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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">AMT</journal-id>
<journal-title-group>
<journal-title>Atmospheric Measurement Techniques</journal-title>
<abbrev-journal-title abbrev-type="publisher">AMT</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Meas. Tech.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1867-8548</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/amt-8-3537-2015</article-id><title-group><article-title>Detailed characterizations of the new Mines Douai  comparative <?xmltex \hack{\newline}?>
reactivity method instrument via laboratory <?xmltex \hack{\newline}?> experiments and modeling</article-title>
      </title-group><?xmltex \runningtitle{Detailed characterizations of the new MD-CRM instrument}?><?xmltex \runningauthor{V.~Michoud et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff4">
          <name><surname>Michoud</surname><given-names>V.</given-names></name>
          <email>vincent.michoud@mines-douai.fr</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2 aff3 aff5">
          <name><surname>Hansen</surname><given-names>R. F.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4455-7161</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff4">
          <name><surname>Locoge</surname><given-names>N.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Stevens</surname><given-names>P. S.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9899-4215</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2 aff4">
          <name><surname>Dusanter</surname><given-names>S.</given-names></name>
          <email>sebastien.dusanter@mines-douai.fr <?xmltex \hack{\newline}?></email>
        </contrib>
        <aff id="aff1"><label>1</label><institution>Mines Douai, SAGE,  59508  Douai, France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>School of Public and Environmental Affairs, Indiana University,
Bloomington, IN, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of chemistry, Indiana University, Bloomington, IN, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Université de Lille, Lille, France</institution>
        </aff>
        <aff id="aff5"><label>a</label><institution>now at: School of chemistry, University of Leeds, Leeds, UK</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">S. Dusanter (sebastien.dusanter@mines-douai.fr) <?xmltex \hack{\newline}?>  and V. Michoud (vincent.michoud@mines-douai.fr)</corresp></author-notes><pub-date><day>31</day><month>August</month><year>2015</year></pub-date>
      
      <volume>8</volume>
      <issue>8</issue>
      <fpage>3537</fpage><lpage>3553</lpage>
      <history>
        <date date-type="received"><day>1</day><month>April</month><year>2015</year></date>
           <date date-type="rev-request"><day>16</day><month>April</month><year>2015</year></date>
           <date date-type="rev-recd"><day>24</day><month>July</month><year>2015</year></date>
           <date date-type="accepted"><day>29</day><month>July</month><year>2015</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015.html">This article is available from https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015.html</self-uri>
<self-uri xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015.pdf">The full text article is available as a PDF file from https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015.pdf</self-uri>


      <abstract>
    <p>The hydroxyl (OH) radical is an important oxidant in the troposphere, which
controls the lifetime of most air quality- and climate-related trace gases.
However, there are still uncertainties concerning its atmospheric budget, and
integrated measurements of OH sinks have been valuable to improve this
aspect. Among the analytical tools used for measuring total OH reactivity in
ambient air, the comparative reactivity method (CRM) is spreading rapidly in
the atmospheric community. However, measurement artifacts have been
highlighted for this technique, and additional work is needed to fully
characterize them.</p>
    <p>In this study, we present the new Mines Douai CRM instrument, with an
emphasis on the corrections that need to be applied to ambient measurements
of total OH reactivity. Measurement artifacts identified in the literature
have been investigated, including (1) a correction for a change in relative
humidity between the measurement steps leading to different OH levels, (2)
the formation of spurious OH in the sampling reactor when hydroperoxy
radicals (HO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> react with nitrogen monoxide (NO), (3) not operating the
CRM under pseudo-first-order kinetics, and (4) the dilution of ambient air
inside the reactor. The dependences of these artifacts on various measurable
parameters, such as the pyrrole-to-OH ratio and the bimolecular reaction
rate constants of ambient trace gases with OH, have also been studied. Based
on these observations, parameterizations are proposed to correct ambient OH
reactivity measurements. On average, corrections of 5.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.2,
9.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 15.7, and 8.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.8 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> were respectively
observed for (1), (2) and (3) during a field campaign performed in Dunkirk,
France (summer 2014).</p>
    <p>Numerical simulations have been performed using a box model to check whether
experimental observations mentioned above are consistent with our
understanding of the chemistry occurring in the CRM reactor. Two different
chemical mechanisms have been shown to reproduce the magnitude of
corrections (2) and (3). In addition, these simulations reproduce their
dependences on the pyrrole-to-OH ratio and on bimolecular reaction rate
constants of gases reacting with OH. The good agreement found between
laboratory experiments and model simulations gives us confidence in the
proposed parameterizations. However, it is worth noting that the numerical
values given in this study are suitable for the Mines Douai instrument and
may not be appropriate for other CRM instruments. It is recommended that
each group characterize its own instrument following the recommendations
given in this study.</p>
    <p>An assessment of performances for the Mines Douai instrument, including a
propagation of errors from the different corrections, indicates a limit of
detection of 3.0 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and total uncertainties of 17–25 % for OH
reactivity values higher than 15 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> mixing ratios lower
than  30 ppbv.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>The hydroxyl (OH) radical is known to be the main daytime oxidant in the
troposphere (Levy, 1972), leading to the oxidation of most atmospheric trace
gases, including climate-related compounds such as methane, and the
formation of harmful secondary pollutants such as ozone (O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and
secondary organic aerosols (SOAs). Due to the key role of OH in atmospheric
chemistry, it is important to correctly describe the OH budget in
atmospheric models. Field campaigns including OH measurements have been
carried out to assess our understanding of photochemical processes
controlling the OH budget (see Stone et al., 2012, as a review). In these
studies, measurements of OH concentrations are often compared to predictions
from photochemical models that are constrained by measured concentrations of
long-lived species and environmental parameters (e.g., Carslaw et al., 2002;
Martinez et al., 2003; Dusanter et al., 2009; Hofzumahaus et al., 2009;
Michoud et al., 2012). This approach allows testing our understanding of
different aspects of the OH chemistry, i.e., sources, sinks and propagation
reactions.</p>
      <p>Volatile organic compounds (VOCs) are of particular interest for the OH
chemistry due to the presence of a large number of reactive species
(10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula>–10<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which are emitted by natural and anthropogenic sources or formed
photochemically (Goldstein and Galbally, 2007). However, measurements of
VOCs are challenging and measuring an exhaustive suite of VOCs is unfeasible
using current analytical techniques. During field campaigns, only 60–70 VOCs
are usually monitored, which is orders of magnitudes lower than expected in
the atmosphere (Goldstein and Galbally, 2007). Therefore, there are
legitimate concerns regarding the completeness of the measured pool of VOCs
and the use of these measurements to characterize the total sink of OH.</p>
      <p>To address this issue, an integrated measurement of the total sink of OH,
referred to as total OH reactivity, has been proposed by Calpani et al. (1999)
and Kovacs and Brune (2001). OH reactivity measurements are important for
several reasons: (i) they allow for better constrainment of photochemical models
during radical closure exercises and for testing the representativeness of the
chemical mechanism used in these models; (ii) since OH exhibits steady-state
concentrations in the atmosphere due to its short lifetime, the measured
total OH reactivity can be used together with measured OH concentrations to
calculate total production rates of OH (comparing the latter to production
rates calculated from measured OH precursors provides a critical test of our
understanding of OH sources; Whalley et al., 2011); and (iii) the total OH
reactivity calculated from measured trace gases can be compared to the
measurements to see whether unidentified reactive species are present in
ambient air, with the goal of assessing their importance for atmospheric
chemistry. If statistically significant, the difference observed between
measurements and calculations is referred to as “missing OH reactivity”.</p>
      <p><?xmltex \hack{\newpage}?>Large missing OH reactivity is often found in different types of
environments (e.g., Di Carlo et al., 2004; Lou et al., 2010; Dolgorouky et
al., 2012; Edwards et al., 2013; Hansen et al., 2014), highlighting the
presence of important unmeasured reactive compounds. This missing reactivity
has been attributed to unidentified primary biogenic VOCs or unmeasured
oxidation products of primary VOCs that have yet to be identified.</p>
      <p>The first techniques proposed to measure total OH reactivity, the total OH
loss rate method (TOHLM) (Kovacs and Brune, 2001) and the pump-probe method
(Sadanaga et al., 2004), require monitoring OH radicals using laser
apparatus, making them costly, and require highly skilled operators. More
recently, a novel technique called the comparative reactivity method (CRM) has
been proposed in the literature (Sinha et al., 2008). This technique does
not require direct OH measurements and is based on monitoring competitive
reactions of OH with a reference molecule (pyrrole) and ambient trace gases
inside a sampling reactor. The total OH reactivity is derived from a series
of measurement steps during which the pyrrole concentration is quantified
using a specific detector, being most of the time a proton-transfer-reaction
mass spectrometer (PTR-MS). An interesting advantage of CRM
instruments is the small sampling flow rate (a few hundreds of SCCM) that is
needed compared to TOHLM and pump-probe instruments (a few SLPM). This
advantage allows its use to be extended to experiments that use small atmospheric chambers
(Nölscher et al., 2012b) and cuvettes (Nölscher et al., 2013).</p>
      <p>CRM instruments have been widely used during field campaigns (Sinha et al.,
2008, 2010, 2012; Kim et al., 2011; Dolgorouky et al., 2012;
Nölscher et al., 2012a, 2013;
Hansen et al., 2015; Zannoni et al., 2015) and chamber experiments
(Nölscher et al., 2012b, 2014) since its
development, and new research groups are developing similar systems. Its
deployment in the field has led to important observations related to high
missing reactivity. For instance, high levels of missing reactivity were
observed during heat-stressed conditions in a boreal forest (Nölscher et
al., 2012a) due to unmeasured reactive VOCs from primary or secondary
origins, as well as during the transport of aged continental air masses in
an urban environment in Paris (Dolgorouky et al., 2012), likely due to
unmeasured (multi-)oxidized compounds formed from the oxidation of
anthropogenic emissions.</p>
      <p>A new CRM instrument has been developed and coupled to a proton transfer
reaction time-of-flight mass spectrometer (PTR-ToFMS) at Mines Douai
(France). This instrument has been compared to the pump-probe technique in
an urban environment (Hansen et al., 2015) and to another CRM instrument at
a remote site (Zannoni et al., 2015). Generally, good agreements have been
observed and reasons for some deviations have been identified.</p>
      <p>However, this technique requires multiple corrections (Hansen et al., 2015),
especially to account for an artifact generated by ambient NO (Sinha et al.,
2008; Dolgorouky et al., 2012), which has limited its use to low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
environments, except for two previous studies (Dolgorouky et al., 2012;
Hansen et al., 2015). Other corrections are also needed to derive reliable
measurements of total OH reactivity due to (i) changes in humidity between
the different measurement steps, (ii) not operating the CRM under
pseudo-first-order kinetics (Sinha et al., 2008), and (iii) the dilution of
ambient air inside the reactor. While the need for correcting the
measurements is known from the early use of CRM, a comprehensive
characterization of these corrections has yet to be published.</p>
      <p>In this study, we describe the CRM instrument constructed in Mines Douai
(MD-CRM), highlighting the modifications made in the setup since its first
deployment (Hansen et al., 2015). A detailed description of the corrections
needed to derive accurate OH reactivity measurements is presented based on
intensive laboratory experiments. Furthermore, simulations performed using
different chemical mechanisms are compared to experimental observations to
investigate our understanding of the chemistry occurring inside the sampling
reactor. Finally, figures of merit such as limit of detection and
measurement uncertainties are assessed.</p>
</sec>
<sec id="Ch1.S2">
  <title>The comparative reactivity method (CRM)</title>
<sec id="Ch1.S2.SS1">
  <title>General principle</title>
      <p>As mentioned above, the comparative reactivity method relies on monitoring
how a reference molecule competes with ambient trace gases to react with
artificially produced OH radicals inside a sampling reactor. This technique
was first described by Sinha et al. (2008) and has been discussed in
detail by Hansen et al. (2015). Briefly, a reference molecule that is not
present in the atmosphere (pyrrole, C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>NH), dry nitrogen
(N<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and dry zero air are first introduced into a reactor equipped
with a UV mercury lamp. During this step, while the lamp is on, OH is not
produced inside the reactor due to the dry conditions. The pyrrole
concentration (C1) is monitored using a suitable detector, most of the time
by PTR-MS at the protonated <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> 68. C1 corresponds to the initial
concentration of pyrrole inside the reactor after potential photolysis due
to photons leaking inside the reactor. Then, dry gases (zero air and
N<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are replaced by wet gases to generate OH radicals from H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O
photolysis. A decrease of the pyrrole concentration (C2) is observed due to
its reaction with OH. Once the C2 concentration is acquired, wet zero air is
replaced by ambient air and competitive OH reactions occur between pyrrole
and ambient trace gases. This competition leads to an increase of the
pyrrole concentration to C3. A schematic of the pyrrole levels observed
during these three measurement steps is shown in Fig. 1 (insert). The OH reactivity is calculated
using Eq. (1), assuming first-order kinetics, with
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> corresponding to the bimolecular rate constant of the reaction
between pyrrole and OH (1.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at
25 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C; Atkinson et al., 1984; Dillon et al., 2012).
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>⋅</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></disp-formula>
          The conventional method described above to record C1 takes a long time, i.e.,
2–3 h, since completely dry conditions are needed inside the reactor. In
addition, this method likely leads to an overestimation of pyrrole
photolysis inside the reactor due to residual water. For these reasons, the
scavenger method described in Zannoni et al. (2015) was preferred for this
study. As described in Zannoni et al. (2015), this method consists in
introducing an elevated concentration of a specific species (here propane at
approximately 900 ppm) acting as an OH scavenger. This approach is
advantageous since it takes only a few minutes to record a stable C1
concentration and it can be performed keeping the wet conditions that are
needed for other measurement steps.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>Schematic of the comparative reactivity method instrument
developed at Mines Douai. Flow rates of different gases injected inside the
CRM reactor (pyrrole, N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, air) or extracted from the reactor (PTR-MS
sampling, reactor exhaust) are shown. The insert displays the measurement
sequence for pyrrole (C1, C2, C3) during OH reactivity measurements.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f01.png"/>

