PAN plumes with very high concentrations of PAN (such as those from significant wildfires) that have similar spatial extent as seen by CrIS and that PAN retrieved from AIRS has good correlation with CrIS given sufficient averaging. We conclude with recommendations for users to help ensure that these data are used appropriately.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>National Aeronautics and Space Administration</funding-source>
<award-id>80NM0018D0004</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d2e124">Acyl peroxy nitrates (APNs) are a family of air pollutants formed by the reaction of a peroxy radical with <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Peroxyacetyl nitrate (PAN, <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">O</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi mathvariant="normal">OONO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) is the most commonly considered member of this family, resulting from the reaction of a peroxyacetyl radical with <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx62" id="paren.1"/>. PAN exists in equilibrium with its reactants and is more stable at colder temperatures. Because of this, PAN often acts as a temporary reservoir of nitrogen oxides (<inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), enhancing long range transport of <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to downwind regions <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx44 bib1.bibx29" id="paren.2"><named-content content-type="pre">e.g.,</named-content></xref>. In addition to redistributing <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the associated potential for photochemical production of secondary pollutants, PAN itself is toxic to plants and an eye irritant for humans <xref ref-type="bibr" rid="bib1.bibx25" id="paren.3"/>.</p>
      <p id="d2e218">PAN is neither a criteria air pollutant nor a designated hazardous air pollutant by the United States Environmental Protection Agency <xref ref-type="bibr" rid="bib1.bibx70" id="paren.4"/> or the World Health Organization <xref ref-type="bibr" rid="bib1.bibx83" id="paren.5"/>. As a result, routine in situ monitoring of PAN is rare. However, targeted campaigns such as the Arctic Research of the Composition of the Troposphere from Aircraft and Satellites <xref ref-type="bibr" rid="bib1.bibx2" id="paren.6"><named-content content-type="pre">ARCTAS,</named-content></xref>, Western Wildfire Experiment for Cloud Chemistry, Aerosol Absorption, and Nitrogen <xref ref-type="bibr" rid="bib1.bibx31" id="paren.7"><named-content content-type="pre">WE-CAN</named-content></xref>, or Fire Influence on Regional to Global Environments and Air Quality <xref ref-type="bibr" rid="bib1.bibx77" id="paren.8"><named-content content-type="pre">FIREX-AQ,</named-content></xref> include measurements of PAN to more fully constrain the nitrogen cycle in the outflow of the phenomenon of interest for that campaign. Other campaigns focused on measuring background air, such as HIAPER Pole-to-Pole Observations <xref ref-type="bibr" rid="bib1.bibx79" id="paren.9"><named-content content-type="pre">HIPPO,</named-content></xref> or the Atmospheric Tomography Mission <xref ref-type="bibr" rid="bib1.bibx72" id="paren.10"><named-content content-type="pre">ATom,</named-content></xref> include PAN measurements to quantify its effect on remote air.</p>
      <p id="d2e253">Techniques for remote sensing of PAN have been developed in the last two decades. PAN has very similar absorption features to other members of the APN chemical family <xref ref-type="bibr" rid="bib1.bibx42" id="paren.11"><named-content content-type="pre">e.g., peroxypropionyl nitrate, peroxy-<inline-formula><mml:math id="M8" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>-butyryl nitrate, peroxy-<inline-formula><mml:math id="M9" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>-valeryl nitrate, peroxyacryloyl nitrate, and peroxycrotonyl nitrate,</named-content></xref>. Thus, retrievals of “PAN” are in fact retrievals of a mixture of APNs. However, PAN typically comprises the majority (75 % to 90 %) of APNs in both remote areas <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx57 bib1.bibx80 bib1.bibx21" id="paren.12"/> and urban plumes <xref ref-type="bibr" rid="bib1.bibx33" id="paren.13"/>. The fraction may be lower in wildfire plumes; <xref ref-type="bibr" rid="bib1.bibx53" id="text.14"/> hypothesize that an unknown APN could explain discrepancies in <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> ratios between their observations and model. Given the predominance of PAN as the majority APN, the convention is to refer to the satellite products as retrieving “PAN” or “PANs”, and we adopt that convention for this manuscript.</p>
      <p id="d2e299">PAN has been retrieved from ground-based instruments as well as limb- and nadir- viewing space-based platforms. Several sites in the Network for Detection of Atmospheric Composition Change (NDACC) perform retrievals of PAN from ground-based spectra <xref ref-type="bibr" rid="bib1.bibx37" id="paren.15"/>. From space, PAN in the upper troposphere/lower stratosphere has been retrieved from limb measurements from CRyogenic Infrared Spectrometers and Telescopes for the Atmosphere <xref ref-type="bibr" rid="bib1.bibx74" id="paren.16"><named-content content-type="pre">CRISTA,</named-content></xref> on board two space shuttle flights in the 1990s, the Michelson Interferometer for Passive Atmospheric Sounding <xref ref-type="bibr" rid="bib1.bibx26 bib1.bibx43 bib1.bibx78 bib1.bibx19 bib1.bibx55" id="paren.17"><named-content content-type="pre">MIPAS,</named-content></xref>, and Atmospheric Chemistry Experiment-Fourier Transform Spectrometer <xref ref-type="bibr" rid="bib1.bibx71" id="paren.18"><named-content content-type="pre">ACE-FTS,</named-content></xref>. Nadir viewing instruments, such as the Tropospheric Emission Spectrometer <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx49" id="paren.19"><named-content content-type="pre">TES,</named-content></xref>, the Infrared Atmospheric Sounding Interferometer <xref ref-type="bibr" rid="bib1.bibx17 bib1.bibx15 bib1.bibx23" id="paren.20"><named-content content-type="pre">IASI,</named-content></xref>, and the Cross-track Infrared Sounder <xref ref-type="bibr" rid="bib1.bibx51" id="paren.21"><named-content content-type="pre">CrIS,</named-content></xref>, provide the ability to retrieve column amounts of PAN sensitive to the mid-troposphere.</p>
      <p id="d2e337">Consistent records of atmospheric trace gas concentrations are essential to monitor how air quality is changing over time. A major challenge in this respect is addressing instrument differences among satellites to produce records spanning multiple decades. The Community Long-term Infrared Microwave Combined Atmospheric Product System (CLIMCAPS) product <xref ref-type="bibr" rid="bib1.bibx65 bib1.bibx66" id="paren.22"/> invested significant effort in applying a consistent retrieval to radiances from both the Atmospheric Infrared Sounder (AIRS) and the various CrIS instruments as well as minimizing cross-correlations between retrieved variables <xref ref-type="bibr" rid="bib1.bibx64" id="paren.23"/>. <xref ref-type="bibr" rid="bib1.bibx67" id="text.24"/> discuss an information content approach to minimizing differences in CLIMCAPS retrievals. CLIMCAPS produces records spanning the more than two decades since AIRS launched in 2002 that include profiles of atmospheric temperature, <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, but does not include PAN.</p>
      <p id="d2e415">The TRopospheric Ozone and its Precurors from Earth System Sounding (TROPESS) project also focuses on applying a consistent retrieval algorithm for various trace gases to radiances from a variety of instruments. This includes thermal radiances observed by AIRS and CrIS, as well as radiances in other parts of the electromagnetic spectrum from the Ozone Monitoring Instrument (OMI) and, in the future, the TROPOspheric Monitoring Instrument (TROPOMI).  <xref ref-type="bibr" rid="bib1.bibx14" id="text.25"/> demonstrated the capability with TROPESS to retrieve <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from both AIRS and CrIS. They validated <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from both instruments against aircraft data and found that, although the retrievals from the two instruments are broadly similar, there are differences in the agreement with aircraft profiles. However, after accounting for the smoothing errors, the biases fall below 1 <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. <xref ref-type="bibr" rid="bib1.bibx54" id="text.26"/> evaluated <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> trends in three TROPESS products using thermal radiances from AIRS and CrIS and combined thermal and ultraviolet radiances from AIRS and OMI. They compared these products to ozonesonde data, and found that trends in the bias of the retrieved <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> were significantly less than the reported <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> trends.</p>
      <p id="d2e488">The ability to retrieve tropospheric columns of PAN from space has enabled scientific studies of various sources of air pollution. Several studies made use of the TES PAN retrievals to investigate factors driving PAN over Eurasia <xref ref-type="bibr" rid="bib1.bibx87 bib1.bibx30" id="paren.27"/> and the tropics <xref ref-type="bibr" rid="bib1.bibx50" id="paren.28"/> as well as the prevalence of PAN in smoke-impacted air masses over North America <xref ref-type="bibr" rid="bib1.bibx22" id="paren.29"/>. Other studies <xref ref-type="bibr" rid="bib1.bibx87 bib1.bibx30" id="paren.30"/> found that a combination of seasonal temperature, lightning, biomass burning, and microbial emissions influenced the PAN outflow from Eurasia, while <xref ref-type="bibr" rid="bib1.bibx50" id="text.31"/> found that the dominant factors in the tropics were biogenic emissions and lightning, with some influence from biomass burning during the study period. <xref ref-type="bibr" rid="bib1.bibx32" id="text.32"/> used PAN retrieved from CrIS to quantify the chemical production of PAN in the outflow from the Pole Creek Fire in central Utah, USA. <xref ref-type="bibr" rid="bib1.bibx60" id="text.33"/> combined PAN values retrieved from TES and CrIS and found that PAN columns over Mexico City had no trend over a time period when <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns decreased. <xref ref-type="bibr" rid="bib1.bibx61" id="text.34"/> used PAN columns retrieved from CrIS to study whether there were statistically significant changes in PAN amounts over eight megacities during the COVID pandemic. They found a mix of increases, decreases, and no change in PAN columns among the megacities. More recently, <xref ref-type="bibr" rid="bib1.bibx86" id="text.35"/> used PAN retrieved from IASI to study transport of PANs across the Pacific and concluded that the effect on ozone in the western US was less than 1 <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. These studies provide examples of how space-based retrievals of PAN, particularly in synergy with other space-based trace gas observations, can provide valuable information about how the meteorological conditions, episodic events, and dominant chemical regime influence air quality in different regions.</p>

