Articles | Volume 8, issue 11
https://doi.org/10.5194/amt-8-4979-2015
https://doi.org/10.5194/amt-8-4979-2015
Research article
 | 
27 Nov 2015
Research article |  | 27 Nov 2015

Evaluation of hierarchical agglomerative cluster analysis methods for discrimination of primary biological aerosol

I. Crawford, S. Ruske, D. O. Topping, and M. W. Gallagher

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Cited articles

Benson, R., Meyer, R., Zaruba, M., and KcKhann, G.: NoCellular autofluorescence – is it due to flavins?, J. Histochem. Cytochem., 27, 44–48, 1979.
Billinton, N. and Knight, A. W.: Seeing the wood through the trees: a review of techniques for distinguishing green fluorescent protein from endogenous autofluorescence, Anal. Biochem., 291, 175–97, https://doi.org/10.1006/abio.2000.5006, 2001.
Calinski, T. and Harabasz, J.: A dendrite method for cluster analysis, Commun. Stat.-Theor. M., 3, 1–27, https://doi.org/10.1080/03610927408827101, 1974.
Crawford, I., Bower, K. N., Choularton, T. W., Dearden, C., Crosier, J., Westbrook, C., Capes, G., Coe, H., Connolly, P. J., Dorsey, J. R., Gallagher, M. W., Williams, P., Trembath, J., Cui, Z., and Blyth, A.: Ice formation and development in aged, wintertime cumulus over the UK: observations and modelling, Atmos. Chem. Phys., 12, 4963–4985, https://doi.org/10.5194/acp-12-4963-2012, 2012.
Crawford, I., Robinson, N. H., Flynn, M. J., Foot, V. E., Gallagher, M. W., Huffman, J. A., Stanley, W. R., and Kaye, P. H.: Characterisation of bioaerosol emissions from a Colorado pine forest: results from the BEACHON-RoMBAS experiment, Atmos. Chem. Phys., 14, 8559–8578, https://doi.org/10.5194/acp-14-8559-2014, 2014.
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HCA analysis methods were evaluated for the purpose of identifying primary biological aerosol sampled with a WIBS. The ward linkage with z-score normalisation could discriminate between five test particles with 98% accuracy. We applied these methods to a previously studied ambient data set, where both methods produced similar results with some minor differences in cluster partitioning. Finally we compared to previous approaches and found our new method offered improved quantification of PBA.