This paper describes a new treatment of the spatial misregistration of cloud properties for Sentinel-5 Precursor, when the footprints of different spectral bands are not perfectly aligned. The methodology exploits synergies between spectrometers and imagers, like TROPOMI and VIIRS. The largest improvements have been identified for heterogeneous scenes at cloud edges. This approach is generic and can also be applied to future Sentinel-4 and Sentinel-5 instruments.