<table-wrap id="T1" specific-use="star"><label>Table 1</label><caption><p id="d2e541">Comparison of relevant AIRS and CrIS instrument characteristics. Spectral resolution was computed from the L1B files. All other values are from the cited references. NEdT stands for “noise equivalent differential temperature,” and the NEdT value for CrIS was estimated from Fig. 10 of <xref ref-type="bibr" rid="bib1.bibx84" id="paren.36"/> for CrIS full resolution spectra.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">AIRS</oasis:entry>
         <oasis:entry colname="col3">CrIS</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Spectral resolution at 790 <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M26" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">0.355</oasis:entry>
         <oasis:entry colname="col3">0.625</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Field of view diameter (<inline-formula><mml:math id="M27" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">15 <xref ref-type="bibr" rid="bib1.bibx73" id="paren.37"/></oasis:entry>
         <oasis:entry colname="col3">14 <xref ref-type="bibr" rid="bib1.bibx85" id="paren.38"/></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Spatial sampling (<inline-formula><mml:math id="M28" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">13.5 <xref ref-type="bibr" rid="bib1.bibx59" id="paren.39"/></oasis:entry>
         <oasis:entry colname="col3">15 <xref ref-type="bibr" rid="bib1.bibx76" id="paren.40"/></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NEdT (<inline-formula><mml:math id="M29" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">0.1 to 0.8 <xref ref-type="bibr" rid="bib1.bibx73" id="paren.41"/></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M30" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.04 <xref ref-type="bibr" rid="bib1.bibx84" id="paren.42"/></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e693">In this work, we demonstrate the first retrieval of PAN from AIRS. As AIRS was launched in 2002, this has the potential to provide the longest continual record of PAN from a nadir viewing instrument. Our approach is based on that of <xref ref-type="bibr" rid="bib1.bibx51" id="text.43"/>. We begin with an overview of the AIRS and CrIS instruments, which are both used in this work. Then, we review the MUlti-SpEctra, MUlti-SpEcies, MUlti-Sensors (MUSES) algorithm which provides a retrieval framework for this work. Next, we describe the specific MUSES configuration we use. Fourth, we address several challenges encountered in adapting the approach of <xref ref-type="bibr" rid="bib1.bibx51" id="text.44"/> to AIRS spectra. Finally, we close with recommendations to users of the new AIRS PAN product. Due to the computational cost of this retrieval, our analysis focuses on a few days with significant variation in PAN from major fires in the US and Australia. This product will be incorporated in the operational TROPESS data processing in the future (<ext-link xlink:href="https://disc.gsfc.nasa.gov/information/mission-project?keywords=tropess&amp;title=TROPESS">https://disc.gsfc.nasa.gov/information/mission-project?keywords=tropess&amp;title=TROPESS</ext-link>, last access: 11 September 2025), which will enable analysis on a longer timeseries of data.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Data sources and algorithm background</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>AIRS radiances</title>
      <p id="d2e720">The Atmospheric Infrared Sounder (AIRS) instrument is carried on board the Aqua satellite. Aqua was launched in May 2002 and flies in a polar, sun synchronous orbit. For most of its mission, it had a local ascending equator crossing time of <inline-formula><mml:math id="M31" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 13:35 LT. Starting in 2022, it began to drift to a later crossing time; as of early 2025, it has an equator crossing time of <inline-formula><mml:math id="M32" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 14:30 LT (<uri>https://aqua.nasa.gov/</uri>, last access: 12 March 2025).</p>
      <p id="d2e740">AIRS is a grating spectrometer, covering three spectral bands (approximately 650 to 1140 <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, 1220 to 1610 <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, and 2170 to 2670 <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) with 17 detector arrays and a nominal spectral resolution of <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M37" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1200 <xref ref-type="bibr" rid="bib1.bibx5 bib1.bibx73" id="paren.45"><named-content content-type="pre">ranging between 1086 and 1570,</named-content></xref>. The original calibration is described by <xref ref-type="bibr" rid="bib1.bibx47" id="text.46"/> and an update is given in <xref ref-type="bibr" rid="bib1.bibx48" id="text.47"/>. AIRS's radiometric calibration has been very stable over its lifetime, with <inline-formula><mml:math id="M38" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mK</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> drift between 2017 <xref ref-type="bibr" rid="bib1.bibx6" id="paren.48"/> and between <inline-formula><mml:math id="M40" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3 and <inline-formula><mml:math id="M41" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>6 <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mK</mml:mi></mml:mrow></mml:math></inline-formula> since <xref ref-type="bibr" rid="bib1.bibx7" id="paren.49"/>. Table <xref ref-type="table" rid="T1"/> compares some of the relevant instrument characteristics of AIRS and CrIS. For a more in-depth description of the differences between the AIRS and CrIS instruments, please see Table S1 of <xref ref-type="bibr" rid="bib1.bibx67" id="text.50"/> and Table 1 of <xref ref-type="bibr" rid="bib1.bibx64" id="text.51"/>. In this work, we use AIRS level 1B radiances from version 5 of the AIRIBRAD product <xref ref-type="bibr" rid="bib1.bibx1" id="paren.52"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>CrIS radiances and the CrIS PANs product</title>
      <p id="d2e892">At time of writing, there are three operational Cross-track Infrared Sounder (CrIS) instruments. The first is on board the Suomi-NPP satellite, launched in October 2011, followed by copies on the JPSS-1/NOAA-20 and JPSS-2/NOAA-21 satellites, launched in November 2017 and November 2022, respectively. All three are in sun synchronous orbits with ascending local equator crossing times around 13:30 LT. Unlike AIRS, CrIS is a Fourier transform spectrometer that observes nine fields of view in a 3 <inline-formula><mml:math id="M43" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 3 array simultaneously. It performs an across-track scan of 30 view positions. The fields of view are <inline-formula><mml:math id="M44" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 15 <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> in diameter <xref ref-type="bibr" rid="bib1.bibx85" id="paren.53"/>.</p>
      <p id="d2e920"><xref ref-type="bibr" rid="bib1.bibx51" id="text.54"/> used radiances from the CrIS instrument on board Suomi-NPP (S-NPP) <xref ref-type="bibr" rid="bib1.bibx68" id="paren.55"><named-content content-type="pre">specifically the NASA version 2 level 1B radiances,</named-content></xref> to retrieve PANs. CrIS measures in three spectral bands: long-wave IR (650 to 1095 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), midwave IR (1210 to 1750 <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), and short-wave IR (2155 to 2550 <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) <xref ref-type="bibr" rid="bib1.bibx27" id="paren.56"/>. At launch, the CrIS S-NPP instrument was operated in “normal spectral resolution” mode, with the bands measuring at 0.625, 1.25, and 2.5 <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, respectively. In December 2014, it was switched to “full spectral resolution” (FSR) mode, with 0.625 <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> resolution in all bands <xref ref-type="bibr" rid="bib1.bibx69" id="paren.57"/>. The NASA FSR level 1B product begins a year later (December 2015) after additional upgrades to CrIS calibration in November 2015. Our work uses the MUSES algorithm (Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>), which uses radiances from multiple CrIS bands to retrieve atmospheric trace gases and temperature. Currently, this requires the full spectral resolution product, thus we limit ourselves to CrIS data from December 2015 on.</p>
      <p id="d2e1009"><xref ref-type="bibr" rid="bib1.bibx51" id="text.58"/> validated the CrIS PANs retrievals against PAN measurements taken during the ATom campaign. The measured profiles had GEOS-Chem profiles appended to the top. From the standard deviation of the differences between CrIS and aircraft free tropospheric PAN column averages, <xref ref-type="bibr" rid="bib1.bibx51" id="text.59"/> derived a single sounding uncertainty of 0.08 <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> for the CrIS PANs retrieval. This was larger than the uncertainty calculated by the MUSES optimal estimation (OE) algorithm, but <xref ref-type="bibr" rid="bib1.bibx51" id="text.60"/> attribute the discrepancy to pseudo-random error contributions from the retrieval of interfering species or the temperature profile. Such interferent-driven error was not included in the uncertainty calculated by the MUSES algorithm, as for PAN retrievals, the algorithm calculates uncertainty from noise only.</p>
      <p id="d2e1028">Further, the comparison with ATom found a negative bias (CrIS lower than aircraft) that correlated with the total column amount of water vapor. The relationship between water vapor and the CrIS PAN bias was further corroborated by examination of the pre-PAN retrieval spectral residuals, which found a positive residual correlated with water vapor column amounts. From the ATom comparisons, <xref ref-type="bibr" rid="bib1.bibx51" id="text.61"/> derived a bias correction for the CrIS PAN product, <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mi>c</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.035</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">23</mml:mn></mml:mrow></mml:msup><mml:mo>×</mml:mo><mml:mi>X</mml:mi></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M53" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> is the column density of water vapor in <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace linebreak="nobreak" width="0.25em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M55" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> is the correction in <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>MUSES Retrieval</title>
      <p id="d2e1114">The MUSES retrieval <xref ref-type="bibr" rid="bib1.bibx81 bib1.bibx36 bib1.bibx24 bib1.bibx82 bib1.bibx38" id="paren.62"/> is an optimal estimation retrieval with heritage tracing back to the TES retrieval <xref ref-type="bibr" rid="bib1.bibx12" id="paren.63"/>. It is instrument-agnostic, able to solve for the optimal state vector given radiances from a variety of instruments (e.g., AIRS, CrIS, the Ozone Monitoring Instrument (OMI), and the TROPOspheric Monitoring Instrument (TROPOMI)), or multiple instruments (e.g., AIRS <inline-formula><mml:math id="M57" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> OMI, CrIS <inline-formula><mml:math id="M58" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> TROPOMI).</p>
      <p id="d2e1137">The MUSES algorithm allows retrievals to be broken down into smaller steps, each of which define the spectral windows for which to minimize the radiance residuals, the atmospheric parameters to solve for, which of those parameters to update for the next step, along with a number of more technical options. The steps are defined in a “strategy table” which can be quickly edited to test different retrieval approaches. This step-wise design provides flexibility to fix some elements of the state vector while updating others in certain steps, which is particularly useful when retrieving state vector elements with large differences in the magnitude of their Jacobian matrices (e.g., atmospheric temperature vs. PAN) or which interfere with each other (e.g., <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. PAN). These steps are run sequentially; the final state of one step becomes the initial state for the next, save for any state vector elements which the strategy table indicates should not be updated.</p>
      <p id="d2e1151">Within each step, MUSES uses an iterative solver that applies the trust-region Levenberg–Marquardt scheme <xref ref-type="bibr" rid="bib1.bibx12" id="paren.64"/> to mimimize a cost function

            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M60" display="block"><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mi>J</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>[</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>)</mml:mo><mml:msup><mml:mo>]</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>[</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>)</mml:mo><mml:mo>]</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

