We apply the Res-UNet to derive a comprehensive 3D cloud tomography from 2D satellite data over heterogeneous landscapes. We combine observational data from passive and active remote sensing sensors by an automated matching algorithm. These data are fed into a neural network to predict cloud reflectivities on the whole satellite domain between 2.4 and 24 km height. With an average RMSE of 2.99 dBZ, we contribute to closing data gaps in the representation of clouds in observational data.