        </fig>

      <p>As stated in the introduction, this technique suffers from several
measurement artifacts for which the measured OH reactivity values need to be
corrected. Corrections, in the order of their application in the data
processing, are as follows:
<list list-type="bullet"><list-item>
      <p>correction in C2 for RH variations between C2 and C3;</p></list-item><list-item>
      <p>correction in C3 for the spurious production of OH from the reaction between HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (mainly formed from H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O photolysis) and ambient NO;</p></list-item><list-item>
      <p>correction in OH reactivity values calculated from Eq. (1) for not operating the instrument under pseudo-first-order conditions;</p></list-item><list-item>
      <p>correction in OH reactivity values for dilution, due to the addition of N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> inside the reactor.</p></list-item></list></p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Description of the Mines Douai CRM instrument</title>
      <p>A description of the CRM instrument developed at Mines Douai (MD-CRM) as
well as its operating conditions is given in this section. The MD-CRM
instrument has been previously described in Hansen et al. (2015), and a
schematic is shown in Fig. 1. Several
improvements have been performed since its first deployment during the
intercomparison exercise presented in Hansen et al. (2015), in particular to
lower pyrrole photolysis below 5 % by changing the UV mercury lamp
position in the setup (Laser Components, model 11SC-1). As a consequence,
the photolysis of other trace gases in the reactor has also been reduced. As
discussed in Hansen et al. (2015), photolysis of VOCs inside the reactor led
to unaccounted-for OH reactivity during tests performed using synthetic VOC
mixtures. Up to 55 % of the OH reactivity was not measured for a complex
OVOC mixture. For the current MD-CRM setup, direct observations of VOC
photolysis inside the reactor indicate less than 1 % of photolysis for
OVOCs such as methanol, acetaldehyde, and acetone (see Table S1 in the Supplement). In contrast to what was observed with the prior version of this
instrument, the new setup allows reconciling measured and calculated
reactivity within 9 % for similar VOC mixtures (see Supplement S1).</p>
      <p>Pyrrole (Praxair, 10 ppm in N<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (Air Liquide, alpha gaz 2;
or Praxair, N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> 6.0) were introduced into a glass flow reactor built by
the Max-Planck-Institut für Chemie (Mainz, Germany) at flow rates of 2.3
and 70 mL min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was humidified by passing it
through a water bubbler or was kept dry, depending on the measurement step.
The C1–C2–C3 pyrrole mixing ratios were monitored by a PTR-ToFMS instrument
(Kore Technology, second generation), whose sampling flow rate was regulated
at 145 mL min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> using a mass flow controller (MFC) (MKS inst,
200 sccm). Dry zero air was produced by an air generator (CLAIND, model
2301TOC). For wet conditions, humid zero air was generated by sampling
ambient air through a catalytic converter made of a stainless-steel tubing
filled with Pt wool held at 350 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (prior to 2014). This setup
generates zero air at the same relative humidity (RH) as ambient air. More
recently (after 2014), humid zero air was generated using a similar air
generator to that of the dry conditions. The flow was split and passed through
two MFCs (MKS inst., 500 sccm), one of them being sent through a water
bubbler. The two flows were then mixed back together to generate wet zero
air at a specific RH. Two RH probes (Measurements Specialties Inc, model
HM1500LF) were mounted in this setup to measure RH in both the generated
humidified air and the ambient air. The flow rates of the two MFCs were
controlled using a LabView (National instrument) program to get the same RH
in zero and ambient air. This new setup was designed for high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
environments since these species are not suppressed from ambient air using a
catalytic converter, which in turn can lead to erroneous measurements of C2.
Finally, a pump draws 240 mL min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at the end of the reactor. For this
configuration, approximately 310 mL min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> of zero air (during C1 and
C2) or of ambient air (during C3) is sampled by the CRM instrument.</p>
      <p>To minimize the residence time inside the sampling line, a Teflon pump is
added upstream of the reactor to sample ambient air at approximately 1 L min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, with the excess going to an exhaust. This pump is only installed
during field campaigns, and all the laboratory tests presented in this study
were conducted without it.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Description of the laboratory experiments</title>
      <p>For laboratory tests presented in this study, the CRM was usually kept under
C2 conditions (humid zero air provided to the reactor), and gas standards of
different natures (VOCs or NO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were directly injected in the line
bringing zero air to the reactor as shown in Fig. 1. During these experiments, the C1 level was approximately 57 ppb,
corresponding to a photolysis of 5 % of 60.4 ppb of pyrrole introduced
inside the reactor, and the C2 level ranged from 17 to 43 ppb, depending on the
level of RH used during each experiment.</p>
<sec id="Ch1.S2.SS3.SSS1">
  <title>Changes in RH between C2 and C3</title>
      <p>While the use of a catalytic converter or a dynamic humidification of zero
air helped to reduce differences in RH between C2 and C3, small differences
were still observed. Since the concentration of OH inside the reactor is
driven by water photolysis, a small difference in RH can lead to
significantly different OH levels between C2 and C3, and as a consequence to an artifact
in the C2 measurement (Sinha et al., 2008). Therefore, a correction is
directly applied to the pyrrole concentrations measured during C2 as
proposed in Dolgorouky et al. (2012). To assess this correction,
experimental determinations of the C2 sensitivity to humidity were performed
measuring C2 at various RH before, during, and after field campaigns. These
tests were made by introducing various flow rates of dry zero air (from 50
to 300 sccm) inside the sampling line. The dilution of humid ambient air
with dry zero air allowed RH to be altered over a large range (typically 20–60 %, Fig. 2).</p>
      <p>To track relative humidity during these experiments and during ambient
measurements of OH reactivity, we use the ratio between <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> 37 (cluster ion
H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">⚫</mml:mi></mml:math></inline-formula>H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O) and <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> 19 (H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> monitored by PTR-ToFMS.
Indeed, H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> ions can cluster in the drift tube of PTR-MS
instruments (de Gouw and Warneke, 2007) to form water clusters
(H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>(H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O)<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">n</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> whose levels depend on relative humidity
inside the PTR-MS reactor. A linear relationship was found between RH and
the <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> 37-to-<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> 19 ratio (referred to as <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> ratio in the following)
during laboratory tests (not shown).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Changes in C2 due to changes in RH. RH is tracked using the
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> ratio monitored by PTR-ToFMS. The corresponding RH measured in the
CRM reactor at 22 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C is given on a second <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis. Three
experiments conducted during the Dunkirk field campaign are shown. The solid
black line is a linear regression for the three experiments. Red, blue, and
green lines are linear regressions for individual experiments made on 26
June, 2 July, and 31 July, respectively. Error bars are the measurement
precision (1<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Black and red intervals are the mean and the maximum
variations of <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> observed between C2 and C3 during the Dunkirk
campaign, respectively.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f02.png"/>