          where <list list-type="bullet"><list-item>
      <p id="d2e1281"><inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> is the retrieved state vector,</p></list-item><list-item>
      <p id="d2e1291"><inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the a priori state vector,</p></list-item><list-item>
      <p id="d2e1305"><inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula> is the observation vector (i.e., AIRS or CrIS radiances),</p></list-item><list-item>
      <p id="d2e1315"><inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="bold-italic">F</mml:mi></mml:math></inline-formula> is the forward model that simulates radiances given the state vector and fixed parameters (<inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="bold-italic">b</mml:mi></mml:math></inline-formula>),</p></list-item><list-item>
      <p id="d2e1332"><inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="italic">ϵ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the error covariance matrix for the observed radiance, and</p></list-item><list-item>
      <p id="d2e1346"><inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the prior error covariance matrix.</p></list-item></list></p>
      <p id="d2e1359">The Levenberg–Marquardt solver will iteratively update the state vector, <inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> along a direction in state space expected to mimimize Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>). It will continue until the convergence criteria are satisfied or the maximum number of iterations is reached.</p>
      <p id="d2e1372">An important distinction within MUSES is the difference between the a priori (or constraint) state vector and the initial state vector. The former is <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) and is a mathematical constraint on the optimal state vector, the latter is the starting point of <inline-formula><mml:math id="M70" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> before the first iteration of the Levenberg–Marquardt solver. This distinction is important within MUSES because it is a multi-step retrieval. The strategy table, mentioned above, defines which elements of the state vector will be retrieved in each step and whether or not the retrieved state for step <inline-formula><mml:math id="M71" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> becomes the initial state for step <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>. For example, the retrieval may begin with an <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> profile taken from a meteorological reanalysis as both the initial guess and the a priori constraint. An early step in the retrieval can then retrieve a new <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> profile which is more consistent with the observed radiances. This new <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> profile can then be used as an initial state for later steps (whether or not those steps retrieve <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>). This can be important for weak absorbers, such as PAN, which need the profiles of strong thermal IR absorbers to be accurate for the scene in question so that the relatively small absorption feature of the weak absorber can be identified. We note that, for a given step, the initial state and a priori constraint can be the same but do not need to be. For later steps of the retrieval, the initial state may have been set by earlier retrieval steps (as in the example given with <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>) but the a priori constraint will remain the same for all steps. Or, the a priori constraint may be chosen to be a relatively simple profile to avoid imposing undue assumptions, while the initial state may be chosen to reflect a better estimate of the atmospheric state in that location to attempt to minimize the number of steps needed by the solver.</p>
      <p id="d2e1480">MUSES can use different radiative transfer models for <inline-formula><mml:math id="M78" display="inline"><mml:mi mathvariant="bold-italic">F</mml:mi></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>). For this work, we use version 1.2 of the Optimal Spectral Sampling (OSS) model <xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx41" id="paren.65"/>. OSS is designed to use an optimal set of absorption coefficients (per absorbing species and vertical layers) and weights that can be used to compute the radiance for each channel of a spectrometer very efficiently, given the amounts of each absorbing species. These weights are computed by training OSS against a reference line-by-line spectroscopic model. Determining those optimal absorption coefficients and weights requires it to be trained for a given instrument. In version 1.2, the absorption coefficients are calculated from the Line By Line Radiative Transfer Model (LBLRTM) version 12.4 <xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx4" id="paren.66"/>. This allows OSS to efficiently simulate the radiances a specific instrument would observe by reducing the number of monochromatic wavelengths that must be modeled for a given instrument channel, but means that OSS must be trained for each instrument used in a retrieval separately. For details on the approach, readers are encouraged to review <xref ref-type="bibr" rid="bib1.bibx40" id="text.67"/> and <xref ref-type="bibr" rid="bib1.bibx41" id="text.68"/>.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>TROPESS products</title>
      <p id="d2e1513">The TROPESS project focuses on applying the MUSES algorithm to retrieve a range of atmospheric trace gases from a variety of space-based instruments, including AIRS, OMI, CrIS, and TROPOMI to date. Operational processing for TROPESS is set up to accommodate two distinct goals. The first is to provide a global record of ozone and related trace gases for the first <inline-formula><mml:math id="M79" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 years of the 21st century. The second is to support rapid iteration on and improvement of the underlying level 2 algorithms while processing more recent data. Due to the computational cost of these retrievals, meeting both goals requires two separate data streams.</p>
      <p id="d2e1523">The first is a “retrospective” or “reanalysis” stream that retrieves trace gas amounts from <inline-formula><mml:math id="M80" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2002 through <inline-formula><mml:math id="M81" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2021. This stream is processed with a version of the MUSES algorithm frozen at the time the retrospective processing began. The second is a “forward” stream that processes new radiances as they become available with the latest version of the MUSES algorithm, including updates to the algorithm made after the retrospective processing began. The forward stream serves the dual purpose of monitoring significant events affecting air quality and serving as a test bed for improvements to the MUSES algorithm. Due to the difference in the algorithm versions, users must take care not to misinterpret changes in trends between the two streams.</p>
      <p id="d2e1540">Both streams use a “global survey” sampling approach to process a subset of all available soundings yet provide global coverage, which allows a balance between computational cost and spatial coverage. The default survey strategy processes one sounding in each <inline-formula><mml:math id="M82" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>° <inline-formula><mml:math id="M83" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M84" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>° box over land and one out of every four such boxes over ocean. For the current products, <inline-formula><mml:math id="M85" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> is either 0.7 or 0.8°. In addition, TROPESS produces special collections with full data density for high interest events (e.g., the 2019–2020 Australian Bush Fires and 2020 US West Coast Fires) and a set of megacities around the world.</p>
      <p id="d2e1571">The CrIS PAN product described in <xref ref-type="bibr" rid="bib1.bibx51" id="text.69"/> and Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/>, with mostly minor updates, is now routinely produced as part of both the reanalysis <xref ref-type="bibr" rid="bib1.bibx11" id="paren.70"/> and forward <xref ref-type="bibr" rid="bib1.bibx10" id="paren.71"/> TROPESS streams, as well as special products. The reanalysis and forward streams provide twice daily (day and night) global coverage of PAN, using the global survey strategy described in the previous paragraph. Other species retrieved within the TROPESS project include methane, carbon monoxide, deuterated water (HDO), ammonia, and ozone.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>AIRS PAN retrieval development</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>AIRS PAN retrieval design: microwindows and retrieval order</title>
      <p id="d2e1601">Retrievals using AIRS radiances have previously been implemented within the TROPESS MUSES algorithm (§ <xref ref-type="sec" rid="Ch1.S2.SS3"/>), thus the AIRS PAN retrieval can use the existing readers and MUSES OE framework.  The components that must be added are (1) the desired windows, (2) the strategy table that instructs the MUSES algorithm to retrieve PAN, and (3) details about PAN retrievals copied from the CrIS PAN retrievals, such as the prior vector values.</p>

      <fig id="F1" specific-use="star"><label>Figure 1</label><caption><p id="d2e1608">An illustration of the factors driving the selection of windows for the AIRS PAN retrieval. Each panel shows the simulated difference in brightness temperature for a 10 % increase in the mixing ratio of one species at all altitudes as the black line. The AIRS channels are marked at the top of each panel as gray dots. The chosen windows for the AIRS retrieval are the full height blue boxes. For reference, the CrIS windows used by <xref ref-type="bibr" rid="bib1.bibx51" id="text.72"/> are the short, orange boxes.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f01.png"/>

        </fig>

      <p id="d2e1620">For the existing CrIS PAN retrieval, <xref ref-type="bibr" rid="bib1.bibx51" id="text.73"/> chose two windows on the low frequency side of the PAN spectral feature (Fig. <xref ref-type="fig" rid="F1"/>).  However, parts of these windows fall in the AIRS “spectral gap,” where no radiance channels are available.  Thus, we had to compromise between windows that will see sufficient signal for PAN absorption and windows that avoid signal from interfering species. Figure <xref ref-type="fig" rid="F1"/> shows the selected windows overlaid on simulated absorption features for the relevant species in this spectral range. The two windows on the left of the PAN feature (below 785 <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) only see a weak part of the signal from PAN, but are outside of the <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> absorption.  The center window at 795 <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is able to capture the core PAN absorption, but has interference from both water and <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.  The two rightmost microwindows (above 800 <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) are able to avoid interference from water, but have minor to moderate interference from <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is not retrieved (Table <xref ref-type="table" rid="T3"/>) but is simulated in the radiative transfer as an interferent, using climatological profiles scaled by yearly scale factors derived from ground based observations. The base climatological profiles vary with latitude and longitude in 30 and 60° bins, respectively, and were developed from MOZART model output <xref ref-type="bibr" rid="bib1.bibx13" id="paren.74"/>.</p>
      <p id="d2e1724">Early tests with the three windows above 790 <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> showed that omitting the 795 <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> window gave erroneously high PAN column average values across much of the western United States during a period when the Pole Creek Fire was emitting PAN <xref ref-type="bibr" rid="bib1.bibx32" id="paren.75"><named-content content-type="pre">among other species,</named-content></xref>.  Similar tests also showed no benefit to adding additional microwindows above 805 <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The two microwindows below 785 <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> were added later to provide the retrieval with some radiance information with PAN but not <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CCl</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> absorption.  The specific frequency ranges for each microwindow are given in Table <xref ref-type="table" rid="T2"/>.</p>

<table-wrap id="T2"><label>Table 2</label><caption><p id="d2e1805">The microwindows selected for the AIRS PAN retrieval.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Window number</oasis:entry>
         <oasis:entry colname="col2">Freq. range (<inline-formula><mml:math id="M98" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">1</oasis:entry>
         <oasis:entry colname="col2">772.5 to 775</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">2</oasis:entry>
         <oasis:entry colname="col2">780 to 781.875</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">3</oasis:entry>
         <oasis:entry colname="col2">793.75 to 796.875</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">4</oasis:entry>
         <oasis:entry colname="col2">800 to 802.5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">5</oasis:entry>
         <oasis:entry colname="col2">804.375 to 805</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<table-wrap id="T3" specific-use="star"><label>Table 3</label><caption><p id="d2e1894">The retrieval steps in the strategy table for this AIRS PAN retrieval. Retrieved elements annotated with a <sup>∗</sup> are only included over land.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="33mm"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="52mm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="52mm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Step num.</oasis:entry>
         <oasis:entry colname="col2" align="left">Step name</oasis:entry>
         <oasis:entry colname="col3" align="left">Retrieved elements</oasis:entry>
         <oasis:entry colname="col4" align="left">Comment</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">1</oasis:entry>
         <oasis:entry colname="col2" align="left">Brightness temperature check</oasis:entry>
         <oasis:entry colname="col3" align="left">–</oasis:entry>
         <oasis:entry colname="col4" align="left">Initial check to determine whether to run step 2, 3, or neither</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">2</oasis:entry>
         <oasis:entry colname="col2" align="left">Cloud properties</oasis:entry>
         <oasis:entry colname="col3" align="left">Cloud extent, cloud pressure</oasis:entry>
         <oasis:entry colname="col4" align="left">Optional, depends on step 1</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">3</oasis:entry>
         <oasis:entry colname="col2" align="left">Surface temperature</oasis:entry>
         <oasis:entry colname="col3" align="left">Surface temperature</oasis:entry>
         <oasis:entry colname="col4" align="left">Optional, depends on step 1</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">4</oasis:entry>
         <oasis:entry colname="col2" align="left">Strong features</oasis:entry>
         <oasis:entry colname="col3" align="left">Atm. temp., surf. temp., <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, HDO, <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, cld. extent, cld. pres., surf. emissivity<sup>∗</sup></oasis:entry>
         <oasis:entry colname="col4" align="left"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">5</oasis:entry>
         <oasis:entry colname="col2" align="left">Model residual check</oasis:entry>
         <oasis:entry colname="col3" align="left">–</oasis:entry>
         <oasis:entry colname="col4" align="left">This step does not update any values, it provides pre-PAN residuals useful for future development and filtering</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">6</oasis:entry>
         <oasis:entry colname="col2" align="left">PAN</oasis:entry>
         <oasis:entry colname="col3" align="left">PAN</oasis:entry>
         <oasis:entry colname="col4" align="left"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">7</oasis:entry>
         <oasis:entry colname="col2" align="left"><inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> update</oasis:entry>
         <oasis:entry colname="col3" align="left">Surf. temp., <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, cld. extent, cld. pres., surf. emissivity<sup>∗</sup></oasis:entry>
         <oasis:entry colname="col4" align="left"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">8</oasis:entry>
         <oasis:entry colname="col2" align="left">Surface refinement</oasis:entry>
         <oasis:entry colname="col3" align="left">Surf. temp., cld. extent, cld. pres., surf. emissivity<sup>∗</sup></oasis:entry>
         <oasis:entry colname="col4" align="left">This step gives a chance to refine surface temperature/emissivity<sup>∗</sup>/cloud properties before retrieving <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">9</oasis:entry>
         <oasis:entry colname="col2" align="left"><inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3" align="left"><inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4" align="left"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">10</oasis:entry>
         <oasis:entry colname="col2" align="left"><inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3" align="left"><inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, surf. temp., cld. extent, surf. emissivity<sup>∗</sup></oasis:entry>
         <oasis:entry colname="col4" align="left"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e2253">Development of the strategy table was straightforward, requiring only the addition of a PAN retrieval step to the standard AIRS strategy table in use by TROPESS to generate AIRS products. Table <xref ref-type="table" rid="T3"/> enumerates the steps included in this table; the PAN step added is step number 6. The choice to place the PAN retrieval immediately following the “strong features” step (no. 4) follows <xref ref-type="bibr" rid="bib1.bibx51" id="text.76"/>. Step number 5 was also added to enable saving of spectral residuals in a wider range of frequencies centered on the PAN feature. Such a diagnostic is helpful to understand what factors might be affecting a given retrieval and proved valuable for filtering (Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>).</p>

      <fig id="F2" specific-use="star"><label>Figure 2</label><caption><p id="d2e2266">The different sets of PAN mole fraction profiles used as a priori constraints in the MUSES retrieval. Each panel represents a profile type, selected within MUSES based on the sounding location. Within each panel, the variation with month is shown by the differently colored profiles.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f02.png"/>

        </fig>

      <p id="d2e2275">The a priori constraints used in the AIRS PANs retrieval are mostly the same as the <xref ref-type="bibr" rid="bib1.bibx51" id="text.77"/> CrIS PANs retrieval, with the exception of surface emissivity. As in <xref ref-type="bibr" rid="bib1.bibx51" id="text.78"/>, the PAN profile used as the a priori constraint for each sounding is selected from a set of 6 climatological profiles for each month (Fig. <xref ref-type="fig" rid="F2"/>) and the initial PAN profile used as the starting point for the nonlinear optimization is a flat 0.3 <inline-formula><mml:math id="M117" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> in the troposphere. Likewise, the a priori covariance for the PAN VMRs is the same as in <xref ref-type="bibr" rid="bib1.bibx51" id="text.79"/>. These constraints derive from those used in the retrieval of PAN from the Tropospheric Emissions Spectrometer <xref ref-type="bibr" rid="bib1.bibx49" id="paren.80"/>. For surface emissivity, we used the Combined ASTER MODIS Emissivity over Land (CAMEL) database <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx20" id="paren.81"/> for our inital and a priori constraint on surface emissivity. <xref ref-type="bibr" rid="bib1.bibx51" id="text.82"/> used the University of Wisconsin Cooperative Institute for Meteorological and Satellite Studies High Spectral Resolution database <xref ref-type="bibr" rid="bib1.bibx8" id="paren.83"/>. Note that all TROPESS products starting from v1.16 now use the CAMEL database; this included the CrIS PAN retrievals we use for comparison in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Addressing cloud interference over ocean</title>
      <p id="d2e2320">During development, we found that low, warm clouds over ocean would be misinterpreted by our AIRS retrieval as PAN. For the cases tested, we were able to filter out such soundings by decomposing the AIRS radiances into empirical orthogonal functions (EOFs) and filtering soundings for which the second principle component (PC) was below a threshold. This section describes that approach.</p>

      <fig id="F3" specific-use="star"><label>Figure 3</label><caption><p id="d2e2325">Column average PAN between 825 and 215 <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula> as retrieved for 11 September 2020 from both CrIS (on the Suomi-NPP satellite, <bold>a</bold>) and AIRS (<bold>b</bold> and <bold>c</bold>). Compared to <bold>(b)</bold>, <bold>(c)</bold> uses a PC-based filter instead of the previous retrieval step's water quality check to filter for cloud impacts. The black box in both panels shows the location of the spurious plume in the AIRS retrievals that is the focus of discussion in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f03.png"/>

        </fig>

      <p id="d2e2360">This issue of certain clouds appearing as PAN in the retrieval can be seen in Fig. <xref ref-type="fig" rid="F3"/>, which shows free tropospheric column averages of PAN (which we will refer to as <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) from 11 September 2020. This was a period with major wildfires throughout the west coast of the United States. In Fig. <xref ref-type="fig" rid="F3"/>a, <inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from CrIS shows a reasonable plume structure, with clear advection of PAN from the fires on the west coast. We also see some of this in the AIRS retrievals – specifically, the enhanced PAN in the southern half of California, most of Arizona, and the northwest corner of Mexico, as well as over the northern Pacific Ocean (Fig. <xref ref-type="fig" rid="F3"/>b).</p>

      <fig id="F4" specific-use="star"><label>Figure 4</label><caption><p id="d2e2394"><bold>(a)</bold> RGB image from the GOES-17 (GOES-West) satellite as captured between 22:11 and 22:13 UTC on 11 September 2020. <bold>(b)</bold> Cloud fraction, <bold>(c)</bold> cloud top pressure, and <bold>(d)</bold> cloud top temperature from the MODIS-Aqua MYD06 product. In all panels, the red or black box encloses the same area as the black boxes in Fig. <xref ref-type="fig" rid="F3"/>.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f04.jpg"/>

        </fig>

      <p id="d2e2416">However, in the black box (20 to 30° N, 142 to 122° W), CrIS shows mostly background column whereas the AIRS retrievals show an enhancement with an unusual structure (not a shape representative of transport from the fires). When we check RGB imagery from the GOES-West Advanced Baseline Imager (<ext-link xlink:href="https://noaa-goes17.s3.amazonaws.com/index.html#ABI-L2-MCMIPC/2020/255/22/">https://noaa-goes17.s3.amazonaws.com/index.html#ABI-L2-MCMIPC/2020/255/22/</ext-link>, last access: 8 December 2022), we clearly see that this “plume” seen by the AIRS PAN retrieval matches the shape of the clouds in that area (Fig. <xref ref-type="fig" rid="F4"/>a). Further, cloud properties from the MODIS-Aqua MYD06 product <xref ref-type="bibr" rid="bib1.bibx39" id="paren.84"/> plotted in Fig. <xref ref-type="fig" rid="F4"/>b–d show that this is a low, warm cloud. This clear spatial correlation between the cloud extent and the spurious PAN plume leads us to conclude that such low, warm clouds cause difficulties for our retrieval with the chosen spectral windows (Table <xref ref-type="table" rid="T2"/>). Similarly, in the plume around 50°N, AIRS sees enhanced <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> further west than CrIS (around 150° W) and more to the northwest of the state of Washington (near 50°N, 125°W). From the cloud properties shown in Fig. <xref ref-type="fig" rid="F4"/>, these are also potential cases of erroneous impact from clouds.</p>
      <p id="d2e2445">The AIRS data shown in Fig. <xref ref-type="fig" rid="F3"/> are those soundings which pass prototype quality flags chosen based on quality flags for other thermal retrievals, including sufficiently small radiance residual, surface temperature <inline-formula><mml:math id="M122" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 265 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:math></inline-formula>, cloud top pressure (as retrieved in our algorithm) below the tropopause, and the quality of the <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> retrieval in step 4 of Table <xref ref-type="table" rid="T3"/>. (Note that these quality flags were for prototyping purposes only, and are not those used in the final product.)</p>

      <fig id="F5" specific-use="star"><label>Figure 5</label><caption><p id="d2e2482">The results of the EOF decomposition on AIRS radiances over a domain covering 20 to 60° N and 150 to 110° W. The top panel shows the spectral signatures of PAN and <inline-formula><mml:math id="M125" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> from Fig. <xref ref-type="fig" rid="F1"/> for references. The remaining three panels show the first, second, and third EOFs, respectively, resulting from the decomposition. The legend in each panel reports the percent of variance explained by that EOF.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f05.png"/>

        </fig>

      <p id="d2e2506">Since these criteria were insufficient to remove the spurious plume, we investigated an approach inspired by <xref ref-type="bibr" rid="bib1.bibx28" id="text.85"/>. As they used an empirical orthogonal function (EOF) decomposition to study dominant patterns of variability in the AIRS data, we tested whether an EOF decomposition could identify the low, warm clouds causing the spurious PAN signal in our AIRS PAN retrieval. We do note that a cloud-clearing approach, like that used in CLIMCAPS <xref ref-type="bibr" rid="bib1.bibx66" id="paren.86"/>, could be one approach to address this issue. Such an approach combines radiances from multiple soundings to yield radiances unimpacted by clouds <xref ref-type="bibr" rid="bib1.bibx67" id="paren.87"><named-content content-type="pre">see Sect. 3 and Fig. 1 of</named-content><named-content content-type="post">for a description of this approach</named-content></xref> . However, the MUSES algorithm is designed to operate on individual soundings. Therefore, we focused our efforts on the EOF decomposition as a way to screen out these cloud-affected soundings.</p>
      <p id="d2e2523">Figure <xref ref-type="fig" rid="F5"/> shows the first three EOFs resulting from a decomposition of the AIRS observed radiances (as stored by the MUSES algorithm in its output radiance files) within the domain covering 20 to 60° N and 150 to 110° W. Keeping in mind that the sign of an EOF is arbitrary, as it can be flipped by changing the sign of the principal component (PC) by which it is multiplied, the first two EOFs contain many features which match up closely in shape to the <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> spectral features shown in the top panel. The third EOF appears to relate to <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, as the dominant feature appears at approximately the same frequency as the <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> feature shown in Fig. <xref ref-type="fig" rid="F1"/>. These EOFs were computed from the window used in step 5 of the strategy table (Table <xref ref-type="table" rid="T3"/>), which spans 760 to 860 <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>

      <fig id="F6" specific-use="star"><label>Figure 6</label><caption><p id="d2e2584">The PC values for EOF 1 (left) and 2 (right) for each AIRS sounding in a domain covering 20 to 60° N and 150 to 110° W. The red box in both panels outlines the same area as the black and red boxes in Figs. <xref ref-type="fig" rid="F3"/> and <xref ref-type="fig" rid="F4"/>.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f06.png"/>

        </fig>

      <p id="d2e2597">For each AIRS sounding, the observed radiances can be represented as the linear combination of the EOFs with the PCs as the coefficients. Figure <xref ref-type="fig" rid="F6"/> shows the values of the PCs for the first two EOFs needed to reconstruct the AIRS radiances for all the soundings in this domain. The second PC (Fig. <xref ref-type="fig" rid="F6"/>, right panel) has a spatial pattern of negative values strikingly similar to the clouds seen in Fig. <xref ref-type="fig" rid="F4"/>. In Fig. <xref ref-type="fig" rid="F3"/>c, we show the AIRS <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> with a filter based on the values of PC 2 applied. Filtering out soundings with PC 2 <inline-formula><mml:math id="M131" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0 removes the spurious <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

      <fig id="F7" specific-use="star"><label>Figure 7</label><caption><p id="d2e2640"><bold>(a)</bold> <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from the CrIS instrument on 1 January 2020 over New Zealand. <bold>(b)</bold> <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from AIRS over the same region as <bold>(a)</bold>, with parametric filtering, including a check of the quality of the water retrieval from a previous retrieval step applied. <bold>(c)</bold> As <bold>(b)</bold>, but with the PC-based filter applied instead of the previous step's water quality check. <bold>(d)</bold> MODIS-Aqua cloud fraction, <bold>(e)</bold> cloud top pressure, and <bold>(f)</bold> cloud top temperature over the same region as <bold>(b)</bold>. In all panels, the black or red box highlights an area with low, warm clouds.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f07.png"/>

        </fig>

      <p id="d2e2698">As a next step, we applied this PC-based filtering to different region. We chose a PAN plume from the Australian Bush Fires in late 2019/early 2020. For this Australian fire case, we also see a collection of soundings with large <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values in the AIRS data but not the CrIS data, marked by the black box in Fig. <xref ref-type="fig" rid="F7"/>a and b. The MODIS cloud properties (Fig. <xref ref-type="fig" rid="F7"/>d–f) confirm that this is again a low, warm cloud. When we apply the PC-based filter, it correctly marks these soundings as bad quality and removes them (Fig. <xref ref-type="fig" rid="F7"/>c).</p>

      <fig id="F8" specific-use="star"><label>Figure 8</label><caption><p id="d2e2721"><bold>(a)</bold> <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from the CrIS instrument on 11 September 2020 over the Amazon. <bold>(b)</bold> <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from AIRS over the same region as <bold>(a)</bold> without the PC-based filter applied.<bold>(c)</bold> MODIS-Aqua cloud fraction, <bold>(d)</bold> cloud top pressure, and <bold>(e)</bold> cloud top temperature over the same region as <bold>(a)</bold>. In all panels, the black or red box highlights an area where MODIS-Aqua observed mostly low, warm clouds.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f08.png"/>