          </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <?xmltex \opttitle{NO and NO${}_{{2}}$ artifacts}?><title>NO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> artifacts</title>
      <p>As mentioned above, OH radicals are artificially generated in the sampling
reactor from water photolysis using a mercury lamp. A drawback of this
method is the formation of a similar amount of HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radicals, since
hydrogen atoms are formed in the water photolysis process, which then
quickly react with oxygen to form HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. When ambient NO is sampled
inside the reactor, these HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radicals can be rapidly converted into OH
radicals. This secondary formation of OH leads to differences in OH levels
between C2 and C3, and therefore to an artifact in the C3 measurement. To
assess the required correction for C3 values, different amounts of NO (from
6 to 120 ppb) were introduced inside the reactor while sampling humid zero
air. Similar experiments were conducted by adding ethane and isoprene
together with NO in the sampling reactor, leading to VOC-induced reactivity
values of 22.2  and 36.6 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. These experiments
have been conducted at different apparent pyrrole-to-OH ratios ranging from
1.6 to 3.9 and determined by Eq. (2). This
ratio is used to gauge the kinetic regime in the CRM reactor (Sinha et al.,
2008). For simplicity, this apparent pyrrole-to-OH ratio (Supplement S3) is referred to as the pyrrole-to-OH ratio in the following. In
practice, this ratio is adjusted by changing RH in the reactor, which in
turn leads to a change in OH levels.
              <disp-formula id="Ch1.E2" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="normal">pyrrole</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>
            While NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> is not expected to lead to the formation of secondary OH
inside the reactor, its conversion into NO through photolysis or other
chemical processes can cause an artifact. To test the effect of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> on
C3 measurements, we followed the same procedure as described above for NO.
Different amounts of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (from 60 to 410 ppb) were introduced inside
the CRM reactor when sampling humid zero air at pyrrole-to-OH ratios ranging
from 1.6 to 3.2.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS3">
  <title>Artifact due to not operating the CRM under pseudo-first-order
conditions</title>
      <p>Measured OH reactivity values are calculated using Eq. (1). In this equation, pseudo-first-order
conditions are assumed for pyrrole; i.e., pyrrole concentrations are at least
several times higher than OH concentrations. However, operating conditions
used for CRM instruments do not comply with this assumption, and the
calculated values (Eq. 1) need to be corrected. To assess this correction,
several gas standards (ethane, ethene, propane, propene, and isoprene) were
introduced inside the CRM reactor at different concentrations. This allows
comparing the calculated OH reactivity generated by the standards
(reactivity ranging from 6.5 to 65 s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to the OH reactivity measured
using Eq. (1). These experiments have been conducted at pyrrole-to-OH
ratios ranging from 1.4 to 2.6.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Model Descriptions</title>
      <p>The laboratory experiments performed in this study were compared to results
from zero-dimensional (0-D) model simulations to test our understanding of
the chemical processes occurring inside the reactor. These simulations were
conducted using two different mechanisms: a simple mechanism and the Master
Chemical Mechanism (MCM) v3.2 (<uri>http://mcm.leeds.ac.uk/MCM</uri>) (Jenkin et al., 1997, 2003, 2012;
Saunders et al., 2003;   Bloss et al., 2005). The two chemical mechanisms are presented in the following. The
FACSIMILE solver was used to solve the differential equations generated by
the different mechanisms. These simulations have been conducted constraining
the box model by initial concentrations of pyrrole, OH, and different gas
standards used during the laboratory experiments. Both models were used to
simulate the pyrrole modulations (C1–C2–C3).</p>
      <p>Simulations were performed considering an ideal case where a finite amount
of OH is introduced in a fresh mixture of air/standard trace gases, assuming
plug-flow conditions in the reactor. In this scenario, (i) a small amount of
OH is introduced in the air mixture, (ii) OH fully reacts with trace gases
leading to oxidation products, and (iii) the air mixture is refreshed at the OH
injector tip before more OH is added. However, OH is produced continuously
at the injector tip, and OH can potentially react with byproducts and peroxy
radicals previously formed since constant flows are maintained. While the
simulation procedure used in this study may need some refinements, it is
however interesting to compare trends observed during experimental tests to
model simulations when some parameters such as the pyrrole-to-OH ratio are
varied.</p>
<sec id="Ch1.S3.SS1">
  <title>Simple mechanism</title>
      <p>The simple mechanism (Table S2) is an improved
version of the mechanism used by Sinha et al. (2008) since it includes
additional inorganic chemistry reactions from IUPAC 2001. The addition of
these inorganic reactions aims at taking into account cross- and
self-reactions of radical species (mainly OH <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and
HO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>HO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, as well as termination (OH <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, OH <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO),
and propagation (HO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> NO) reactions of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> with radicals. The
latter is the reaction leading to the spurious formation of OH during C3
measurements.</p>
      <p>Apart from these inorganic reactions, reactions of OH with pyrrole
(1.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; Atkinson et al., 1984;
Dillon et al., 2012) and with a surrogate hydrocarbon (5.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, typical of C5–C6 alkanes or aromatics)
are included in the mechanism, both leading to a similar surrogate of
organic peroxy radicals. In addition, reactions describing the chemistry of
this surrogate RO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> are included: RO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> RO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>,
RO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, RO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> NO <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> RO <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and
RO <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>; reaction rate constants for these reactions are those for
methyl peroxy radical (CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (3.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>13</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 5.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 7.7 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and 1.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>15</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively). This mechanism leads to a total number of 42 reactions.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Master Chemical Mechanism (MCM)</title>
      <p>A more comprehensive analysis of the chemistry occurring inside the CRM
reactor has been conducted using the MCM v3.2. The use of a detailed
mechanism such as MCM aims at better representing the chemistry of peroxy
radicals. Indeed, a detailed speciation of peroxy radicals that are formed
during the oxidation of primary organic compounds is included in this
mechanism. For this study, a MCM subset was extracted for inorganic
reactions, ethane, propane, ethene, propene and isoprene. The 2(5H)-Furanone
chemistry was also extracted to use it as a surrogate for the pyrrole
chemistry since the latter is not included in MCM. This subset of the MCM
led to a mechanism containing 502 species and 1610 reactions.</p>
      <p>The surrogate used for pyrrole, 2(5H)-Furanone (C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, is
named BZFUONE in MCM. This surrogate was chosen to get a molecule whose
molecular structure is as close as possible to the pyrrole structure. It is
also a cyclic compound but with an oxygen atom inside the ring instead of a
nitrogen atom. BZFUONE also contains a carbonyl group in <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> position
of the oxygen atom, which is not the case for pyrrole. We acknowledge that
this is a crude approach to account for the pyrrole chemistry in the
mechanism. To the best of our knowledge, there is no information about the
pyrrole chemistry in the literature, and a more rigorous approach was not
possible. There is, therefore, a need for laboratory studies to investigate
the photodegradation of pyrrole in atmospheric chambers.</p>
      <p>The MCM was modified as follows. The reaction of pyrrole with OH
included in the mechanism leads to the formation of the same RO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> as
the reaction of BZFUONE with OH. However, the reaction rate constant was set
at the same value as in the simple mechanism (i.e., 1.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The same approach was used for the reaction of
pyrrole with O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, using a rate constant of 1.57 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>17</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Atkinson et al., 1984).</p>
      <p>All the simulations were conducted using operating conditions used during
laboratory investigations, i.e., <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn>20</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>P</mml:mi><mml:mo>=</mml:mo><mml:mn>760</mml:mn></mml:mrow></mml:math></inline-formula> torr, except
for the RH. Indeed, simulations were performed for
completely dry conditions (RH <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0 %) and for saturated conditions
(RH <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 100 %).</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Dunkirk field campaign</title>
      <p>Preliminary results of OH reactivity measurements performed during a
campaign are presented in Sect. 5.4 as an example to discuss how the raw
data are processed and how uncertainties are estimated.</p>
      <p>This campaign took place at a ground site located inside the harbor area of
Dunkirk (51.0523<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>N; 2.3540<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>E), France, from 26 June to
31 July 2014. This site was influenced by industrial, urban, and marine
emissions (moderate to high NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>: &lt; 1  to 150 ppb).
Sequential measurements of OH reactivity and VOCs were performed with the
MD-CRM instrument with time resolutions of 20 min for OH reactivity and 10 min for VOCs. This approach was especially designed for an identification of
potential reactive species that are responsible for missing OH reactivity.
Two different high-flow-rate sampling inlets (approximately 1 SLPM) were
used for measuring OH reactivity and VOCs. These inlets were 5 m long and
were made of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> in. Teflon tubing. The VOC sampling line was
heated at 50 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, while the sampling line for the CRM was kept at
ambient temperature.</p>
      <p>Collocated measurements of 40 VOCs, inorganic species (NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>,
SO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, CO, CO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, meteorological parameters and aerosols were also
performed. The results from this campaign will be presented in a forthcoming
publication.</p>
</sec>
<sec id="Ch1.S5">
  <title>Results and Discussions</title>
      <p>Experimental parameterizations of the different corrections applied to the
MD-CRM measurements are presented in this section, as well as the comparison
to simulations conducted with the box models described above. We then
present how the raw data from the Dunkirk field campaign were processed and a
detailed assessment of the detection limit and measurement uncertainties.</p>
<sec id="Ch1.S5.SS1">
  <title>Correction for changes in RH between C2 and C3</title>
      <p>Figure 2 shows the results of three experiments
conducted to assess the sensitivity of C2 to humidity during the Dunkirk
field campaign. The decrease of C2 with relative humidity is linear and can
therefore be easily corrected during ambient measurements. A corrected C2
value is calculated for the RH value observed during the C3 measurement,
taking into account its dependence on humidity (see Fig. 2) and the difference in the <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> ratio
monitored during C2 and C3 (see Eq. 3). In this
equation, p corresponds to the slope of the linear regression between C2 and
the <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> ratio. The uncertainty in the slope was estimated to be 12 %
(1<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from laboratory and field experiments. The corrected C2 value
is then used in Eq. (1) to calculate the OH
reactivity.