        </fig>

      <p id="d2e2773">Fortunately, it appears that soundings over land are not as susceptible to this issue with low, warm clouds. Figure <xref ref-type="fig" rid="F8"/> shows <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from both CrIS and AIRS again along with MODIS-Aqua cloud properties, this time over the Amazon. While the AIRS <inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="F8"/>b) shows sporadic high values compared to CrIS (Fig. <xref ref-type="fig" rid="F8"/>a), these erroneous high values appear to be random, rather than systematically located where the low, warm clouds are. In particular, the western swath shows mostly low <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values despite the presence of low, warm clouds. Therefore, we apply the PC-based filter only to ocean soundings.</p>
      <p id="d2e2816">Our hypothesis is that the reason the AIRS retrieval is affected by the low, warm clouds and CrIS is not is due either the difference in spectral windows used between the retrievals (Fig. <xref ref-type="fig" rid="F1"/>), the difference in radiance noise between the instruments, or a combination of the two. Further, our hypothesis for why land soundings are much less impacted than ocean soundings is that it is more difficult to distinguish a low, warm cloud from an underlying ocean surface than a land surface.</p>
      <p id="d2e2821">While the PC-based filter was successful in these cases, we note that it may need additional adjustment in the future. During testing, we found that filtering out soundings with PC 2 <inline-formula><mml:math id="M141" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M142" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10 was sufficient for the US West Coast Fires case (Fig. <xref ref-type="fig" rid="F3"/>), but not the Australian Bush Fires case (Fig. <xref ref-type="fig" rid="F7"/>), whereas requiring PC 2 <inline-formula><mml:math id="M143" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0 worked for both. Future work will examine whether the criterion of PC 2 <inline-formula><mml:math id="M144" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0 is sufficient globally, or if further refinement is necessary.</p>
      <p id="d2e2857">We also note that it was necessary to use the 760 to 860 <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> window, rather than the narrower windows used in the PAN retrieval step (Table <xref ref-type="table" rid="T2"/>). When we tested the latter, this PC-based filter was not effective in the Australian fires case. Therefore, we conclude that information available in the wider window provides the necessary data for the EOFs to correctly fit clouds.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Filtering and validation through comparison with CrIS</title>
      <p id="d2e2884">While the PC-based filter addresses the issue of interference from low, warm clouds (Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>), it is not sufficient by itself as a quality filter. Ideally, quality filters would be derived by comparing the satellite product to in situ data and checking that the filters ensure good agreement between the satellite and in situ data. To this end, <xref ref-type="bibr" rid="bib1.bibx51" id="text.88"/> used aircraft profiles from the ATom campaign to validate the CrIS PAN product. This was ideal for CrIS, as the ATom flights provided profiles of PAN over the majority of the troposphere. However, the majority of the ATom profiles are over ocean <xref ref-type="bibr" rid="bib1.bibx51" id="paren.89"><named-content content-type="pre">see Fig. 1 of</named-content></xref>, and this is also true for HIPPO, a similar campaign that occurred before the start of the CrIS FSR product <xref ref-type="bibr" rid="bib1.bibx51" id="paren.90"><named-content content-type="pre">and so not be used by</named-content></xref>. As we will lose any profile comparisons that occur over ocean clouds, this would likely limit the number of comparisons we can draw from HIPPO and ATom. To add to the challenge, from Fig. <xref ref-type="fig" rid="F3"/>, we can see that outside of strong PAN plumes from, e.g., fires, the single sounding retrievals over land from AIRS have significant sounding-to-sounding noise, indicating that bulk statistics will be necessary for a meaningful comparison.</p>
      <p id="d2e2904">Thus, instead of relying on aircraft data directly, we decided to use the existing CrIS PAN product as a transfer standard by designing a quality filter that predicts whether the AIRS <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value will be within a given threshold of the nearest CrIS <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value. This provides the large number of soundings needed for bulk statistics and implicitly makes the AIRS PAN product consistent with the CrIS PAN product, which can allow users to combine the two.</p>
      <p id="d2e2929">We chose to implement this quality filter using decision trees, with the Scikit Learn package <xref ref-type="bibr" rid="bib1.bibx52" id="paren.91"/>. Using simple decision trees allowed us to investigate what variables were used to classify a sounding as good or bad quality during development. Using decision trees rather than hand-tuned quality filter parameters allowed faster iteration and should, in principle, be more reproducible. Because we saw in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/> that ocean soundings required different filtering for clouds than land soundings, we also tested whether using a single decision tree for all soundings or separate decision trees for land and ocean soundings gave better results. We found that separate decision trees for land and ocean soundings retained more soundings with significant <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and that there was little difference in the correlation between AIRS and CrIS <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> using separate land/ocean trees or a single tree. Therefore, we chose to use separate decision trees. Appendix <xref ref-type="sec" rid="App1.Ch1.S3"/> shows a subset of results using a single decision tree, and describes the trade offs between using a single decision tree and separate decision trees.</p>

<table-wrap id="T4" specific-use="star"><label>Table 4</label><caption><p id="d2e2965">Regions and dates used for the quality filter decision tree training and testing. A – in the “Training date” column indicates that no data from that region was used in training.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Region name</oasis:entry>
         <oasis:entry colname="col2">Training date</oasis:entry>
         <oasis:entry colname="col3">Testing date</oasis:entry>
         <oasis:entry colname="col4">Latitude bounds</oasis:entry>
         <oasis:entry colname="col5">Longitude bounds</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Australia/NZ</oasis:entry>
         <oasis:entry colname="col2">1 Jan 2020</oasis:entry>
         <oasis:entry colname="col3">5 Jan 2020</oasis:entry>
         <oasis:entry colname="col4">60 to 20° S</oasis:entry>
         <oasis:entry colname="col5">150 to 177.5° E</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">US West Coast</oasis:entry>
         <oasis:entry colname="col2">13 Sep 2020</oasis:entry>
         <oasis:entry colname="col3">11 Sep 2020</oasis:entry>
         <oasis:entry colname="col4">20 to 60° N</oasis:entry>
         <oasis:entry colname="col5">150 to 110° W</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Amazon</oasis:entry>
         <oasis:entry colname="col2">–</oasis:entry>
         <oasis:entry colname="col3">11 Sep 2020</oasis:entry>
         <oasis:entry colname="col4">25° S to 10° N</oasis:entry>
         <oasis:entry colname="col5">80 to 40° W</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Africa</oasis:entry>
         <oasis:entry colname="col2">–</oasis:entry>
         <oasis:entry colname="col3">11 Sep 2020</oasis:entry>
         <oasis:entry colname="col4">30° S to 5° N</oasis:entry>
         <oasis:entry colname="col5">5 to 45° E</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e3080">The decision trees were trained on AIRS and CrIS retrievals for one <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">day</mml:mi></mml:mrow></mml:math></inline-formula> from each of the 2019/2020 Australian Bush Fires and 2020 US West Coast Fires. Ocean soundings that failed the PC-based filter (Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>) were excluded from training. Two different days from these fires, plus retrievals over the Amazon and Africa were used for testing (Table <xref ref-type="table" rid="T4"/>). The data was divided into training and testing by days and regions rather than a random <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mn mathvariant="normal">70</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> or similar stochastic split to ensure that the training data included at least some soundings with significant <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. Since plumes with significant <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are outnumbered by background soundings, we were concerned that a fully random split would miss the plume soundings.</p>

<table-wrap id="T5" specific-use="star"><label>Table 5</label><caption><p id="d2e3133">Input variables for the quality filter decision trees. Note that “<inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> quality” is not useful as <inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is retrieved after PAN (see Table <xref ref-type="table" rid="T3"/>) but is included because it is a standard quality variable in the MUSES algorithm.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Short name</oasis:entry>
         <oasis:entry colname="col2">Description</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Rad. resid. mean</oasis:entry>
         <oasis:entry colname="col2">Post-PAN retrieval mean of noise-normalized radiance residuals</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Rad. resid. std. dev.</oasis:entry>
         <oasis:entry colname="col2">Post-PAN retrieval standard deviation of noise-normalized radiance residuals</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Res. Norm. Init.</oasis:entry>
         <oasis:entry colname="col2">Quadrature sum of pre-PAN retrieval residual mean and standard deviation</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Res. Norm. Final</oasis:entry>
         <oasis:entry colname="col2">Quadrature sum of post-PAN retrieval residual mean and standard deviation</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Rad. Max. SNR</oasis:entry>
         <oasis:entry colname="col2">Maximum ratio of radiance to noise</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mi>K</mml:mi><mml:mo>⋅</mml:mo><mml:mi>d</mml:mi><mml:mi>L</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Jacobian dotted with radiance residuals</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:mo>⋅</mml:mo><mml:mi>d</mml:mi><mml:mi>L</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Radiances dotted with radiance residuals</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cld. pres.</oasis:entry>
         <oasis:entry colname="col2">Cloud pressure</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cld. OD mean</oasis:entry>
         <oasis:entry colname="col2">Mean cloud optical depth between 975 and 1200 <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Cld. OD var.</oasis:entry>
         <oasis:entry colname="col2">Standard deviation of cloud optical depth between 975 and 1200 <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mean surf. emis.</oasis:entry>
         <oasis:entry colname="col2">Mean difference between retrieved and a priori surface emissivity</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Desert emis.</oasis:entry>
         <oasis:entry colname="col2">Value of retrieved surface emissivity nearest 1025 <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> self corr.</oasis:entry>
         <oasis:entry colname="col2">Consistency between <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> retrieved in two different steps</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Atm. T quality</oasis:entry>
         <oasis:entry colname="col2">Quality flag for retrieved atmospheric temperature</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M163" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> quality</oasis:entry>
         <oasis:entry colname="col2">Quality flag for retrieved <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> quality</oasis:entry>
         <oasis:entry colname="col2">Quality flag for retrieved <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> profile from step 4 (Table <xref ref-type="table" rid="T3"/>)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e3466">As inputs, the decision trees received 16 values commonly used by existing MUSES retrievals as quality metrics, listed in Table <xref ref-type="table" rid="T5"/>. It was trained to predict a binary flag indicating whether the AIRS <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was within 0.2 <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> or 50 % of the CrIS <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from the CrIS sounding closest to it (by great circle distance). The CrIS soundings are restricted to those that pass basic quality flagging for modeled vs. observed radiance and a check for certain surface features that can cause erroneous retrievals. The CrIS <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value compared against includes an averaging kernel adjustment to accommodate different vertical sensitivity between CrIS and AIRS. (see Fig. <xref ref-type="fig" rid="F15"/> for a summary of typical CrIS and AIRS <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> column averaging kernels.) Specifically, following Eq. (25) of <xref ref-type="bibr" rid="bib1.bibx58" id="text.92"/>,

            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M172" display="block"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi>c</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:mtext>CrIS</mml:mtext><mml:mo>,</mml:mo><mml:mtext>comp</mml:mtext></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi mathvariant="normal">a</mml:mi><mml:mo>,</mml:mo><mml:mtext>AIRS</mml:mtext></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">a</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mtext>CrIS</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi mathvariant="normal">a</mml:mi><mml:mo>,</mml:mo><mml:mtext>AIRS</mml:mtext></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula>

          where <list list-type="bullet"><list-item>
      <p id="d2e3593"><inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mi mathvariant="normal">a</mml:mi><mml:mo>,</mml:mo><mml:mtext>AIRS</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the a priori <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from AIRS,</p></list-item><list-item>
      <p id="d2e3623"><inline-formula><mml:math id="M175" display="inline"><mml:mi mathvariant="bold-italic">a</mml:mi></mml:math></inline-formula> is the AIRS pressure-weighted column averaging kernel (i.e., one that includes the integration operator),</p></list-item><list-item>
      <p id="d2e3633"><inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mtext>CrIS</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the CrIS posterior PAN profile,</p></list-item><list-item>
      <p id="d2e3650"><inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi mathvariant="normal">a</mml:mi><mml:mo>,</mml:mo><mml:mtext>AIRS</mml:mtext></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the AIRS prior PAN profile.</p></list-item></list></p>
      <p id="d2e3668">Note that the CrIS <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is not an input to the decision trees; it is used only in training. This permits the decision trees to be applied to AIRS soundings without a coincidence CrIS sounding.</p>
      <p id="d2e3683">Typically, it is important to “prune” decision trees <xref ref-type="bibr" rid="bib1.bibx18" id="paren.93"/> by limiting the number of decision nodes it can include in order to prevent overfitting to the training data. We tested pruning by limiting both the maximum depth (i.e., the number of nodes along any one path) and maximum number of leaf nodes (i.e., the number of end points for the model). However, we found that either method of pruning the decision trees caused the filter to screen out soundings with enhanced <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. Our hypothesis is that, because these soundings are still in the minority of all soundings in the training data, limiting the decision tree's size gave it too little flexibility to account for these somewhat uncommon cases. That is, because soundings with enhanced <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are in the minority, a model limited in size lacked the flexibility to develop useful rules for these soundings, and instead was able to achieve better accuracy by simply classifying all such soundings as bad quality. Therefore, we proceed without limiting the model size.</p>

      <fig id="F9" specific-use="star"><label>Figure 9</label><caption><p id="d2e3713"><bold>(a)</bold> <inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from CrIS on 11 September 2020 over Africa. <bold>(b)</bold> Surface emissivity at 1025 <inline-formula><mml:math id="M182" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. <bold>(c)</bold> <inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from AIRS with only the decision tree-based  filter applied. <bold>(d)</bold> Like <bold>(c)</bold>, but with the emissivity- and PC- based filters added to the decition tree-based filter. The red or black box in each panel indicates an area with the silicate feature known to bias our PAN retrievals.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f09.png"/>

        </fig>

      <p id="d2e3773">Additionally, we include an explicit check that the retrieved surface emissivity at 1025 <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is <inline-formula><mml:math id="M185" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.94. This filter is similar to one used in <xref ref-type="bibr" rid="bib1.bibx51" id="text.94"/> to remove soundings impacted by a silicate feature that produces a surface emissivity with a similar spectral shape to PAN. The same silicate feature also shows up as a low emissivity near 1025 <inline-formula><mml:math id="M186" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (see Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>). Although the decision trees are trained on this value as an input, it still retains some soundings clearly affected by the silicate feature. Figure <xref ref-type="fig" rid="F9"/> shows CrIS <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Fig. <xref ref-type="fig" rid="F9"/>a, AIRS <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Fig. <xref ref-type="fig" rid="F9"/>c and d, and the emissivity value in Fig. <xref ref-type="fig" rid="F9"/>b. The red or black box identifies a region with low 1025 <inline-formula><mml:math id="M189" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> emissivity values that has very high <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values in the AIRS retrieval in Fig. <xref ref-type="fig" rid="F9"/>c. When we add an explicit filter on the 1025 <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> emissivity, those few remaining soundings are removed.</p>

      <fig id="F10" specific-use="star"><label>Figure 10</label><caption><p id="d2e3891"><bold>(a)</bold> AIRS <inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> data from the Australian Bush Fires on 5 January 2020 with no filtering applied. <bold>(b)</bold> As <bold>(a)</bold>, with the PC-based filter applied. <bold>(c)</bold> As <bold>(a)</bold>, with the PC- and emissivity- based filters applied. <bold>(d)</bold> As <bold>(a)</bold>, with the PC-based, emissivity-based, and decision tree-based filters applied. <bold>(e–h)</bold> show the same filtering progression, but for 11 September 2020 over the US West Coast Fires.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f10.png"/>

        </fig>

      <p id="d2e3935">The final quality filter will be a combination of the PC-based filter from Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>, the emissivity-based filter, and the decision tree-based filter. Figure <xref ref-type="fig" rid="F10"/> shows how each of these filters affects the soundings passed as good quality for two days with clear PAN plumes. As discussed in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>, the PC-based filter is applied only to ocean soundings, where clouds cause a high bias in <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. For these two scenes, the emissivity filter has a modest impact, removing some soundings in southern California, northeastern Arizona, and southeastern Utah (Fig. <xref ref-type="fig" rid="F10"/>g). In both scenes, the decision tree-based filter does remove a number of the soundings with large <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values (Fig. <xref ref-type="fig" rid="F10"/>d,h). Therefore, in the public files, we will provide the information for users to adjust the quality flagging to suit their application; specifically the PC value used for flagging, the emissivity value used for flagging, and the binary flag produced by the decision trees.</p>
      <p id="d2e3972">For the rest of this section, we will focus on the performance of the combined filter. Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/> contains a brief exploration of the relationship between the input variables and predicted quality flag.</p>

      <fig id="F11" specific-use="star"><label>Figure 11</label><caption><p id="d2e3979">Maps of <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> retrieved from CrIS (first column) and AIRS (second column) along with <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> total column, also retrieved from AIRS (third column). Each row contains one of the testing region/day pairs from Table <xref ref-type="table" rid="T4"/>. The first and third columns are filtered by the standard TROPESS quality flag; the middle column uses the combined decision tree <inline-formula><mml:math id="M197" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> PC <inline-formula><mml:math id="M198" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> emissivity filter described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f11.png"/>

        </fig>

      <p id="d2e4026">First, we examine the spatial distribution of PAN plumes in our filtered AIRS product versus CrIS. Figure <xref ref-type="fig" rid="F11"/> shows our filtered AIRS PAN data alongside the PAN retrieved from CrIS. The data shown here are from the four testing data region/day pairs in Table <xref ref-type="table" rid="T4"/>; thus, these are data that the decision trees were not trained on. The first two rows show the Australian 2019/2020 Bush Fires and the 2020 US West Coast Fires, respectively. In both cases, we can see that the AIRS PAN product matches the location of enhanced PAN plumes seen in the CrIS data very well. In the US West Coast Fires case, the large <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values in Arizona, central/southern California, and northwestern Mexico are all in the same region where CrIS sees high <inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values. Likewise, in the Australian fires case, AIRS captures the PAN plume approaching New Zealand's northern island, though compared to CrIS, more of the plume is removed by our filtering criteria.</p>
      <p id="d2e4055">The last two rows of Fig. <xref ref-type="fig" rid="F11"/> show a day over the Amazon and central/southern Africa, respectively. These are regions not included in the training data for the decision trees (Table <xref ref-type="table" rid="T4"/>), so these are a good test of whether the filter can generalize to new regions. Neither region has significant PAN plumes in the CrIS data. However, there are small enhancements to <inline-formula><mml:math id="M201" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5 <inline-formula><mml:math id="M202" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> in both cases. In the Amazon, there are also a few soundings with <inline-formula><mml:math id="M203" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M204" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> near 17.5° S, 55° W. AIRS does see this 1 <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> hotspot, though it also retrieves several soundings with <inline-formula><mml:math id="M207" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> further north, where CrIS does not. The Amazon hotspot in western Brazil cannot be seen in AIRS due to the swath gap. The PAN hotspot seen by CrIS in the African test over Angola, Zambia, and the Democratic Republic of the Congo is not as apparent in the AIRS PAN; however, AIRS does appear to capture some enhancement in that area, particularly compared to further north, near the equator.</p>
      <p id="d2e4127">Helpfully, in most of these cases, when there is a strong PAN enhancement in CrIS, AIRS also sees an enhancement in <inline-formula><mml:math id="M209" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>. For example, in the Amazon test case, only the soundings with enhanced PAN at 17.5° S, 55° W also have a strong <inline-formula><mml:math id="M210" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> enhancement; while the false enhancements further north in the AIRS PAN do not. This implies that users looking for PAN plumes in the AIRS data can check for enhanced <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> to distinguish whether a small PAN plume is likely real. This is not a entirely self-sufficient condition, as it is possible to have a PAN plume without enhanced <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula>, but the presence of enhanced <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> can give more confidence in an observed PAN plume. (See Sect. <xref ref-type="sec" rid="Ch1.S4"/> for a summary of recommendations for use.)</p>

      <fig id="F12" specific-use="star"><label>Figure 12</label><caption><p id="d2e4176">Correlation between AIRS <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and CrIS <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> where the latter includes both the AIRS averaging kernel correction from Eq. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) and the <inline-formula><mml:math id="M216" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> bias correction from <xref ref-type="bibr" rid="bib1.bibx51" id="text.95"/>. The different test date/region pairs from Table <xref ref-type="table" rid="T4"/> are represented by the different color series. Each marker represents the daily average of the AIRS and matched CrIS soundings in a box with the size of the marker increasing with the number of soundings in that box. Each box must have a minimum of 10 soundings to be included. The box size is the only difference between panels: <bold>(a)</bold> 1° <inline-formula><mml:math id="M217" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1°, <bold>(b)</bold> 2° <inline-formula><mml:math id="M218" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2°, <bold>(c)</bold> 5° <inline-formula><mml:math id="M219" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5°, and <bold>(d)</bold> 10° <inline-formula><mml:math id="M220" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10°</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f12.png"/>

        </fig>

      <p id="d2e4269">We also tested the correlation between AIRS and CrIS <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> with different amounts of spatial averaging. Figure <xref ref-type="fig" rid="F12"/> shows the results for four different spatial averaging box sizes. While the data from our test cases does have some fire-influenced observations, many of the observations vary primarily from large-scale seasonal or latitudinal variations. At 1° <inline-formula><mml:math id="M222" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1°, the correlation is somewhat weak. The correlation is more significant at 2° <inline-formula><mml:math id="M223" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2°, 5° <inline-formula><mml:math id="M224" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5°, and 10° <inline-formula><mml:math id="M225" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10°. However, averaging to 5° <inline-formula><mml:math id="M226" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5° or 10° <inline-formula><mml:math id="M227" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10° is needed for the root mean squared error (RMSE) between AIRS and CrIS <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values to drop below 0.1 <inline-formula><mml:math id="M229" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> and for the visual correlation (especially for high values) to be apparent. This is a fair amount of averaging, but is not surprising, given the sounding-to-sounding variation seen in Fig. <xref ref-type="fig" rid="F11"/>. Given the amount of observations, this will still provide useful PAN coverage. We discuss recommendations for use based on this result in Sect. <xref ref-type="sec" rid="Ch1.S4"/>.</p>
      <p id="d2e4352">In Fig. <xref ref-type="fig" rid="F12"/>d, we see that the AIRS <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value is biased low compared to CrIS <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. It is not clear if this bias in the AIRS data is best parameterized as a function of <inline-formula><mml:math id="M232" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, as was the case for CrIS, or if another parameter is a better predictor. <xref ref-type="bibr" rid="bib1.bibx51" id="text.96"/> were able to derive the CrIS bias correction through comparison between CrIS and in situ background <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values. In this work, the need to average a significant number of AIRS soundings to reduce the random sounding-to-sounding noise makes it difficult to identify any relationship between AIRS <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values and <inline-formula><mml:math id="M235" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> column amounts.</p>

      <fig id="F13" specific-use="star"><label>Figure 13</label><caption><p id="d2e4433"><bold>(a)</bold> Noise equivalent spectral radiance (NESR) from the channels in the spectral windows used in the CrIS and AIRS PAN retrievals. The circles give the median NESR value per channel and the error bars show the 25th to 75th percentile range. The medians and percentiles are computed over all soundings from the training and test data listed in Table <xref ref-type="table" rid="T4"/>. <bold>(b)</bold> As <bold>(a)</bold>, but with the NESR values given as a percentage of the corresponding observed radiance.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f13.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Uncertainty estimates and vertical sensitivity</title>
      <p id="d2e4460">The CrIS radiance noise is lower than the AIRS radiance noise, which is a significant advantage when retrieving species, such as PANs, with only weak absorption features. Figure <xref ref-type="fig" rid="F13"/> shows per-channel median and 25th to 75th percentile noise equivalent spectral radiance (NESR) values. Although we use different frequencies in the AIRS and CrIS retrievals, the AIRS NESR values are systematically greater than the CrIS values. Taking all of our test cases for comparing AIRS and CrIS (Table <xref ref-type="table" rid="T4"/>), we find that the median ratio of AIRS to CrIS NESR across all channels is <inline-formula><mml:math id="M236" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5.9. Assuming that single sounding uncertainty scales linearly with radiance noise, that suggests that the AIRS single sounding uncertainty in <inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> should be approximately 0.5 <inline-formula><mml:math id="M238" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, that is, approximately six times the 0.08 <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> value <xref ref-type="bibr" rid="bib1.bibx51" id="text.97"/> calculated for CrIS. This aligns with the correlation between AIRS and CrIS <inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> shown in Fig. <xref ref-type="fig" rid="F12"/>, which shows that AIRS values below 0.5 <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> are dominated by random uncertainty without significant averaging. We also checked the correlation between individual AIRS and CrIS <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values in Fig. <xref ref-type="fig" rid="F14"/>, and similarly see that the values have a spread of <inline-formula><mml:math id="M243" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5 <inline-formula><mml:math id="M244" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. While we expect the error of individual soundings to vary depending on the specific atmospheric and surface conditions for each sounding, we believe 0.5 <inline-formula><mml:math id="M245" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> to be a reasonable estimate of the typical uncertainty in the AIRS <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> data.</p>