                <disp-formula id="Ch1.E3" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:msub><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">corrected</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="normal">p</mml:mi><mml:mfenced close="]" open="["><mml:msub><mml:mfenced open="(" close=")"><mml:mfrac><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn></mml:mrow><mml:mrow><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:mfrac></mml:mfenced><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mfenced close=")" open="("><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mn>37</mml:mn></mml:mrow><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:mfrac></mml:mfenced><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mfenced></mml:mrow></mml:math></disp-formula>

          The three experiments displayed in Fig. 2
highlight the reproducibility of this determination over a period of ambient
measurements longer than a month. The black and red segments are the mean
and maximum variations of <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> observed between C2 and C3 during the
field campaign, respectively. These segments indicate the amplitude of the
correction that had to be applied to measured C2 values (0.1 and 3.9 ppbv
for the mean and the maximum variations, respectively). The average
correction was 5.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.2 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (1<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for the whole field
campaign.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Experimental parameterization of the NO artifact. Top panel left
axis: changes in C3 (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> C3 expected<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>C3 measured) as a
function of NO in the CRM reactor. Three experiments conducted at
pyrrole-to-OH ratios of 1.6 (blue diamonds), 2.2 (green triangles), and 3.9
(red squares) are shown. The right axis corresponds to absolute changes in
total OH reactivity for the experiment conducted at a pyrrole-to-OH ratio of
2.2. Solid lines are quadratic regressions, whose equations are shown. Error
bars are uncertainties in <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 (approximately 9 %) calculated by a
quadratic propagation of errors. Middle and bottom panels: trends of the
first- (bottom) and second-order (middle) monomials with the
pyrrole-to-OH ratio for the quadratic regressions displayed in the top
panel. The experiment performed using dry zero air (pyrrole-to-OH ratio of
3.9) is not included in the linear regressions (see text).</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S5.SS2">
  <?xmltex \opttitle{Corrections for NO and NO${}_{{2}}$ artifacts}?><title>Corrections for NO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> artifacts</title>
<sec id="Ch1.S5.SS2.SSS1">
  <title>NO artifact – dependence on the pyrrole-to-OH ratio</title>
      <p>Figure 3 shows experiments conducted to quantify
the C3 dependence on NO due to the spurious formation of OH from
HO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> NO. These experiments were made at different pyrrole-to-OH ratios
by sampling humid zero air. A total of four laboratory experiments (three shown in Fig. 3) were conducted at pyrrole-to-OH ratios
ranging from 1.6 to 3.9, covering the typical range of ratios observed during
ambient measurements (generally from 1.6 to 2.2).</p>
      <p>The variation of C3 (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3) is computed as the difference between an
expected C3 and the measured C3, since a decrease in the pyrrole mixing
ratio is observed when NO increases. The expected C3 is calculated using
measured levels of C1 and C2, and an expected OH reactivity due to NO (from
1.1 to 30.9 s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Knowing these three terms, one can calculate the
expected C3 from Eq. (1). To indicate the
level of correction brought to the OH reactivity measurements, the absolute
change in total OH reactivity for the experiment conducted at a
pyrrole-to-OH ratio of 2.2 is also given in Fig. 3 (right axis).</p>
      <p>As expected, a decrease of the pyrrole mixing ratio is observed when NO is
introduced inside the reactor at a constant pyrrole-to-OH ratio. However,
the variation of C3 with NO is not linear and varies with the pyrrole-to-OH
ratio. Indeed, the difference between the expected and measured C3 indicates
a plateau at high NO mixing ratios. In addition, the amplitude of this NO
artifact increases with the pyrrole-to-OH ratio, i.e., with decreasing OH
concentrations in the reactor, C1 being kept constant for all experiments.</p>
      <p>A quadratic regression forced through the origin was applied to fit the
observations (solid lines in Fig. 3). It is
interesting to note that the parameters for the quadratic regression vary
linearly with the pyrrole-to-OH ratios (see middle and bottom panels in Fig. 3). It is thus possible to interpolate the
parameters from the quadratic regression to the pyrrole-to-OH ratios
observed during field measurements to calculate the correction to apply to
C3 (Eqs. 4–7):