      <fig id="F14"><label>Figure 14</label><caption><p id="d2e4576">A heatmap showing the distribution of AIRS <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compared to the corresponding CrIS <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> with averaging kernel adjustment and <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> bias correction. Unlike Fig. <xref ref-type="fig" rid="F12"/>, there is no averaging, this is a comparison of individual soundings.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f14.png"/>

        </fig>

      <fig id="F15" specific-use="star"><label>Figure 15</label><caption><p id="d2e4624">The left two panels <bold>(a, c)</bold> show column averaging kernels for the free tropospheric column average quantities from AIRS (top) and CrIS (bottom). The values are the dot product of the free tropospheric pressure weighting function with the averaging kernel matrix; thus, the averaging kernels shown are weighted by each level's contribution to the column average. The right panel shows the sum across rows of the averaging kernel <xref ref-type="bibr" rid="bib1.bibx14" id="paren.98"/>. This quantity estimates the sensitivity of the column to a given level, without the pressure weighting function. The kernels shown in all panels are the medians in 5 <inline-formula><mml:math id="M250" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">K</mml:mi></mml:mrow></mml:math></inline-formula> surface temperature bins from the good-quality soundings of the US West Coast Fires domain on 11 September 2020. For CrIS, good quality is defined using the standard MUSES quality flag. For AIRS, it uses the PC-based, emissivity, and decision-tree based filters as described at the end of Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f15.png"/>

        </fig>

      <p id="d2e4650">Figure <xref ref-type="fig" rid="F15"/> compares the pressure-weighted column averaging kernels and the sum across the rows of the averaging kernel <xref ref-type="bibr" rid="bib1.bibx14" id="paren.99"/> for AIRS and CrIS for good quality land soundings within the US West Coast Fires domain on 11 September 2020. The averaging kernels shown are the medians of averaging kernels for soundings binned by surface temperature. For both instruments, maximum sensitivity shifts to lower pressure with decreasing surface temperature. However, compared to CrIS, AIRS maximum sensitivity decreases more quickly as surface temperature decreases. We suspect this is due to the greater noise present in the AIRS radiances, with AIRS sensitivity decreasing more with reduced thermal contrast due to the greater noise. However, we have not confirmed this hypothesis. Note that, for both instruments, the averaging kernels shown in the left panels incorporate the pressure weighting function, which is why the values are well below 1.</p>

      <fig id="F16" specific-use="star"><label>Figure 16</label><caption><p id="d2e4660"><bold>(a)</bold> A 2D histogram of degrees of freedom of signal vs. retrieved <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from CrIS. <bold>(b)</bold> A histogram of the CrIS degrees of freedom. <bold>(c)</bold> As <bold>(a)</bold>, but for AIRS. <bold>(d)</bold> as <bold>(b)</bold>, but for AIRS. All panels are from the 11 September 2020 scene over the US West Coast Fires shown in Fig. <xref ref-type="fig" rid="F3"/>. No soundings were removed by filtering.</p></caption>
          <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f16.png"/>

        </fig>

      <p id="d2e4700">Figure <xref ref-type="fig" rid="F16"/> shows the overall degrees of freedom (DOF) of signal for both the AIRS and CrIS products in the 11 September 2020 US West Coast Fire scene. From Fig. <xref ref-type="fig" rid="F16"/>a and b, we can see that the DOFs for the CrIS PAN product are grouped around 1, indicating that there is essentially always enough information to retrieval a single piece of vertical information in the form of a column average. In contrast, Fig. <xref ref-type="fig" rid="F16"/>c and d show that the AIRS DOFs are lower (centered around <inline-formula><mml:math id="M252" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5) with a wider distribution. Greater AIRS <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values do tend to be associated with greater DOFs. This implies that the AIRS product will retain influence from the prior, particularly in background conditions, but can detect sufficiently large PAN enhancements.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Recommendations for use</title>
      <p id="d2e4736">The primary benefit to a retrieval of PAN from AIRS is the longer record available from AIRS compared to CrIS. We envision two primary use cases for this product. The first use case is tracking long term changes in background PAN levels. Given the sounding-to-sounding variation in the AIRS <inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values, this will require significant averaging to discern trends in <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from AIRS. However, Fig. <xref ref-type="fig" rid="F12"/> does show that the root mean squared error between AIRS and CrIS is <inline-formula><mml:math id="M256" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M257" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> when averaged to a 5° <inline-formula><mml:math id="M258" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5° or 10° <inline-formula><mml:math id="M259" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10° box, which is comparable to the CrIS PAN errors. This does not imply that the overall error is <inline-formula><mml:math id="M260" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M261" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> (as the AIRS and CrIS retrievals could have similar systematic errors), only that the AIRS and CrIS records will be consistent to within 0.1 <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> with similar averaging. Table <xref ref-type="table" rid="T6"/> gives ranges of the number of points in each box size from Fig. <xref ref-type="fig" rid="F12"/>. Based on this information, our first recommendation is that users interested in trends in background PAN from the AIRS product choose a spatiotemporal averaging window that has a median of at least 140 soundings passing our quality screening per window which will result in a typical difference versus CrIS of about 0.1 <inline-formula><mml:math id="M263" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. This is chosen as the median number of points (to two significant figures) in a 5° <inline-formula><mml:math id="M264" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5° box (Table <xref ref-type="table" rid="T6"/>), as Fig. <xref ref-type="fig" rid="F12"/> shows this box size is sufficient to reduce the RMSE between AIRS and CrIS to <inline-formula><mml:math id="M265" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M266" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. In principle, it should not matter whether the 140 soundings are accumulated by averaging in time or space, as we assume the AIRS-CrIS <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> differences are similarly uncorrelated in time as in space. We expect this assumption to hold true as long as episodic events that significantly perturb PAN concentrations (such as wildfires) are not included in the time period averaged. We will test this assumption in the future as more data becomes available.</p>

<table-wrap id="T6"><label>Table 6</label><caption><p id="d2e4870">Distribution of the number of points in the different sized boxes used for the AIRS-CrIS comparisons.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Box width</oasis:entry>
         <oasis:entry colname="col2">1st pct.</oasis:entry>
         <oasis:entry colname="col3">25th pct.</oasis:entry>
         <oasis:entry colname="col4">Median</oasis:entry>
         <oasis:entry colname="col5">75th pct.</oasis:entry>
         <oasis:entry colname="col6">99th pct.</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">1°</oasis:entry>
         <oasis:entry colname="col2">10</oasis:entry>
         <oasis:entry colname="col3">12</oasis:entry>
         <oasis:entry colname="col4">15</oasis:entry>
         <oasis:entry colname="col5">22</oasis:entry>
         <oasis:entry colname="col6">46</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">2°</oasis:entry>
         <oasis:entry colname="col2">10</oasis:entry>
         <oasis:entry colname="col3">23</oasis:entry>
         <oasis:entry colname="col4">38</oasis:entry>
         <oasis:entry colname="col5">58</oasis:entry>
         <oasis:entry colname="col6">154</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">5°</oasis:entry>
         <oasis:entry colname="col2">12</oasis:entry>
         <oasis:entry colname="col3">62</oasis:entry>
         <oasis:entry colname="col4">137</oasis:entry>
         <oasis:entry colname="col5">238</oasis:entry>
         <oasis:entry colname="col6">747</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">10°</oasis:entry>
         <oasis:entry colname="col2">25</oasis:entry>
         <oasis:entry colname="col3">150</oasis:entry>
         <oasis:entry colname="col4">406</oasis:entry>
         <oasis:entry colname="col5">642</oasis:entry>
         <oasis:entry colname="col6">2140</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e5007">The second use case is investigating PAN from extreme events, such as wildfires, before the start of the CrIS PAN product. We showed in Fig. <xref ref-type="fig" rid="F11"/> that the AIRS PAN product does reliably see significant <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values of 0.5 to 1 <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. However, users should be aware that there are many cases where a high AIRS <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value within a small spatial area is false. Figure <xref ref-type="fig" rid="F14"/> shows that there is a large fraction of AIRS soundings with <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M272" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.5 <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> that match with CrIS soundings with <inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M275" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.5 <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. Therefore, users looking for PAN caused by extreme events should <list list-type="order"><list-item>
      <p id="d2e5100">ensure that high <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values are spatially connected (as a contiguous plume is more likely to be a real signal than a spurious single-sounding error), and</p></list-item><list-item>
      <p id="d2e5115">check for other species expected to be generated by the event of interest, such as <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> for wildfires.</p></list-item></list></p>
      <p id="d2e5127">These two criteria should help users filter out false positive high <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values. When using other species of interest, users need not restrict themselves to TROPESS products – any good-quality dataset will be useful in this regard. Users interested in extreme events with large <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values should note that the decision tree-based filter can remove soundings with clear PAN enhancements. Custom filtering using only the PC- and emissivity- based filters can be used in such cases to recover the soundings with enhanced PAN; however, users must be aware that the difference with respect to CrIS will likely be larger in such a case. Further, while we believe that the PC-based filter is able to remove most cloud-affected soundings, there may be cases where it is not fully effective. Thus, we encourage users to engage with the algorithm team if there is concern about whether a signal of interest in the AIRS PAN is correct. As stated in Sect. <xref ref-type="sec" rid="Ch1.S3.SS4"/>, users should use a 0.5 <inline-formula><mml:math id="M281" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> uncertainty per sounding when using individual soundings in their analysis.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d2e5171">We have demonstrated the ability to retrieve free tropospheric column amounts of PAN from AIRS spectra. This is more challenging than the existing CrIS retrieval due to the higher radiance noise in AIRS than CrIS and the presence of a gap in the AIRS spectra on the low-frequency side of the PAN spectral feature. The AIRS PAN retrieval is also sensitive to low, warm clouds over oceans, which cause spurious PAN signals in the AIRS PAN retrieval. These spurious signals have been successfully removed with a PC-based filter in testing, but further adjustment may be needed to make this filter fully effective at removing these signals.</p>
      <p id="d2e5174">The AIRS product does have larger errors than the CrIS product and requires care in its application. This is mitigated by the use of a decision tree-based quality filter trained to identify AIRS soundings with <inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values significantly different than the nearest CrIS sounding and by averaging sufficient numbers of AIRS soundings. For studies of background PAN concentrations, we recommend averaging at least 140 AIRS soundings which will result in a <inline-formula><mml:math id="M283" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> error relative to the existing CrIS PAN product. This product opens up the potential for a global record of free tropospheric PAN amounts from 2002 to the present, potentially allowing the evaluation of trends in background PAN for over two decades.</p>
      <p id="d2e5203">This product is planned for inclusion in the TROPESS forward stream, provided AIRS continues to operate. This would allow us to evaluate its performance over a larger range of times than was possible during development. Future work could take advantage of that data set to further test the effectiveness of the PC-based filter on the effects of clouds over ocean. This can also enable us to explore alternative methods of retrieving PAN from AIRS taking advantage of, e.g., more advanced machine learning methods trained to directly retrieve <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, that may reduce the sounding-to-sounding noise. An interesting experiment would be to test whether a well-designed machine learning approach could be trained to directly predict the <inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value CrIS would retrieve given only the AIRS radiances.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <label>Appendix A</label><title>Decision tree explainability</title>
      <p id="d2e5239">We use SHapeley Addition exPlanations <xref ref-type="bibr" rid="bib1.bibx35" id="paren.100"/> to investigate what values most contributed to the decision trees' prediction of AIRS quality in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>. The results are shown in Fig. <xref ref-type="fig" rid="FA1"/>. Since these are classification decision trees, the SHAP value represents an increase or decrease in the probability of the sounding being classified as “good,” with positive SHAP values indicating a high “good” probability.</p>

      <fig id="FA1" specific-use="star"><label>Figure A1</label><caption><p id="d2e5251">Beeswarm plot showing the Shapley values for the 13 input variables to the quality filtering decision trees that have non-zero contributions to the output flag. The meaning of each input variable's short name is given in Table <xref ref-type="table" rid="T5"/>.</p></caption>
        <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f17.png"/>

      </fig>

      <p id="d2e5262">Some of the relationships shown in Fig. <xref ref-type="fig" rid="FA1"/> make physical sense:</p>
      <p id="d2e5268"><list list-type="bullet">
          <list-item>

      <p id="d2e5274">Res. Norm. Init., the pre-PAN residual, follows the expected pattern where smaller residuals are more likely to yield a good sounding. Since this is the pre-PAN retrieval residual, this suggests that a successful retrieval is highly dependent on the previous steps minimizing the observation/model mismatch from other atmospheric parameters. This is a reasonable relationship, as PAN is a weaker absorber than the trace gases optimized in a previous step (Table <xref ref-type="table" rid="T3"/>).</p>
          </list-item>
          <list-item>

      <p id="d2e5282"><inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:mi>K</mml:mi><mml:mo>⋅</mml:mo><mml:mi>d</mml:mi><mml:mi>L</mml:mi></mml:mrow></mml:math></inline-formula>, which represents maximum of the absolute value of the dot product of the residuals with the Jacobian, is essentially a summary of the residual weighted towards frequencies with strong absorbance. Therefore, it is likewise sensible that decreasing values of this quantity increase the chance of a sounding being classified as “good.”</p>
          </list-item>
          <list-item>

      <p id="d2e5301">Rad. resid. mean, the mean of the post-PAN residual, should indicate how well the posterior solution matches the observed radiances. This is also a sensible metric, as it indicates how well the optimization algorithm minimized the cost function, so lower values should correlate with a higher probability of the sounding being marked as good quality, which is what we see in the land model.</p>
          </list-item>
        </list></p>
      <p id="d2e5306">Several of the other relationships from Fig. <xref ref-type="fig" rid="FA1"/> are less clear. For example, mean cloud optical depth and the maximum signal-to-noise (SNR) ratio seem backwards: higher cloud optical depth and lower SNR seem unlikely to correlate with good soundings, as generally more optically thick clouds should obfuscate the radiances of interest and lower SNR spectra should be more difficult to extract a signal from. However, we must remember that these decision trees are trained to predict if AIRS returned <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> similar to CrIS. Thus, we interpret this behavior to mean that these are cases where AIRS and CrIS return similar <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values due to these factors. Optically thick clouds likely mean that both instruments are not able to obtain much information about the trace gas columns, and therefore return similar values. Likewise, low SNR spectra will have a low information content, thus both retrievals are more likely to return the prior. Since we use a consistent prior in both retrievals, this would result in similar <inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d2e5344">Rad. resid. std. dev. shows another unexpected relationship. This is the standard deviation of the post-PAN radiance residuals. Larger values generally indicate that there is a lot of variation in how well the posterior state matched the observed radiances. This can occur if, e.g., narrow features in the radiances were not fit well by the posterior state causing specific frequencies to have large residuals. Interestingly, both models associate greater values with improved likelihood of a sounding being good quality. This may indicate that there are narrower absorption features than PAN which the optimization can try to fit incorrectly with PAN, and thus the decision tree is identifying that soundings were these non-PAN absorption features are not erroneously fit are more likely to be good quality. However, this is speculative. Alternatively, it may be similar to mean cloud optical depth and SNR, where this is simply identifying cases where the posterior is similar to the prior. Since the AIRS and CrIS retrievals use the same prior, this would result in consistent values for the same reasons as mentioned for cloud optical depth and SNR.</p>
      <p id="d2e5347">For the remaining features, we mostly see them centered on zero impact, with the long tails to either end having a mix of high and low input values. This indicates that there is not a clear correlation between these input values and the predicted quality.</p>
</app>

<app id="App1.Ch1.S2">
  <label>Appendix B</label><title>Physical interpretation of emissivity interference</title>
      <p id="d2e5359">Figure <xref ref-type="fig" rid="F9"/> showed that, in the region with low emissivity near 1025 <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, very high AIRS <inline-formula><mml:math id="M292" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was retrieved, but CrIS retrievals returned very low <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. These opposed effects of the silicate feature discussed in relation to Fig. <xref ref-type="fig" rid="F9"/> arises from the relative shapes of the emissivity and PAN spectral features and the position of the AIRS and CrIS microwindows.</p>
      <p id="d2e5402">Figure <xref ref-type="fig" rid="FB1"/>a shows the surface emissivity near 1025 <inline-formula><mml:math id="M294" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> again, and Fig. <xref ref-type="fig" rid="FB1"/>b shows the spectral shape of the emissivity feature in two boxes marked in Fig. <xref ref-type="fig" rid="FB1"/>a. From this, it is clear how the low emissivity near 1025 <inline-formula><mml:math id="M295" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> used in our quality filtering corresponds to a dip in the emissivity in the frequency range of the PAN feature (the gray shading in Fig. <xref ref-type="fig" rid="FB1"/>b). Figure <xref ref-type="fig" rid="FB1"/>c expands the PAN frequency range and shows the emissivity features along with the PAN feature and AIRS and CrIS windows. Due to steps prior to the PAN step, the emissivity versus frequency is set to a straight line between 780 and 810 <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> with no fitting inside the 780–810 <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> window. We can see that the AIRS windows fall primarily on frequencies where the slopes of the PAN and southern box's emissivity features versus frequency have the same sign. Thus, in AIRS, the silicate emissivity feature present in the southern box is fit by the retrieval as additional PAN, as increasing the absorbance due to PAN will generally reduce the residuals. However, the second CrIS window covers frequencies where the PAN and emissivity features have opposite slopes versus frequency. For CrIS therefore, the retrieval may attempt to invert the PAN feature to produce the concave down shape seen in the emissivity, resulting in negative <inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values over regions with this feature.</p><fig id="FB1"><label>Figure B1</label><caption><p id="d2e5485"><bold>(a)</bold> A map of surface emissivity at 1025 <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, as in Fig. <xref ref-type="fig" rid="F9"/>, but with two boxes indicating areas with different emissivity values. <bold>(b)</bold> Spectral shape of the emissivity values in the two boxes marked on panel <bold>(a)</bold>. The lines indicate the mean emissivity and the shaded areas <inline-formula><mml:math id="M300" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 standard deviation within each box. The grey area marks the frequency range plotted in panel <bold>(c)</bold>. <bold>(c)</bold> The mean emissivity from the same boxes as <bold>(b)</bold>, with the PAN spectral feature and microwindows from Fig. <xref ref-type="fig" rid="F1"/> overplotted. The AIRS and CrIS microwindows are offset vertically solely to make them distinguishable where they overlap.</p></caption>
        
        <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f18.png"/>

      </fig>

</app>

<app id="App1.Ch1.S3">
  <label>Appendix C</label><title>Using a single decision tree for quality filtering</title>
      <p id="d2e5547">For the decision tree-based filter described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>, we tested using a single decision tree for both land and ocean soundings instead of separate trees for those two categories of soundings. In principle, a single decision tree would be preferable, as it would both simplify implementation and eliminate concerns that mixed land/ocean soundings or soundings near a coast could be filtered using the less applicable decision tree. This section shows why we elected to use separate decision trees instead.</p>
      <p id="d2e5552">Figure <xref ref-type="fig" rid="FC1"/> shows the correlation between AIRS and CrIS <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mtext>PAN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> with different levels of averaging when using the single decision tree in the filter, instead of separate decision trees for land and ocean soundings. Comparison to Fig. <xref ref-type="fig" rid="F12"/> shows that, on the gross scale represented by the averaging boxes used here, neither option is clearly better than the other. Using a single decision tree instead of separate trees yields similar <inline-formula><mml:math id="M302" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> and RMSE values, with the single decision tree performing better at some levels of averaging and the separate trees performing better for others.</p>
      <p id="d2e5577">However, when we compare Fig. <xref ref-type="fig" rid="FC2"/> to Fig. <xref ref-type="fig" rid="F10"/>, we can see in panels d and h that the single decision tree (Fig. <xref ref-type="fig" rid="FC2"/>) removes more of the PAN plumes compared to the separate trees (Fig. <xref ref-type="fig" rid="F10"/>). This was the main reason we chose to use separate decision trees to filter land and ocean soundings, as the ability to examine plumes from extreme events is one of our primary use cases.</p><fig id="FC1"><label>Figure C1</label><caption><p id="d2e5591">This figure is the same as Fig. <xref ref-type="fig" rid="F12"/>, except the filtering uses a single decision tree trained on and applied to both land and ocean soundings, rather than separate land and ocean trees.</p></caption>
        
        <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f19.png"/>

      </fig>

      <fig id="FC2"><label>Figure C2</label><caption><p id="d2e5606">This figure is the same as Fig. <xref ref-type="fig" rid="F10"/>, except the filtering uses a single decision tree trained on and applied to both land and ocean soundings, rather than separate land and ocean trees.</p></caption>
        
        <graphic xlink:href="https://amt.copernicus.org/articles/19/249/2026/amt-19-249-2026-f20.png"/>

      </fig>


</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d2e5625">A Jupyter notebook to reproduce the figures in this paper is available at <ext-link xlink:href="https://doi.org/10.5281/zenodo.15305278" ext-link-type="DOI">10.5281/zenodo.15305278</ext-link> <xref ref-type="bibr" rid="bib1.bibx45" id="paren.101"/>. The data used by that notebook are available at <ext-link xlink:href="https://doi.org/10.22002/stfqh-edj29" ext-link-type="DOI">10.22002/stfqh-edj29</ext-link> <xref ref-type="bibr" rid="bib1.bibx34" id="paren.102"/>. AIRS level 1B radiances <xref ref-type="bibr" rid="bib1.bibx1" id="paren.103"/> were obtained from <uri>https://airsl1.gesdisc.eosdis.nasa.gov/data/Aqua_AIRS_Level1/AIRIBRAD.005/</uri> (last access: 12 March 2025). CrIS level 1B radiances <xref ref-type="bibr" rid="bib1.bibx68" id="paren.104"/> were obtained from <uri>https://sounder.gesdisc.eosdis.nasa.gov/data/SNPP_Sounder_Level1/SNPPCrISL1B.2</uri> (last access: 12 March 2025). GOES imagery were obtained from <uri>https://registry.opendata.aws/noaa-goes</uri> (last access: 8 December 2022, <xref ref-type="bibr" rid="bib1.bibx46" id="altparen.105"/>). MODIS cloud properties from the MYD06 product <xref ref-type="bibr" rid="bib1.bibx39" id="paren.106"><named-content content-type="pre">collection 6.1,</named-content></xref> and the associated geolocation MYD03 product were downloaded from the Level-1 and Atmosphere Archive and Distribution System (LAADS DAAC, <uri>https://ladsweb.modaps.eosdis.nasa.gov/missions-and-measurements/products/MYD06_L2/</uri>, last access: 1 September 2023).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d2e5671">VHP developed the initial concept and secured funding. SSK performed the initial experiments to test if the AIRS PAN retrieval was practical and additional tests to determine the best choice of microwindows. JLL identified the possible sets of microwindows to use and carried out the other work described in this paper with input from VHP and SSK. JLL wrote the manuscript, VHP and SSK reviewed the manuscript.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d2e5677">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d2e5683">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. While Copernicus Publications makes every effort to include appropriate place names, the final responsibility lies with the authors. Views expressed in the text are those of the authors and do not necessarily reflect the views of the publisher.</p>
  </notes><ack><title>Acknowledgements</title><p id="d2e5689">This research was carried out at the Jet Propulsion Laboratory (JPL), California Institute of Technology, under a contract with NASA (80NM0018D0004). Computational support was provided by the TROPESS Scientific Computing Facility at JPL. Parts of the results in this work make use of the colormaps in the CMasher package <xref ref-type="bibr" rid="bib1.bibx75" id="paren.107"/>.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d2e5697">This research has been supported by the National Aeronautics and Space Administration (contract no. 80NM0018D0004).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d2e5703">This paper was edited by Folkert Boersma and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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