                  <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E4"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mi mathvariant="normal">corrected</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:msubsup><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mi mathvariant="normal">measured</mml:mi></mml:msubsup><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E5"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mtext>with</mml:mtext><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mi>a</mml:mi><mml:msup><mml:mfenced open="[" close="]"><mml:mi mathvariant="normal">NO</mml:mi></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mi>b</mml:mi><mml:mfenced close="]" open="["><mml:mi mathvariant="normal">NO</mml:mi></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E6"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mtext>with</mml:mtext><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mfrac><mml:mi mathvariant="normal">pyrrole</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="normal">and</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi>b</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mfrac><mml:mi mathvariant="normal">pyrrole</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mtext>so</mml:mtext><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mfrac><mml:mi mathvariant="normal">pyrrole</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mfenced><mml:msup><mml:mfenced close="]" open="["><mml:mi mathvariant="normal">NO</mml:mi></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E7"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><?xmltex \hack{\hspace{1.35cm}}?><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi>b</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mfrac><mml:mi mathvariant="normal">pyrrole</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:mfrac><mml:mo>+</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mfenced><mml:mfenced open="[" close="]"><mml:mi mathvariant="normal">NO</mml:mi></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              The experiment performed using dry zero air (pyrrole-to-OH ratio of 3.9) is
not taken into account in the linear regressions displayed in the bottom
panels of Fig. 3 because a deviation from the
linearity is observed. Not considering this point is acceptable since
completely dry conditions are never observed during ambient measurements,
for which pyrrole-to-OH ratios are always lower than 2.6. These experiments
were also carried out by adding different gas standards (ethane and
isoprene) inside the reactor at the same time as NO. The gas standard
additions were adjusted to get OH reactivity values from VOCs ranging from
22.2 to 36.6 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. These experiments and the discussion on the effect of
adding a VOC are given in the Supplement (Fig. S2 in the Supplement). Briefly, no
clear impact was found on the NO artifact, suggesting that the correction
characterized above is suitable for ambient measurements. This correction
can be applied during field measurements using pyrrole-to-OH ratios that are
continuously monitored by the CRM instrument and measured ambient mixing
ratios of NO.</p>
</sec>
<sec id="Ch1.S5.SS2.SSS2">
  <?xmltex \opttitle{NO${}_{{2}}$ artifact}?><title>NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> artifact</title>
      <p>Figure 4 (top panel) displays the changes in C3
with NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> mixing ratios inside the reactor for three different
pyrrole-to-OH ratios. As for NO, the introduction of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the reactor
leads to a decrease of the pyrrole mixing ratio. <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 also appears to
be nonlinear, with NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, exhibiting a plateau at mixing ratios higher
than approximately 150 ppb. However, no clear difference is observed for
experiments conducted at various pyrrole-to-OH ratios.</p>
      <p>The artifact caused by NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> may be due to its conversion into NO before
or within the reactor. To determine the fraction of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> converted into
NO, we calculated the amount of NO needed (based on the experiments
presented in Sect. 5.2.1) to explain the changes observed in C3 when
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was introduced inside the reactor. Based on the entire set of
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> experiments, these calculations led to a conversion ranging from
16  to 37 %, with an average value of 24 % (<inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>9 %, 1<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (Fig. 4 bottom panel).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Experimental parameterization of the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> artifact. Top
panel: changes in C3 (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> C3 expected<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>C3 measured) as a
function of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> in the CRM reactor. Three experiments conducted at
pyrrole-to-OH ratios of 1.6 (blue diamonds), 2.0 (green triangles), and 3.2
(red squares) are shown. Error bars are uncertainties in <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3
(approximately 9 %) calculated by a quadratic propagation of errors. The
black line and the equation correspond to a quadratic regression for the
three experiments. Bottom panel: quantification of the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> fraction
converted into NO (see text). The red line is the mean value of
approximately 24 % derived for the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> conversion.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f04.png"/>

          </fig>

      <p>Further work was performed to study the conversion of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> inside the
MD-CRM instrument. A NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> analyzer (Thermo Environmental Instruments,
model 42C) was connected to the reactor exhaust instead of the PTR-MS, while
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> was introduced at the reactor inlet. Since the sampling flow rate
of the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> analyzer was 600 sccm, 460 sccm of zero air was added in the
sampling line of the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> analyzer to only sample 140 sccm from the
reactor, similar to the sampling flow rate from the PTR-MS instrument. Large
mixing ratios of NO were observed at the exit of the reactor (between 25 and
30 % of total NO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> when the mercury lamp was off, while low NO mixing
ratios (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 8.7 % of total NO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were observed at the
reactor inlet. This result indicates that NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> is not converted into NO
by photolysis but rather by heterogeneous chemical processes, probably on
stainless-steel pieces upstream and downstream of the glass reactor. The
replacement of all the stainless-steel pieces in the setup is planned in
the future to avoid, or at least to reduce, this NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> conversion.</p>
      <p>Using a similar approach to that for NO, the correction to be applied in C3 for
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> can be calculated using a quadratic regression, shown in Fig. 4,
independently of the pyrrole-to-OH ratio and using the measurements of
ambient NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. It is worth noting that the amplitude of the
correction is significantly lower for NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> compared to NO.</p>
</sec>
<sec id="Ch1.S5.SS2.SSS3">
  <title>Comparison of model simulations to laboratory observations</title>
      <p>Box model simulations were compared to experimental observations discussed
above. It is worth noting that pyrrole-to-OH ratios reported for the
simulations were calculated using the same approach as during laboratory
experiments, i.e., using Eq. (2). As already
mentioned, the calculations do not lead to the real pyrrole-to-OH ratios
(calculated from concentrations of pyrrole and OH used to initialize the
model) but to apparent ratios since C1–C2 is not the total OH mixing ratio
inside the reactor but the amount of OH reacting with pyrrole. Since the
mechanisms include self- and cross-reactions of radicals, all the OH
introduced in the model does not react with pyrrole, and true pyrrole-to-OH
ratios are lower than the measured apparent ratios. A comparison of real and
apparent ratios is given in the Supplement (Fig. S3). For
instance, an apparent ratio of 2 corresponds to a real ratio of
approximately 1 for simulations conducted under dry conditions with the
simple mechanism and initial mixing ratios of OH and HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> set at the
same value in the model.</p>
      <p>Initial OH mixing ratios were set in the simulations to reproduce apparent
pyrrole-to-OH ratios observed during laboratory experiments. Real mixing
ratios of OH inside the reactor were also determined experimentally by
introducing a large amount of isoprene (3 ppmv) in the presence or absence
of OH. OH mixing ratios were calculated from the consumption of isoprene and
compared to levels set in the model to reproduce laboratory observations
(see Supplement, Fig. S4). It was found that OH mixing ratios
set in the model agree within uncertainties with experimental
determinations, indicating that initial conditions used in the model are
representative of the real OH levels inside the reactor.</p>
      <p>Experimental results related to the NO artifact, as well as simulations
performed using the two mechanisms described in Sect. 3 (simple mechanism
and MCM), are displayed in Fig. 5.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5"><caption><p>Comparison of model simulations to laboratory observations for the
NO artifact. Top panel: experimental (filled symbols and solid lines) and
simulated (open symbols) results. The dashed and dotted lines are for the
simple mechanism and MCM, respectively. Changes in C3 (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> C3
expected<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>C3 measured) are shown as a function of NO in the CRM reactor.
Experimental values are the same as in Fig. 3.
Simulations were made at the same pyrrole-to-OH ratios as the experiments
(same color code) and under dry conditions. Middle and bottom panel:
experimental (black dots) and simulated (open circles) results. Red and blue
circles are for the simple mechanism and MCM, respectively. These curves
show the trends of the first- (bottom) and second-order (middle)
monomials with the pyrrole-to-OH ratio for the quadratic regressions
presented in the top panel. The red lines and the equations correspond to
linear regressions adjusted in the experimental results. The experiment
performed using dry zero air (pyrrole-to-OH ratio of 3.9) is not included in
the linear regressions (see text).</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f05.png"/>

          </fig>

      <p>Both models predict a change in C3 that is similar to laboratory
observations when NO increases inside the reactor. Indeed, the models
predict that <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 first increases with NO and levels off after the
addition of a certain amount (&gt; 90 ppbv). This behavior indicates
that all HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radicals are titrated when a threshold of NO is reached
and that further addition of NO does not cause any additional formation of OH
through the NO <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> reaction. Furthermore, both models also predict
that <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 becomes larger at higher pyrrole-to-OH ratios, similar to
experimental observations. A potential reason for this behavior is that the
concentrations of both OH and HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> are lower at higher pyrrole-to-OH
ratios, since the pyrrole concentration is held constant in all experiments
and simulations (C1 <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 55 ppb). Lower concentrations of radicals lead to a
slower reaction rate between OH and HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. As a consequence, OH radicals
formed from NO <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, even in smaller quantities, will preferentially
react with pyrrole rather than HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, leading to a larger change in
<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3.</p>
      <p>Significant differences are found between the simulations conducted using
the two mechanisms. Indeed, simulations performed using the simple mechanism
lead to an overestimation of the NO interference by up to 27 %, while
simulations performed using MCM lead to an underestimation of 10 % at
most. These differences lie in the way the chemistry of organic peroxy
radicals is treated. In the simple mechanism, each reaction of OH with an
organic compound gives the same RO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radical, which propagates to
HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> after reaction with NO and O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> without any other byproduct. In
MCM, a more complex chemistry is included since specific peroxy radicals are
formed for each reacting organic molecule and since closed-shell byproducts are
generated from the peroxy radical reactions, which can further react with
OH. Since, the simulations from the two mechanisms encompass the
experimental results, one can conclude that the lack of speciation for
RO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radicals and of secondary chemistry in the simple mechanism does not
allow for correct reproduction of the laboratory observations, while the
secondary chemistry included in the MCM, in particular the proxy used to
account for the pyrrole chemistry (BZFUONE), is not fully representative of
the chemistry occurring inside the CRM reactor.</p>
      <p>It is interesting to note that both mechanisms lead to coefficients (a and
b) of the quadratic regressions (<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 vs. pyrrole-to-OH) similar to
those observed for the laboratory experiments (see bottom panels of
Fig. 5).</p>
      <p>Since all the simulations described above were conducted under dry
conditions, the influence of humidity was tested by repeating the same
simulations at a relative humidity of 100 % (see Fig. S5). A decrease of <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 of less than 10 % was observed at all
pyrrole-to-OH ratios. This trend can be due to a water enhancement of the
HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> self-reaction rate, reducing the secondary formation of OH, and
hence the NO artifact. In practice, the pyrrole-to-OH ratios are directly
linked to relative humidity inside the reactor since OH levels depend on
the amount of water available for photolysis. Simulation results that have
to be compared to experimental results are between these two extreme cases
(dry and RH saturated), being closer to dry-condition results at higher
pyrrole-to-OH ratios and vice versa. However, only small differences are
observed between dry and RH-saturated conditions, and the simulations made
under dry conditions are suitable for this comparison.</p>
      <p>The effect of adding gas standards (isoprene and ethane) in the simulations
has also been investigated and is displayed in Fig. S6. Simulations made
using MCM suggest a small dependence of <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>C3 (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 6.1 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.1 %) on OH reactivity for values in the range 20–40 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
especially at high NO concentrations (NO &gt; 100 ppb). This
difference is small and is within measurement uncertainties.</p>
      <p>Simulations presented above were performed assuming no O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> in the
reactor. However, photolysis of O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> may occur inside the reactor due to
the UV lamp and may lead to a significant O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> concentration. The
influence of O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> on simulated NO artifacts was tested using an initial
O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> mixing ratio of 200 ppb with the MCM (see Fig. S12.2). The 200 ppb of ozone corresponds to the value measured at the
exhaust of the reactor under dry conditions, using an ozone analyzer
(Environment S.A., model O3-42M). Adding ozone in the simulations only leads
to a small decrease of approximately 3 % for the NO artifact, independent
of the pyrrole-to-OH ratio. It is interesting to note that the presence of
hundreds of parts per billion (ppb) of ozone in the reactor might also lead to additional
production of OH through ozone photolysis, producing O(<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula>D), which then
quickly reacts with H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O to form two OH radicals. Therefore, OH radicals
present in the reactor may come not only from H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O photolysis but also
from O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> photolysis.</p>
</sec>
</sec>
<sec id="Ch1.S5.SS3">
  <title>Correction for not operating the CRM under pseudo-first-order
conditions</title>
      <p>Corrected values of C2 (Eq. 3) and C3 (Eq. 4) are used in Eq. (1) to calculate the measured OH reactivity. As
mentioned previously, Eq. (1) rests on the
assumption that chemical reactions occur under first-order kinetic
conditions with respect to pyrrole and ambient trace gases. However, as
discussed above, this assumption is not fulfilled since the OH mixing ratio
inside the reactor is of the same magnitude as the pyrrole mixing ratio.
The correction applied to the calculated OH reactivity values to account for
this artifact is described below.</p>
<sec id="Ch1.S5.SS3.SSS1">
  <title>Experimental characterization – dependence on the pyrrole-to-OH
ratio</title>
      <p>Figure 6 displays experimental observations of the
measurement bias caused by not operating the instrument under
pseudo-first-order conditions. This figure compares OH reactivity values
calculated from the addition of a gas standard to values measured by the
MD-CRM instrument. The measurements were derived using Eq. ( 1) and corrected for changes in humidity between
C2 and C3 (see Sect. 5.1). NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> species were not added in these
experiments.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Experimental parameterization of the artifact caused by not
operating the instrument under pseudo-first-order conditions. Comparison of
OH reactivity values calculated from the addition of gas standards to
measured values. Top panel: addition of three different gas standards
(isoprene: red squares; ethane: blue diamonds; and propene: green triangles)
at a pyrrole-to-OH ratio of 1.4. Middle panel: addition of the three gas
standards at a pyrrole-to-OH ratio of 2.3. Bottom panel: addition of
isoprene at three different pyrrole-to-OH ratios (1.4: red squares; 1.8:
blue squares; and 2.3: green squares).</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f06.png"/>

          </fig>

      <p>The top panel of Fig. 6 shows results from the
addition of three different gas standards (isoprene, ethane, and propene),
characterized by OH rate constants spanning almost three orders of magnitude
(1.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 2.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>13</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and 2.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively), at a pyrrole-to-OH ratio of 1.4.
This figure indicates a linear relationship between the measured and the
calculated OH reactivity values. The slope <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> of a linear regression
represents the correction factor that has to be applied to the measured OH
reactivity values (see Eq. 8):
              <disp-formula id="Ch1.E8" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">true</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mi>F</mml:mi><mml:mo>∗</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">measured</mml:mi></mml:msubsup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">true</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is the calculated total OH reactivity, based on the
concentrations and OH reaction rate constants of the gas standards, and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">measured</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is the OH reactivity measured by the MD-CRM instrument,
corrected for changes in relative humidity between C2 and C3. For ambient
measurements, <inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">true</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> will be the measured OH reactivity corrected
for not operating the instrument under pseudo-first-order conditions.</p>
      <p>The correction factors determined at a pyrrole-to-OH ratio of 1.4 indicate
that the reactivity of the gas standard plays a role in the observed bias.
Higher correction factors are found for more reactive compounds. Indeed, at
a pyrrole-to-OH ratio of 1.4, the correction factor determined for isoprene
is 7.6 % higher than for propene and is 50.6 % higher than for ethane.
However, the middle panel of Fig. 6 indicates that the differences observed
between the different gas standards are lower at a pyrrole-to-OH ratio of
2.3, with the correction factor derived for isoprene being only 1 %
different than for ethane.</p>
      <p>Experiments performed at various pyrrole-to-OH ratios (four ratios: 1.4, 1.6,
1.8, 2.3; not shown) indicate that the relative difference between the
correction factors determined using ethane and isoprene range from 1 to 58 %
and confirm the strong dependence on the pyrrole-to-OH ratio, with
negligible differences for ratios higher than 2.3. These two gas standards
represent extreme cases since ethane is one of the least reactive VOCs in the
atmosphere (reaction rate constant with OH: 2.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>13</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, while isoprene is one of the most reactive
(reaction rate constant with OH:
1.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. It is interesting to note that ambient air is a mixture of a
large number of compounds with reaction rate constants ranging between those
of ethane and isoprene. The correction factor should therefore be calculated
as an averaged correction factor determined using a VOC exhibiting a slow
rate constant with OH such as ethane and a VOC exhibiting a fast rate
constant such as isoprene. The uncertainty in the averaged correction factor
can then be estimated from the difference observed in <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> for these two VOCs.</p>
      <p>Results from the addition of the same gas standard (isoprene) at three
different pyrrole-to-OH ratios (1.4, 1.8, and 2.3) are shown in the bottom
panel of Fig. 6. Correction factors derived from
these experiments increase when the pyrrole-to-OH ratio decreases. Indeed,
the highest correction factor (1.59) is found for the lowest pyrrole-to-OH
ratio (i.e., 1.4), and the lowest correction factor (0.84) is found for the
highest pyrrole-to-OH ratio (i.e., 2.3). A decrease of the correction factor
with the pyrrole-to-OH ratio is consistent with a kinetic regime getting
closer to pseudo-first-order conditions (OH<inline-formula><mml:math display="inline"><mml:mrow><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>≪</mml:mo></mml:mrow></mml:math></inline-formula> pyrrole) and
therefore to correction factors closer to 1.</p>
      <p>Results from the addition of other gas standards (ethene, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>8.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and propane,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>1.09</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are
consistent with the results shown in Fig. 6 and confirmed the trends
discussed above (Fig. S7).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Dependence of the correction factor <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> on the pyrrole-to-OH ratio.
The correction factors were derived from the slopes of scatterplots as
shown in Fig. 6 for different laboratory (blue
circles) and field (red squares) experiments. These experiments were made
over a period of 7 months. Error bars are 1<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> uncertainties of the
slopes determined for each experiment. The colored area is the range of
pyrrole-to-OH ratios observed in the field (1.6–2.2) for the MD-CRM
instrument.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f07.png"/>

          </fig>

      <p>From these experiments, it appears essential to take into account the
pyrrole-to-OH ratio in the correction to be applied to the measured OH reactivity
values. Figure 7 shows how the correction factor
varies with the pyrrole-to-OH ratio. Correction factors shown in this figure
were derived from single experiments using different standards (ethane,
ethene, propane, propene, and isoprene) as shown in Fig. 6. This figure gathers laboratory and field
experiments performed over 7 months. The gas standards were chosen to cover
a large range of reaction rate constants with OH (from 2.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>13</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for ethane
to 1.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for isoprene) to take into account the impact of
the gas reactivity on the correction factor.</p>
      <p>From the linear relationship observed in Fig. 7,
the correction factor to be applied to the measurements can be calculated using
Eq. (9) and the pyrrole-to-OH ratio that is
monitored during field or laboratory measurements.
              <disp-formula id="Ch1.E9" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn>0.16</mml:mn><mml:mi mathvariant="normal">Pyr</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">OH</mml:mi><mml:mo>+</mml:mo><mml:mn>1.27</mml:mn></mml:mrow></mml:math></disp-formula>
            Within the small range of pyrrole-to-OH ratios generally encountered during
field campaigns, typically from 1.6 to 2.2, the correction factors
determined using Eq. (9) range between 0.9 and 1.0.
Therefore, an averaged value of the correction factors can be considered
instead of using a pyrrole-to-OH dependent correction
(Fig. 7). It is interesting to note that this
correction takes into account the artifact caused by not operating the
instrument under pseudo-first-order conditions as well as any unknown artifact
that could impact the OH reactivity measurements, such as radical
segregation and wall losses of radicals inside the reactor.</p>
</sec>
<sec id="Ch1.S5.SS3.SSS2">
  <title>Comparison of model simulations to laboratory observations</title>
      <p>Simulations performed using both mechanisms described in Sect. 3 (the
simple mechanism and MCM), as well as a mechanism similar to the one
described by Sinha et al. (2008), which does not account for radical–radical
reactions, are displayed in Fig. 8. The latter is
referred to as the two-reaction mechanism in the following.</p>
      <p>The top panel of Fig. 8 displays the results from
the addition of three different gas standards (isoprene, ethane, and
propene) using the MCM mechanism and a surrogate standard for the simple
mechanism, characterized by different reaction rate constants with OH (1.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
2.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>13</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 2.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
and 5.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively). These simulations were performed
at a pyrrole-to-OH ratio of 1.4. It is interesting to note that simulations
performed using MCM for a gas standard exhibiting an OH rate constant of 5.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> are similar to that observed
with the simple mechanism, suggesting that the detailed secondary chemistry
included in MCM is not important in the modeling of this correction. These results
show that the correction factor should increase with the OH rate constant,
independently of the mechanism used (the MCM or the simple mechanism). This
trend is consistent with laboratory observations discussed above.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p>Simulations of the artifact due to not operating the instrument
under pseudo-first-order conditions. Comparison of OH reactivity values
calculated from the addition of gas standards to simulated values
(simulation of the C1–C2–C3 modulations; see text). Top panel: addition of
four different gas standards (isoprene: red squares; ethane: blue diamonds;
propene: green triangles; and a surrogate standard for the simple mechanism:
purple circles) at a pyrrole-to-OH ratio of 1.4. Simulations were conducted
using the MCM and the simple mechanism as indicated in the legend. Bottom
panel: addition of a unique standard at three different pyrrole-to-OH ratios
(1.4: red symbols; 1.9: blue symbols; and 2.9: green symbols) for
simulations conducted with the simple mechanism (squares) and the two-reaction
mechanism (triangles). The gas standard added in the model for these two
mechanisms has a reaction rate constant toward OH of 5.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f08.png"/>

          </fig>

      <p>Simulations conducted with the simple mechanism and the two-reaction mechanism
are displayed in the bottom panel of Fig. 8 for a
surrogate gas standard (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn>5.0</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molecules<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at three different pyrrole-to-OH ratios (1.4, 1.9, and 2.9). The
correction factor derived with the simple mechanism decreases with
increasing pyrrole-to-OH ratios as observed during the laboratory
experiments. As mentioned previously, these observations are consistent with
a chemical system getting closer to pseudo-first-order conditions
(OH <inline-formula><mml:math display="inline"><mml:mo>≪</mml:mo></mml:math></inline-formula> pyrrole) when the pyrrole-to-OH ratio increases. In
contrast, an opposite trend is observed when the two-reaction mechanism is
used. This result highlights the importance of accounting for
radical–radical reactions in the mechanism to describe the complex chemistry
occurring in the reactor. Both mechanisms, the simple mechanism and MCM,
lead to correction factors that converge to unity when the pyrrole-to-OH
ratio increases (i.e., OH decreases).</p>
      <p>Figure 9 (top panel) shows how the correction
factor changes with the pyrrole-to-OH ratio. Simulated values stem from
simulations conducted using the box model including the MCM mechanism and
constrained with ethane or isoprene under dry conditions, as well as under
wet conditions (RH <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 100 %) for ethane. The simulated correction factors
for ethane under dry conditions are higher than the measurements by 72
and 54 % at pyrrole-to-OH ratios of 1.4 and 1.9, respectively. These
differences are even larger for isoprene (143  and 80 % at
pyrrole-to-OH ratios of 1.4 and 1.9, respectively). However, a similar trend
is observed: a decrease of the correction factors with increasing
pyrrole-to-OH ratios. Performing simulations at 100 % of relative humidity
improves the agreement but still fails short of reconciling simulations and
measurements. Furthermore, a RH of 100 % is not likely inside the reactor,
and the real conditions are between these two extreme cases.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p>Comparison of model simulations to laboratory observations for the
artifact caused by not operating the instrument under pseudo-first-order
conditions. Top panel: trends of the simulated and measured correction
factors with the pyrrole-to-OH ratio. The measured correction factors (blues
circles) are the same as in Fig. 7. The
simulated correction factors stem from simulations conducted using MCM and
constrained with ethane under dry conditions (green open diamonds) and wet
conditions (green filled diamonds), or constrained with isoprene under dry
conditions (red open squares). The colored area corresponds to the range of
pyrrole-to-OH ratios observed during field measurements (1.6–2.2). Bottom
panel: trend of the relative difference between correction factors simulated
under dry conditions for ethane and isoprene as a function of the
pyrrole-to-OH ratio. Relative difference calculated as 100 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> (F<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">isoprene</mml:mi></mml:msub></mml:math></inline-formula>-F<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">ethane</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>/F<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ethane</mml:mi></mml:msub></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f09.png"/>

          </fig>

      <p>Several hypotheses (segregation between the reactants, RO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> OH
reactions (Fittschen et al., 2014), uncertainties in reaction rate constants
of radical–radical reactions, higher or lower proportions of HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
compared to OH, formation of O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> inside the reactor) were tested in the
simulations to try to reconcile simulated results and laboratory
observations (see Supplement  S8 to S13). Unfortunately, none of
these hypotheses seems to fully explain the disagreement, even if accounting
for (i) uncertainties in reaction rate constants of radical–radical
reactions and (ii) a potential lower proportion of HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> compared to OH
allow improving the agreement. The combination of these two hypotheses
(lower proportion of HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> by 25 % and reaction rate constants of OH <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> reduced by 20 %) leads to an agreement within 15 % (not
shown).</p>
      <p>The model inability to reproduce laboratory observations may be due to (i)
the approach used to perform the simulations (see section 3), (ii) a
misrepresentation of the secondary chemistry for pyrrole, and (iii) an
impact of the flow dynamic inside the reactor. Improving model simulations
would require investigating the pyrrole chemistry, coupling the chemical
mechanisms to a CFD (computational fluid dynamics) model, and considering
that a constant production of OH from the injector would lead to the
reaction of OH with byproducts and peroxy radicals previously formed inside
the reactor.</p>
      <p>Nevertheless, similar behaviors observed between simulations and experiments
give us confidence in experimentally derived correction factors. It is worth
noting that the dependence of <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> on the reactivity of added gas standards is
reduced at higher pyrrole-to-OH ratios (see Fig. 9, bottom panel). A similar trend is observed for the water dependence. It
would therefore be beneficial to run the CRM instruments at high
pyrrole-to-OH ratios to reduce the uncertainty introduced by the correction
applied to account for not operating the instrument under pseudo-first-order
conditions, keeping in mind that a higher pyrrole-to-OH ratio leads to a
lower OH mixing ratio in the reactor, which in turn worsens the detection
limit. Working at pyrrole-to-OH ratios ranging from 1.7 to 2.0 seems to be
optimal for the MD-CRM instrument.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S5.SS4">
  <title>Detection limit and measurement uncertainties</title>
      <p>The detection limit (LOD) indicates the minimal detectable difference
between C2 and C3. The LOD was determined keeping the CRM instrument under
C2 conditions for 15 h during the Dunkirk field campaign (see section
4). This 15 h segment was then split into 5 min subsets to calculate a
standard deviation (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for each subset and an averaged value
of the standard deviation for the whole time period (<inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>). This approach was used to avoid the variability in C2
measurements due to changes in ambient relative humidity, which drives the
zero air humidity. An OH reactivity value was then calculated using the
measured C1 value, an averaged C2 value (<inline-formula><mml:math display="inline"><mml:mrow><mml:mover accent="true"><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and 3 times the
average standard deviation calculated above (i.e., <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>+</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The calculated OH reactivity value,
characteristic of the LOD at 3<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula>, was 3.0 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for an averaged
pyrrole-to-OH ratio of 1.7.</p>
      <p>To assess the total uncertainty of the OH reactivity measurements, we need
to consider a propagation of uncertainties from all the parameters included
in the OH reactivity calculation (Eq. 1),
including all the corrections described in this publication. A detailed
description of this approach is given in the Supplement (Sect. S14).</p>
      <p>An example of precision values (random error) and total uncertainty values,
taking into account different levels of corrections, is given as a function
of total OH reactivity measurements in Fig. 10
(top panel) for the Dunkirk field campaign.</p>
      <p>The precision (purple dots in the top panel) is dependent on the OH
reactivity level and ranges from approximately 50 % at the LOD of
3 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to less than 4 % at OH reactivity values higher than
50 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. When systematic errors, except those associated with the humidity
and NO corrections, are accounted for in the total uncertainty calculation
(blue dots), the total uncertainty levels off at approximately 17.5 % for
OH reactivity values higher than 15 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, while a low impact is observed
at lower OH reactivity values. This is consistent with the systematic errors
and the measurement precision driving the uncertainty at high and low OH
reactivity levels, respectively.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><caption><p>Total OH reactivity measurement uncertainties calculated for the
Dunkirk field campaign. Top panel: precision and relative uncertainty as a
function of total OH reactivity. Different levels of uncertainty are
considered: (1) the precision observed when measuring the pyrrole signal
(purple dots); (2) previous <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> systematic errors (see text), except for the
humidity and NO corrections (blue dots); (3) previous <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> the humidity
correction (green open dots); and (4) previous <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> the NO correction (red open
dots). Bottom panel: total uncertainty calculated in (4) as a function of
total OH reactivity. These data have been color-coded as a function of
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> levels.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f10.png"/>

        </fig>

      <p>Including uncertainties due to the correction for humidity changes between
C2 and C3 (green open dots) has a small impact on the total uncertainty, and
only small differences are observed (1.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.0 % of relative
differences on average). Finally, including uncertainties due to the
correction for NO interferences (red open dots) leads to a sharp increase of
the total uncertainty for data points characterized by elevated NO mixing
ratios (7.3 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 39.8 % of relative differences on average).</p>
      <p>Figure 10 (bottom panel) shows the total
uncertainty, including all sources of errors (precision, systematic errors,
corrections), as a function of total OH reactivity and color-coded by
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> levels. The largest uncertainties are found for high NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
levels (from 20 to 120 ppb). The total uncertainty for OH reactivity values
higher than 15 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> depends strongly on NO and ranges 18–25 % at
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> mixing ratios &lt; 30 ppb; 25–70 % at NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> mixing
ratios of 30–80 ppb; and can be as high as 200 % at NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> levels above
80 ppb, depending on the total OH reactivity level.</p>
      <p>Time series of ambient OH reactivity measurements at different stages of the
data processing are presented in Fig. 11 for the
Dunkirk field campaign, showing the amplitudes of the different corrections.</p>
      <p>In urban environments such as the Dunkirk site, the correction for NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
has the largest impact on OH reactivity measurements and is 9.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 15.7 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> on average. The correction that has the second-largest impact is
due to not operating the instrument under pseudo-first-order conditions and
is 8.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 5.8 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> on average. The humidity correction is also
significant and is 5.2 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3.2 s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> on average due to fast changes in
ambient RH (proximity of the sea). The correction for dilution is constant
and leads to an increase of the measurements by a factor of 1.23. It is
interesting to note that the accuracy of this approach to correct the OH
reactivity measurements on the MD-CRM instrument has been tested in Hansen
et al. (2015) and has been found to be suitable for NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> mixing ratios
up to 70–100 ppbv.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><caption><p>Time series of ambient OH reactivity measurements for the Dunkirk
field campaign, including (1) uncorrected measurements (black symbols), (2)
measurements corrected for dilution (blue symbols), (3) previous <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> measurements corrected for differences in relative humidity between C2 and
C3 (green symbols), (4) previous <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> measurements corrected for the NO and
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> artifacts (orange symbols), and (5) previous <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> measurements corrected
for not operating the instrument under pseudo-first-order conditions (red
symbols). These data are preliminary.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://amt.copernicus.org/articles/8/3537/2015/amt-8-3537-2015-f11.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <title>Conclusions</title>
      <p>This study presents the results of an exhaustive characterization of a CRM
instrument developed at Mines Douai. This characterization aimed to
assess the different corrections that need to be applied on the OH
reactivity measurements and to evaluate our understanding of the chemical
processes occurring inside the CRM reactor. A suite of laboratory
experiments was conducted, and the results were compared to simulations from
a box model including a simple chemical mechanism made of 42 reactions and a
more exhaustive chemical mechanism based on a subset of the Master Chemical
Mechanism. The latter was made of 1610 reactions.</p>
      <p>As previously reported in the literature, artifacts in total OH reactivity
measurements were identified from (i) changes in humidity between C2 and C3
measurements, (ii) the spurious formation of OH through the HO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula> NO
reaction, and (iii) not operating the instrument under pseudo-first-order
conditions. The correction to apply for (i) can easily be assessed by
monitoring the dependence of C2 with a proxy for humidity, e.g., <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mn>37</mml:mn><mml:mo>/</mml:mo><mml:mi>m</mml:mi><mml:mn>19</mml:mn></mml:mrow></mml:math></inline-formula> in
PTR-MS instruments.</p>
      <p>A quadratic parameterization was developed to correct the OH reactivity
measurements for (ii) by characterizing the sensitivity of C3 to NO and to
the pyrrole-to-OH ratio. Changes in C3 levels were found to increase and to
level off with NO concentrations and to increase with the pyrrole-to-OH
ratio. C3 was also found to be sensitive to NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. This dependence was
attributed to a conversion of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> into NO of approximately 24 %,
occurring mainly on surfaces and not due to photolysis in the reactor. This
unwanted conversion will be carefully investigated in future studies to
eliminate it or to reduce it to a negligible level.</p>
      <p>The correction to apply for (iii) was assessed by adding trace gases inside
the reactor and by comparing the measured OH reactivity to expected values.
These gases were chosen to exhibit different reaction rate constants with OH,
and experiments were performed at different pyrrole-to-OH ratios.
Dependences of the correction factor on the bimolecular rate constant and on
the pyrrole-to-OH ratio were observed experimentally. We recommend using an
average correction factor derived from experiments made using at least two
different standards, the first one exhibiting a slow rate constant with OH,
such as ethane, and the second one exhibiting a fast rate constant, such as
isoprene. It is also recommended to develop a parameterization depending on
the pyrrole-to-OH ratio if a large range of ratios is observed during
ambient measurements.</p>
      <p>Model simulations reproduced the magnitude of the main corrections as well
as their dependences on the pyrrole-to-OH ratio and the rate constant of the
gas standard. The reasonable agreement observed between simulations and
experiments give us confidence in the parameterizations proposed in this study.
However, it would be hazardous to use the numerical values of these
parameterizations for other CRM instruments, and it is recommended that each
group characterizes its own instrument. It is interesting to note that a
comparison of the corrections needed in different CRM instruments would help
in investigating the robustness of this technique.</p>
      <p>However, some differences were observed between simulations and experimental
results, pointing out the need for a better understanding of the pyrrole
chemistry. Additional work is needed to investigate its oxidation chemistry.
In addition, it would be worth coupling a CFD model to the chemical
mechanisms described in this work to investigate the impact of flow dynamics
on the CRM measurements, which in turn would provide a better description of
the complex processes occurring in the reactor.</p>
      <p>The CRM instrument developed at Mines Douai has already been successfully
deployed in the field and has given satisfactory results in different
environments. Good agreements during intercomparison exercises with other
instruments, another CRM instrument and a pump-probe instrument, have been
found, highlighting the suitability of the proposed corrections for the CRM
technique.</p>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/amt-8-3537-2015-supplement" xlink:title="pdf">doi:10.5194/amt-8-3537-2015-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><ack><title>Acknowledgements</title><p>The authors are grateful to   J. Williams (MPIC-Mainz) for providing a
CRM glass reactor,   V. Sinha (IISER-Mohali) for his assistance during the
development of the MD-CRM instrument, and   Stephane Sauvage for helpful
discussions about the assessment of measurement uncertainties. This research
was funded by the European Union Seventh Framework Programme under grant
agreement number 293897, the “DEFI-VOC” project and by the CaPPA project. The
CaPPA project (Chemical and Physical Properties of the Atmosphere) is funded
by the French National Research Agency (ANR) through the PIA (Programme
d'Investissement d'Avenir) under contract “ANR-11-LABX-0005-01” and by the
Regional Council Nord-Pas de Calais and the “European Funds for Regional
Economic Development” (FEDER). R. F. Hansen's internship in Mines Douai was
supported by a Chateaubriand Science Fellowship from the French Embassy of
the United States. The authors also want to thank all colleagues involved in
the field deployments of the MD-CRM instrument.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by:  D. Heard</p></ack><ref-list>
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